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4G3S
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (229 KB)
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Title
:
CRYSTAL STRUCTURE OF GLMU FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE AND PYROPHOSPHATE SNAPSHOT 2
Authors
:
P. A. Jagtap, S. K. Verma, B. Prakash
Date
:
15 Jul 12 (Deposition) - 07 Aug 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Acetyltransferase, Bifunctional, Pyrophosphorylase, Rossmann-Like Fold, Left-Handed-Beta-Helix, Cell Shape, Cell Wall Biogenesis/Degradation, Metal-Binding, Multifunctional Enzyme, Nucleotidyltransferase, Peptidoglycan Synthesis, Transferase, Acyltransferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. A. Jagtap, S. K. Verma, B. Prakash
Structural Snapshots Of Glmu From Mycobacterium Tuberculosi
To Be Published
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
2a: 2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPH... (GN1a)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: PYROPHOSPHATE 2- (POPa)
5a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
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No.
Name
Count
Type
Full Name
1
CO
2
Ligand/Ion
COBALT (II) ION
2
GN1
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
POP
1
Ligand/Ion
PYROPHOSPHATE 2-
5
UD1
1
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:12 , ALA A:13 , ALA A:14 , GLY A:15 , ARG A:19 , LYS A:26 , GLN A:83 , PRO A:86 , LEU A:87 , GLY A:88 , THR A:89 , ALA A:92 , ASP A:114 , TYR A:150 , GLY A:151 , GLU A:166 , ASN A:181 , TYR A:209 , THR A:211 , ASN A:239 , POP A:503 , MG A:505 , CO A:506 , HOH A:640 , HOH A:676 , HOH A:685 , HOH A:693 , HOH A:958 , HOH A:959 , HOH A:963 , HOH A:970 , HOH A:971
BINDING SITE FOR RESIDUE UD1 A 501
2
AC2
SOFTWARE
ARG A:344 , LYS A:362 , PRO A:373 , HIS A:374 , TYR A:377 , ASN A:388 , VAL A:394 , ASN A:397 , HOH A:751 , HOH A:813 , HOH A:833 , HOH A:962 , HOH A:968
BINDING SITE FOR RESIDUE GN1 A 502
3
AC3
SOFTWARE
GLY A:15 , PRO A:16 , GLY A:17 , THR A:18 , ARG A:19 , LYS A:26 , UD1 A:501 , MG A:505 , HOH A:604 , HOH A:829 , HOH A:957 , HOH A:963 , HOH A:969 , HOH A:970
BINDING SITE FOR RESIDUE POP A 503
4
AC4
SOFTWARE
ASP A:417 , CO A:507 , HOH A:606
BINDING SITE FOR RESIDUE MG A 504
5
AC5
SOFTWARE
ARG A:19 , UD1 A:501 , POP A:503 , HOH A:782 , HOH A:969 , HOH A:970 , HOH A:971
BINDING SITE FOR RESIDUE MG A 505
6
AC6
SOFTWARE
ASP A:114 , ASN A:239 , UD1 A:501 , HOH A:958 , HOH A:959
BINDING SITE FOR RESIDUE CO A 506
7
AC7
SOFTWARE
ASP A:417 , MG A:504 , HOH A:924
BINDING SITE FOR RESIDUE CO A 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4g3sa2 (A:264-474)
2a: SCOP_d4g3sa1 (A:6-263)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
automated matches
(55)
Protein domain
:
automated matches
(55)
Mycobacterium tuberculosis [TaxId: 1773]
(6)
1a
d4g3sa2
A:264-474
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
automated matches
(48)
Protein domain
:
automated matches
(48)
Mycobacterium tuberculosis [TaxId: 1773]
(6)
2a
d4g3sa1
A:6-263
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (86 KB)
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