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4D52
Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (61 KB)
Biol.Unit 4 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FUCOSE BINDING LECTIN FROM ASPERGILLUS FUMIGATUS (AFL) IN COMPLEX WITH L-GALACTOPYRANOSE.
Authors
:
J. Houser, G. Cioci, J. Komarek, M. Wimmerowa, N. Kostlanova, M. Lahman A. Varrot, A. Imberty
Date
:
01 Nov 14 (Deposition) - 11 Mar 15 (Release) - 25 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Houser, J. Komarek, G. Cioci, A. Varrot, A. Imberty, M. Wimmerova
Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites Are Functionally Non- Equivalent.
Acta Crystallogr. , Sect. D V. 71 442 2015
[
close entry info
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Hetero Components
(8, 49)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
1b: 3-SULFINOALANINE (CSDb)
1c: 3-SULFINOALANINE (CSDc)
1d: 3-SULFINOALANINE (CSDd)
2a: BETA-L-GALACTOPYRANOSE (GIVa)
2b: BETA-L-GALACTOPYRANOSE (GIVb)
2c: BETA-L-GALACTOPYRANOSE (GIVc)
2d: BETA-L-GALACTOPYRANOSE (GIVd)
2e: BETA-L-GALACTOPYRANOSE (GIVe)
2f: BETA-L-GALACTOPYRANOSE (GIVf)
2g: BETA-L-GALACTOPYRANOSE (GIVg)
2h: BETA-L-GALACTOPYRANOSE (GIVh)
2i: BETA-L-GALACTOPYRANOSE (GIVi)
2j: BETA-L-GALACTOPYRANOSE (GIVj)
2k: BETA-L-GALACTOPYRANOSE (GIVk)
2l: BETA-L-GALACTOPYRANOSE (GIVl)
3a: ALPHA-L-GALACTOPYRANOSE (GXLa)
3b: ALPHA-L-GALACTOPYRANOSE (GXLb)
3c: ALPHA-L-GALACTOPYRANOSE (GXLc)
3d: ALPHA-L-GALACTOPYRANOSE (GXLd)
3e: ALPHA-L-GALACTOPYRANOSE (GXLe)
3f: ALPHA-L-GALACTOPYRANOSE (GXLf)
3g: ALPHA-L-GALACTOPYRANOSE (GXLg)
3h: ALPHA-L-GALACTOPYRANOSE (GXLh)
3i: ALPHA-L-GALACTOPYRANOSE (GXLi)
3j: ALPHA-L-GALACTOPYRANOSE (GXLj)
3k: ALPHA-L-GALACTOPYRANOSE (GXLk)
3l: ALPHA-L-GALACTOPYRANOSE (GXLl)
3m: ALPHA-L-GALACTOPYRANOSE (GXLm)
3n: ALPHA-L-GALACTOPYRANOSE (GXLn)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
6a: TETRAETHYLENE GLYCOL (PG4a)
6b: TETRAETHYLENE GLYCOL (PG4b)
6c: TETRAETHYLENE GLYCOL (PG4c)
6d: TETRAETHYLENE GLYCOL (PG4d)
6e: TETRAETHYLENE GLYCOL (PG4e)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
8a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
4
Mod. Amino Acid
3-SULFINOALANINE
2
GIV
12
Ligand/Ion
BETA-L-GALACTOPYRANOSE
3
GXL
14
Ligand/Ion
ALPHA-L-GALACTOPYRANOSE
4
NA
3
Ligand/Ion
SODIUM ION
5
PEG
7
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
5
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
3
Ligand/Ion
TRIETHYLENE GLYCOL
8
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:25 , GLU A:37 , LEU A:69 , TYR A:88 , TRP A:94 , HOH A:3057 , HOH A:3131 , HOH A:3132 , HOH A:3337 , HOH A:3338 , THR D:256 , HOH D:3175
BINDING SITE FOR RESIDUE GXL A1316
02
AC2
SOFTWARE
ARG A:25 , GLU A:37 , LEU A:39 , LEU A:69 , TYR A:88 , TRP A:94 , HOH A:3056 , HOH A:3057 , HOH A:3132 , HOH A:3337 , THR D:256 , HOH D:3175
BINDING SITE FOR RESIDUE GIV A2316
03
AC3
SOFTWARE
ASN A:51 , VAL A:52 , TRP A:94 , HOH A:3339
BINDING SITE FOR RESIDUE PEG A1317
04
AC4
SOFTWARE
ARG A:73 , GLU A:85 , TYR A:95 , GLY A:98 , LEU A:99 , LEU A:123 , LEU A:125 , TRP A:141 , TRP A:146 , HOH A:3184 , HOH A:3340 , HOH A:3341
BINDING SITE FOR RESIDUE GXL A1318
05
AC5
SOFTWARE
ARG A:126 , GLU A:138 , THR A:150 , ILE A:176 , TYR A:192 , TRP A:198 , HOH A:3185 , HOH A:3200 , HOH A:3228 , HOH A:3342 , GLU C:49
BINDING SITE FOR RESIDUE GXL A1319
06
AC6
SOFTWARE
TYR A:168 , ARG A:177 , GLN A:189 , ASP A:193 , ILE A:227 , MET A:229 , TRP A:245
BINDING SITE FOR RESIDUE PG4 A1320
07
AC7
SOFTWARE
ARG A:230 , GLN A:242 , PHE A:274 , TRP A:299
BINDING SITE FOR RESIDUE PEG A1321
08
AC8
SOFTWARE
ASN A:22 , LEU A:24 , TYR A:40 , TRP A:44 , ARG A:282 , GLU A:296 , HOH A:3071 , HOH A:3312 , HOH A:3331 , HOH A:3344 , HOH A:3345
BINDING SITE FOR RESIDUE GXL A1322
09
AC9
SOFTWARE
CYS B:244 , ASP B:246 , HIS B:252
BINDING SITE FOR RESIDUE ZN B1317
10
BC1
SOFTWARE
GLY B:59 , HOH B:3010 , HOH B:3011 , HOH B:3057 , HOH B:3058 , HOH B:3059 , HOH B:3198
BINDING SITE FOR RESIDUE NA B1318
11
BC2
SOFTWARE
ARG B:25 , GLU B:37 , LEU B:69 , TYR B:88 , TRP B:94 , PEG B:1320 , HOH B:3033 , HOH B:3086 , HOH B:3237
BINDING SITE FOR RESIDUE GXL B1319
12
BC3
SOFTWARE
GLU B:37 , ASN B:51 , TRP B:94 , GXL B:1319 , HOH B:3048
BINDING SITE FOR RESIDUE PEG B1320
13
BC4
SOFTWARE
ARG B:73 , GLU B:85 , TYR B:95 , GLY B:97 , GLY B:98 , LEU B:99 , LEU B:123 , LEU B:125 , TRP B:141 , TRP B:146 , HOH B:3109 , HOH B:3239
BINDING SITE FOR RESIDUE GXL B1321
14
BC5
SOFTWARE
ASP A:170 , ASN A:224 , HOH A:3225 , HOH A:3264 , ARG B:126 , GLU B:138 , THR B:150 , ILE B:176 , TYR B:192 , TRP B:198 , HOH B:3118 , HOH B:3150
BINDING SITE FOR RESIDUE GXL B1322
15
BC6
SOFTWARE
TYR B:168 , ARG B:177 , GLN B:189 , ASP B:193 , TYR B:199 , ILE B:227 , MET B:229 , TRP B:245
BINDING SITE FOR RESIDUE PG4 B1323
16
BC7
SOFTWARE
ARG B:230 , GLN B:242 , ILE B:257 , PHE B:274 , LEU B:281 , TRP B:299
BINDING SITE FOR RESIDUE PGE B1324
17
BC8
SOFTWARE
HOH B:3217 , HOH B:3241
BINDING SITE FOR RESIDUE PEG B1325
18
BC9
SOFTWARE
ASN B:22 , LEU B:24 , TYR B:40 , TRP B:44 , ARG B:282 , GLU B:296 , HOH B:3030 , HOH B:3210 , HOH B:3231 , HOH B:3242
BINDING SITE FOR RESIDUE GIV B2326
19
CC1
SOFTWARE
GLY C:59 , HOH C:3014 , HOH C:3015 , HOH C:3068 , HOH C:3069
BINDING SITE FOR RESIDUE NA C1318
20
CC2
SOFTWARE
THR B:92 , ARG C:25 , GLU C:37 , LEU C:69 , TYR C:88 , TRP C:94 , PEG C:1320 , HOH C:3041 , HOH C:3096 , HOH C:3246 , HOH C:3247
BINDING SITE FOR RESIDUE GXL C1319
21
CC3
SOFTWARE
GLU C:37 , ASN C:51 , VAL C:52 , TRP C:94 , GXL C:1319
BINDING SITE FOR RESIDUE PEG C1320
22
CC4
SOFTWARE
ARG C:73 , GLU C:85 , TYR C:95 , GLY C:97 , GLY C:98 , LEU C:99 , LEU C:123 , LEU C:125 , TRP C:141 , TRP C:146 , HOH C:3082 , HOH C:3124 , HOH C:3248
BINDING SITE FOR RESIDUE GXL C1321
23
CC5
SOFTWARE
ARG C:126 , GLU C:138 , THR C:150 , ILE C:176 , TYR C:192 , TRP C:198 , HOH C:3249 , ASP D:170 , ASN D:224
BINDING SITE FOR RESIDUE GXL C1322
24
CC6
SOFTWARE
TYR C:168 , ARG C:177 , GLN C:189 , ASP C:193 , ILE C:227 , MET C:229 , TRP C:245
BINDING SITE FOR RESIDUE PG4 C1323
25
CC7
SOFTWARE
THR C:204 , ILE C:205 , ASP C:207 , TYR C:251 , HIS C:252 , ASP C:253 , LYS C:254 , HOH C:3168
BINDING SITE FOR RESIDUE PG4 C1324
26
CC8
SOFTWARE
ASN A:276 , ARG C:230 , GLN C:242 , GLY C:255 , THR C:256 , ILE C:257 , SER C:305
BINDING SITE FOR RESIDUE PGE C1325
27
CC9
SOFTWARE
ASN C:287 , THR C:289 , LEU C:307
BINDING SITE FOR RESIDUE PEG C1326
28
DC1
SOFTWARE
ASN C:22 , LEU C:24 , TYR C:40 , TRP C:44 , ARG C:282 , GLU C:296 , HOH C:3036 , HOH C:3224 , HOH C:3239 , HOH C:3251 , HOH C:3252 , HOH C:3253
BINDING SITE FOR RESIDUE GXL C1327
29
DC2
SOFTWARE
GLY D:59 , HOH D:3008 , HOH D:3009 , HOH D:3048 , HOH D:3049 , HOH D:3050
BINDING SITE FOR RESIDUE NA D1317
30
DC3
SOFTWARE
ARG D:25 , GLU D:37 , LEU D:69 , TYR D:88 , TRP D:94 , HOH D:3074 , HOH D:3212 , HOH D:3213
BINDING SITE FOR RESIDUE GIV D1318
31
DC4
SOFTWARE
ARG D:73 , GLU D:85 , TYR D:95 , GLY D:97 , GLY D:98 , LEU D:99 , LEU D:123 , LEU D:125 , TRP D:141 , TRP D:146 , HOH D:3214 , HOH D:3215
BINDING SITE FOR RESIDUE GXL D1319
32
DC5
SOFTWARE
ARG D:126 , GLU D:138 , THR D:150 , ILE D:176 , TYR D:192 , TRP D:198 , HOH D:3128 , HOH D:3217
BINDING SITE FOR RESIDUE GXL D1320
33
DC6
SOFTWARE
TYR D:168 , ARG D:177 , GLN D:189 , ASP D:193 , TYR D:199 , MET D:229 , TRP D:245
BINDING SITE FOR RESIDUE PG4 D1321
34
DC7
SOFTWARE
ARG D:230 , GLN D:242 , THR D:256 , ILE D:257 , SER D:305 , HOH D:3170
BINDING SITE FOR RESIDUE PGE D1322
35
DC8
SOFTWARE
ARG C:208 , ASN D:287 , GLY D:288 , THR D:289 , HOH D:3218
BINDING SITE FOR RESIDUE PEG D1323
36
DC9
SOFTWARE
ASN D:22 , LEU D:24 , TYR D:40 , TRP D:44 , ARG D:282 , GLU D:296 , HOH D:3026 , HOH D:3192 , HOH D:3205 , HOH D:3220
BINDING SITE FOR RESIDUE GXL D1324
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(0, 0)
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Asym.Unit (235 KB)
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Biol.Unit 1 (63 KB)
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Biol.Unit 2 (61 KB)
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