Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH L-GALACTOPYRANOSE.
 
Authors :  J. Houser, G. Cioci, J. Komarek, M. Wimmerowa, N. Kostlanova, M. Lahman A. Varrot, A. Imberty
Date :  01 Nov 14  (Deposition) - 11 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Houser, J. Komarek, G. Cioci, A. Varrot, A. Imberty, M. Wimmerova
Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites Are Functionally Non- Equivalent.
Acta Crystallogr. , Sect. D V. 71 442 2015
PubMed-ID: 25760594  |  Reference-DOI: 10.1107/S1399004714026595

(-) Compounds

Molecule 1 - FUCOSE-SPECIFIC LECTIN FLEA
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificASPERGILLUS FUMIGATUS
    Organism Taxid5085
    SynonymAFL
 
Molecule 2 - FUCOSE-SPECIFIC LECTIN FLEA
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificASPERGILLUS FUMIGATUS
    Organism Taxid5085
    SynonymAFL
 
Molecule 3 - FUCOSE-SPECIFIC LECTIN FLEA
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificASPERGILLUS FUMIGATUS
    Organism Taxid5085
    SynonymAFL

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 49)

Asymmetric Unit (8, 49)
No.NameCountTypeFull Name
1CSD4Mod. Amino Acid3-SULFINOALANINE
2GIV12Ligand/IonBETA-L-GALACTOPYRANOSE
3GXL14Ligand/IonALPHA-L-GALACTOPYRANOSE
4NA3Ligand/IonSODIUM ION
5PEG7Ligand/IonDI(HYDROXYETHYL)ETHER
6PG45Ligand/IonTETRAETHYLENE GLYCOL
7PGE3Ligand/IonTRIETHYLENE GLYCOL
8ZN1Ligand/IonZINC ION
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
1CSD-1Mod. Amino Acid3-SULFINOALANINE
2GIV3Ligand/IonBETA-L-GALACTOPYRANOSE
3GXL4Ligand/IonALPHA-L-GALACTOPYRANOSE
4NA-1Ligand/IonSODIUM ION
5PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
6PG41Ligand/IonTETRAETHYLENE GLYCOL
7PGE-1Ligand/IonTRIETHYLENE GLYCOL
8ZN-1Ligand/IonZINC ION
Biological Unit 2 (6, 11)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2GIV3Ligand/IonBETA-L-GALACTOPYRANOSE
3GXL3Ligand/IonALPHA-L-GALACTOPYRANOSE
4NA-1Ligand/IonSODIUM ION
5PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
6PG41Ligand/IonTETRAETHYLENE GLYCOL
7PGE1Ligand/IonTRIETHYLENE GLYCOL
8ZN-1Ligand/IonZINC ION
Biological Unit 3 (6, 14)
No.NameCountTypeFull Name
1CSD2Mod. Amino Acid3-SULFINOALANINE
2GIV3Ligand/IonBETA-L-GALACTOPYRANOSE
3GXL4Ligand/IonALPHA-L-GALACTOPYRANOSE
4NA-1Ligand/IonSODIUM ION
5PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
6PG42Ligand/IonTETRAETHYLENE GLYCOL
7PGE1Ligand/IonTRIETHYLENE GLYCOL
8ZN-1Ligand/IonZINC ION
Biological Unit 4 (6, 10)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2GIV3Ligand/IonBETA-L-GALACTOPYRANOSE
3GXL3Ligand/IonALPHA-L-GALACTOPYRANOSE
4NA-1Ligand/IonSODIUM ION
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
6PG41Ligand/IonTETRAETHYLENE GLYCOL
7PGE1Ligand/IonTRIETHYLENE GLYCOL
8ZN-1Ligand/IonZINC ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:25 , GLU A:37 , LEU A:69 , TYR A:88 , TRP A:94 , HOH A:3057 , HOH A:3131 , HOH A:3132 , HOH A:3337 , HOH A:3338 , THR D:256 , HOH D:3175BINDING SITE FOR RESIDUE GXL A1316
02AC2SOFTWAREARG A:25 , GLU A:37 , LEU A:39 , LEU A:69 , TYR A:88 , TRP A:94 , HOH A:3056 , HOH A:3057 , HOH A:3132 , HOH A:3337 , THR D:256 , HOH D:3175BINDING SITE FOR RESIDUE GIV A2316
03AC3SOFTWAREASN A:51 , VAL A:52 , TRP A:94 , HOH A:3339BINDING SITE FOR RESIDUE PEG A1317
04AC4SOFTWAREARG A:73 , GLU A:85 , TYR A:95 , GLY A:98 , LEU A:99 , LEU A:123 , LEU A:125 , TRP A:141 , TRP A:146 , HOH A:3184 , HOH A:3340 , HOH A:3341BINDING SITE FOR RESIDUE GXL A1318
05AC5SOFTWAREARG A:126 , GLU A:138 , THR A:150 , ILE A:176 , TYR A:192 , TRP A:198 , HOH A:3185 , HOH A:3200 , HOH A:3228 , HOH A:3342 , GLU C:49BINDING SITE FOR RESIDUE GXL A1319
06AC6SOFTWARETYR A:168 , ARG A:177 , GLN A:189 , ASP A:193 , ILE A:227 , MET A:229 , TRP A:245BINDING SITE FOR RESIDUE PG4 A1320
07AC7SOFTWAREARG A:230 , GLN A:242 , PHE A:274 , TRP A:299BINDING SITE FOR RESIDUE PEG A1321
08AC8SOFTWAREASN A:22 , LEU A:24 , TYR A:40 , TRP A:44 , ARG A:282 , GLU A:296 , HOH A:3071 , HOH A:3312 , HOH A:3331 , HOH A:3344 , HOH A:3345BINDING SITE FOR RESIDUE GXL A1322
09AC9SOFTWARECYS B:244 , ASP B:246 , HIS B:252BINDING SITE FOR RESIDUE ZN B1317
10BC1SOFTWAREGLY B:59 , HOH B:3010 , HOH B:3011 , HOH B:3057 , HOH B:3058 , HOH B:3059 , HOH B:3198BINDING SITE FOR RESIDUE NA B1318
11BC2SOFTWAREARG B:25 , GLU B:37 , LEU B:69 , TYR B:88 , TRP B:94 , PEG B:1320 , HOH B:3033 , HOH B:3086 , HOH B:3237BINDING SITE FOR RESIDUE GXL B1319
12BC3SOFTWAREGLU B:37 , ASN B:51 , TRP B:94 , GXL B:1319 , HOH B:3048BINDING SITE FOR RESIDUE PEG B1320
13BC4SOFTWAREARG B:73 , GLU B:85 , TYR B:95 , GLY B:97 , GLY B:98 , LEU B:99 , LEU B:123 , LEU B:125 , TRP B:141 , TRP B:146 , HOH B:3109 , HOH B:3239BINDING SITE FOR RESIDUE GXL B1321
14BC5SOFTWAREASP A:170 , ASN A:224 , HOH A:3225 , HOH A:3264 , ARG B:126 , GLU B:138 , THR B:150 , ILE B:176 , TYR B:192 , TRP B:198 , HOH B:3118 , HOH B:3150BINDING SITE FOR RESIDUE GXL B1322
15BC6SOFTWARETYR B:168 , ARG B:177 , GLN B:189 , ASP B:193 , TYR B:199 , ILE B:227 , MET B:229 , TRP B:245BINDING SITE FOR RESIDUE PG4 B1323
16BC7SOFTWAREARG B:230 , GLN B:242 , ILE B:257 , PHE B:274 , LEU B:281 , TRP B:299BINDING SITE FOR RESIDUE PGE B1324
17BC8SOFTWAREHOH B:3217 , HOH B:3241BINDING SITE FOR RESIDUE PEG B1325
18BC9SOFTWAREASN B:22 , LEU B:24 , TYR B:40 , TRP B:44 , ARG B:282 , GLU B:296 , HOH B:3030 , HOH B:3210 , HOH B:3231 , HOH B:3242BINDING SITE FOR RESIDUE GIV B2326
19CC1SOFTWAREGLY C:59 , HOH C:3014 , HOH C:3015 , HOH C:3068 , HOH C:3069BINDING SITE FOR RESIDUE NA C1318
20CC2SOFTWARETHR B:92 , ARG C:25 , GLU C:37 , LEU C:69 , TYR C:88 , TRP C:94 , PEG C:1320 , HOH C:3041 , HOH C:3096 , HOH C:3246 , HOH C:3247BINDING SITE FOR RESIDUE GXL C1319
21CC3SOFTWAREGLU C:37 , ASN C:51 , VAL C:52 , TRP C:94 , GXL C:1319BINDING SITE FOR RESIDUE PEG C1320
22CC4SOFTWAREARG C:73 , GLU C:85 , TYR C:95 , GLY C:97 , GLY C:98 , LEU C:99 , LEU C:123 , LEU C:125 , TRP C:141 , TRP C:146 , HOH C:3082 , HOH C:3124 , HOH C:3248BINDING SITE FOR RESIDUE GXL C1321
23CC5SOFTWAREARG C:126 , GLU C:138 , THR C:150 , ILE C:176 , TYR C:192 , TRP C:198 , HOH C:3249 , ASP D:170 , ASN D:224BINDING SITE FOR RESIDUE GXL C1322
24CC6SOFTWARETYR C:168 , ARG C:177 , GLN C:189 , ASP C:193 , ILE C:227 , MET C:229 , TRP C:245BINDING SITE FOR RESIDUE PG4 C1323
25CC7SOFTWARETHR C:204 , ILE C:205 , ASP C:207 , TYR C:251 , HIS C:252 , ASP C:253 , LYS C:254 , HOH C:3168BINDING SITE FOR RESIDUE PG4 C1324
26CC8SOFTWAREASN A:276 , ARG C:230 , GLN C:242 , GLY C:255 , THR C:256 , ILE C:257 , SER C:305BINDING SITE FOR RESIDUE PGE C1325
27CC9SOFTWAREASN C:287 , THR C:289 , LEU C:307BINDING SITE FOR RESIDUE PEG C1326
28DC1SOFTWAREASN C:22 , LEU C:24 , TYR C:40 , TRP C:44 , ARG C:282 , GLU C:296 , HOH C:3036 , HOH C:3224 , HOH C:3239 , HOH C:3251 , HOH C:3252 , HOH C:3253BINDING SITE FOR RESIDUE GXL C1327
29DC2SOFTWAREGLY D:59 , HOH D:3008 , HOH D:3009 , HOH D:3048 , HOH D:3049 , HOH D:3050BINDING SITE FOR RESIDUE NA D1317
30DC3SOFTWAREARG D:25 , GLU D:37 , LEU D:69 , TYR D:88 , TRP D:94 , HOH D:3074 , HOH D:3212 , HOH D:3213BINDING SITE FOR RESIDUE GIV D1318
31DC4SOFTWAREARG D:73 , GLU D:85 , TYR D:95 , GLY D:97 , GLY D:98 , LEU D:99 , LEU D:123 , LEU D:125 , TRP D:141 , TRP D:146 , HOH D:3214 , HOH D:3215BINDING SITE FOR RESIDUE GXL D1319
32DC5SOFTWAREARG D:126 , GLU D:138 , THR D:150 , ILE D:176 , TYR D:192 , TRP D:198 , HOH D:3128 , HOH D:3217BINDING SITE FOR RESIDUE GXL D1320
33DC6SOFTWARETYR D:168 , ARG D:177 , GLN D:189 , ASP D:193 , TYR D:199 , MET D:229 , TRP D:245BINDING SITE FOR RESIDUE PG4 D1321
34DC7SOFTWAREARG D:230 , GLN D:242 , THR D:256 , ILE D:257 , SER D:305 , HOH D:3170BINDING SITE FOR RESIDUE PGE D1322
35DC8SOFTWAREARG C:208 , ASN D:287 , GLY D:288 , THR D:289 , HOH D:3218BINDING SITE FOR RESIDUE PEG D1323
36DC9SOFTWAREASN D:22 , LEU D:24 , TYR D:40 , TRP D:44 , ARG D:282 , GLU D:296 , HOH D:3026 , HOH D:3192 , HOH D:3205 , HOH D:3220BINDING SITE FOR RESIDUE GXL D1324

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D52)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:278 -Pro A:279
2Pro A:313 -Pro A:314
3Gly B:278 -Pro B:279
4Pro B:313 -Pro B:314
5Gly C:278 -Pro C:279
6Pro C:313 -Pro C:314
7Gly D:278 -Pro D:279
8Pro D:313 -Pro D:314

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D52)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D52)

(-) Exons   (0, 0)

(no "Exon" information available for 4D52)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh......eeeeee..eeeeeee....eeeeeee...eee.hhh.eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee......eeeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeeee...eeeeeeeeee.......eeeee.hhhhh..eeeeee.........eeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d52 A   2 STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYSCIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311    

Chain B from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh......eeeeee..eeeeeee....eeeeeee...eee.....eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee......eeeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeeee...eeeeeeeeee.......eeeee.hhhhh..eeeeee.........eeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d52 B   2 STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYScIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311    
                                                                                                                                       111-CSD                                                                                                                                                                                                        

Chain C from PDB  Type:PROTEIN  Length:312
                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhh......eeeeee..eeeeeee....eeeeeee...eee.hhh.eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee.......eeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeeeeee..eeeeeeeee....eeeeeeee...eeeeeeeeee......eeeeee......eeeeee.........eeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4d52 C   2 STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYScIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVcWDHGKGYHDKGTITPVIQGSEVAIISWGSFNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241  |    251       261       271  ||   283       293       303       313  
                                                                                                                                       111-CSD                                                                                                                              244-CSD                       274|                                      
                                                                                                                                                                                                                                                                                                           277                                      

Chain D from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhh......eeeeee..eeeeeee....eeeeeee...eee.hhh.eeee.......eeeee...eeeeeee.....eeeeeee...eeee.hhhhhh........eeeee........eeeeee....eeeeeee....eeeeeeeee......eeeeee........eeeeeee.....eeeeeee...ee....eeee........eeeeee.......eeeeeee....eeeeeeee...eeeeeeeeee......eeeeee.hhhhh..eeeeee.........eeeeee...eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d52 D   2 STPGAQQVLFRTGIAAVNSTNHLRVYFQDVYGSIRESLYEGSWANGTEKNVIGNAKLGSPVAATSKELKHIRVYTLTEGNTLQEFAYDSGTGWYNGGLGGAKFQVAPYScIAAVFLAGTDALQLRIYAQKPDNTIQEYMWNGDGWKEGTNLGGALPGTGIGATSFRYTDYNGPSIRIWFQTDDLKLVQRAYDPHKGWYPDLVTIFDRAPPRTAIAATSFGAGNSSIYMRIYFVNSDNTIWQVCWDHGKGYHDKGTITPVIQGSEVAIISWGSFANNGPDLRLYFQNGTYISAVSEWVWNRAHGSQLGRSALPPA 315
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311    
                                                                                                                                       111-CSD                                                                                                                                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D52)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D52)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D52)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CSD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GIV  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GXL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PG4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PGE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly A:278 - Pro A:279   [ RasMol ]  
    Gly B:278 - Pro B:279   [ RasMol ]  
    Gly C:278 - Pro C:279   [ RasMol ]  
    Gly D:278 - Pro D:279   [ RasMol ]  
    Pro A:313 - Pro A:314   [ RasMol ]  
    Pro B:313 - Pro B:314   [ RasMol ]  
    Pro C:313 - Pro C:314   [ RasMol ]  
    Pro D:313 - Pro D:314   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4d52
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q4WW81_ASPFU | Q4WW81
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q4WW81_ASPFU | Q4WW81
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4WW81_ASPFU | Q4WW814agi 4agt 4ah4 4aha 4c1y 4d4u 4uou

(-) Related Entries Specified in the PDB File

4d4u CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH LEWISY TETRASACCHARIDE.