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4D52
Biol. Unit 4
Info
Asym.Unit (235 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (61 KB)
Biol.Unit 4 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH L-GALACTOPYRANOSE.
Authors
:
J. Houser, G. Cioci, J. Komarek, M. Wimmerowa, N. Kostlanova, M. Lahman A. Varrot, A. Imberty
Date
:
01 Nov 14 (Deposition) - 11 Mar 15 (Release) - 25 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Houser, J. Komarek, G. Cioci, A. Varrot, A. Imberty, M. Wimmerova
Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites Are Functionally Non- Equivalent.
Acta Crystallogr. , Sect. D V. 71 442 2015
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Hetero Components
(6, 10)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
1b: 3-SULFINOALANINE (CSDb)
1c: 3-SULFINOALANINE (CSDc)
1d: 3-SULFINOALANINE (CSDd)
2a: BETA-L-GALACTOPYRANOSE (GIVa)
2b: BETA-L-GALACTOPYRANOSE (GIVb)
2c: BETA-L-GALACTOPYRANOSE (GIVc)
2d: BETA-L-GALACTOPYRANOSE (GIVd)
2e: BETA-L-GALACTOPYRANOSE (GIVe)
2f: BETA-L-GALACTOPYRANOSE (GIVf)
2g: BETA-L-GALACTOPYRANOSE (GIVg)
2h: BETA-L-GALACTOPYRANOSE (GIVh)
2i: BETA-L-GALACTOPYRANOSE (GIVi)
2j: BETA-L-GALACTOPYRANOSE (GIVj)
2k: BETA-L-GALACTOPYRANOSE (GIVk)
2l: BETA-L-GALACTOPYRANOSE (GIVl)
3a: ALPHA-L-GALACTOPYRANOSE (GXLa)
3b: ALPHA-L-GALACTOPYRANOSE (GXLb)
3c: ALPHA-L-GALACTOPYRANOSE (GXLc)
3d: ALPHA-L-GALACTOPYRANOSE (GXLd)
3e: ALPHA-L-GALACTOPYRANOSE (GXLe)
3f: ALPHA-L-GALACTOPYRANOSE (GXLf)
3g: ALPHA-L-GALACTOPYRANOSE (GXLg)
3h: ALPHA-L-GALACTOPYRANOSE (GXLh)
3i: ALPHA-L-GALACTOPYRANOSE (GXLi)
3j: ALPHA-L-GALACTOPYRANOSE (GXLj)
3k: ALPHA-L-GALACTOPYRANOSE (GXLk)
3l: ALPHA-L-GALACTOPYRANOSE (GXLl)
3m: ALPHA-L-GALACTOPYRANOSE (GXLm)
3n: ALPHA-L-GALACTOPYRANOSE (GXLn)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
6a: TETRAETHYLENE GLYCOL (PG4a)
6b: TETRAETHYLENE GLYCOL (PG4b)
6c: TETRAETHYLENE GLYCOL (PG4c)
6d: TETRAETHYLENE GLYCOL (PG4d)
6e: TETRAETHYLENE GLYCOL (PG4e)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
8a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
1
Mod. Amino Acid
3-SULFINOALANINE
2
GIV
3
Ligand/Ion
BETA-L-GALACTOPYRANOSE
3
GXL
3
Ligand/Ion
ALPHA-L-GALACTOPYRANOSE
4
NA
-1
Ligand/Ion
SODIUM ION
5
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
8
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: CC5 (SOFTWARE)
04: DC2 (SOFTWARE)
05: DC3 (SOFTWARE)
06: DC4 (SOFTWARE)
07: DC5 (SOFTWARE)
08: DC6 (SOFTWARE)
09: DC7 (SOFTWARE)
10: DC8 (SOFTWARE)
11: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:25 , GLU A:37 , LEU A:69 , TYR A:88 , TRP A:94 , HOH A:3057 , HOH A:3131 , HOH A:3132 , HOH A:3337 , HOH A:3338 , THR D:256 , HOH D:3175
BINDING SITE FOR RESIDUE GXL A1316
02
AC2
SOFTWARE
ARG A:25 , GLU A:37 , LEU A:39 , LEU A:69 , TYR A:88 , TRP A:94 , HOH A:3056 , HOH A:3057 , HOH A:3132 , HOH A:3337 , THR D:256 , HOH D:3175
BINDING SITE FOR RESIDUE GIV A2316
03
CC5
SOFTWARE
ARG C:126 , GLU C:138 , THR C:150 , ILE C:176 , TYR C:192 , TRP C:198 , HOH C:3249 , ASP D:170 , ASN D:224
BINDING SITE FOR RESIDUE GXL C1322
04
DC2
SOFTWARE
GLY D:59 , HOH D:3008 , HOH D:3009 , HOH D:3048 , HOH D:3049 , HOH D:3050
BINDING SITE FOR RESIDUE NA D1317
05
DC3
SOFTWARE
ARG D:25 , GLU D:37 , LEU D:69 , TYR D:88 , TRP D:94 , HOH D:3074 , HOH D:3212 , HOH D:3213
BINDING SITE FOR RESIDUE GIV D1318
06
DC4
SOFTWARE
ARG D:73 , GLU D:85 , TYR D:95 , GLY D:97 , GLY D:98 , LEU D:99 , LEU D:123 , LEU D:125 , TRP D:141 , TRP D:146 , HOH D:3214 , HOH D:3215
BINDING SITE FOR RESIDUE GXL D1319
07
DC5
SOFTWARE
ARG D:126 , GLU D:138 , THR D:150 , ILE D:176 , TYR D:192 , TRP D:198 , HOH D:3128 , HOH D:3217
BINDING SITE FOR RESIDUE GXL D1320
08
DC6
SOFTWARE
TYR D:168 , ARG D:177 , GLN D:189 , ASP D:193 , TYR D:199 , MET D:229 , TRP D:245
BINDING SITE FOR RESIDUE PG4 D1321
09
DC7
SOFTWARE
ARG D:230 , GLN D:242 , THR D:256 , ILE D:257 , SER D:305 , HOH D:3170
BINDING SITE FOR RESIDUE PGE D1322
10
DC8
SOFTWARE
ARG C:208 , ASN D:287 , GLY D:288 , THR D:289 , HOH D:3218
BINDING SITE FOR RESIDUE PEG D1323
11
DC9
SOFTWARE
ASN D:22 , LEU D:24 , TYR D:40 , TRP D:44 , ARG D:282 , GLU D:296 , HOH D:3026 , HOH D:3192 , HOH D:3205 , HOH D:3220
BINDING SITE FOR RESIDUE GXL D1324
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Info
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Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (235 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (61 KB)
Header - Biol.Unit 3
Biol.Unit 4 (60 KB)
Header - Biol.Unit 4
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