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(-) Description

Title :  HUMAN PFKFB3 IN COMPLEX WITH A PYRROLOPYRIMIDONE COMPOUND
 
Authors :  S. A. Stgallay, N. Bennett, S. Critchlow, G. Davies, J. E. Debreczeni, N G. Holdgate, N. P. Jones, L. Leach, S. Maman, S. Mcloughlin, M. Preston L. Rigoreau, A. Thomas, G. Walker, J. Walsch, R. A. Ward, E. Wheatley, J
Date :  29 Oct 14  (Deposition) - 20 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.32
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Sugar Kinase, Warburg Effect, Oncology (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Stgallay, N. Bennett, S. Critchlow, G. Davies, J. E. Debreczeni, N. Evans, G. Holdgate, N. P. Jones, L. Leach, S. Maman, S. Mcloughlin, M. Preston, L. Rigoreau, A. Thomas, G. Walker, J. Walsch, R. A. Ward, E. Wheatley, J. Winter
Identifying A Novel Series Of Pfkfb3 Inhibitors As A Metabolic Approach To Treating Cancer From Hts, Biophysical And Biochemical Methods
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE 3
    Chains: A
    EC Number: 2.7.1.105, 3.1.3.46
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 6PF-2-K/FRU-2,6-P2ASE 3,PFK/FBPASE 3,PFKFB3,6PF-2-K/FRU-2,6-P2ASE BRAIN/PLACENTA-TYPE ISOZYME, RENAL CARCINOMA ANTIGEN NY-REN-56,IPFK-2,6-PHOSPHOFRUCTO-2-KINASE, FRUCTOSE-2,6-BISPHOSPHATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1BKV1Ligand/Ion7-(4-BROMOPHENYL)-5-PHENYL-3,7-DIHYDRO-4H-PYRROLO[2,3-D]PYRIMIDIN-4-ONE
2F6P1Ligand/IonFRUCTOSE-6-PHOSPHATE
3PHS1Ligand/IonPHOSPHONIC ACID
4PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
1BKV2Ligand/Ion7-(4-BROMOPHENYL)-5-PHENYL-3,7-DIHYDRO-4H-PYRROLO[2,3-D]PYRIMIDIN-4-ONE
2F6P2Ligand/IonFRUCTOSE-6-PHOSPHATE
3PHS2Ligand/IonPHOSPHONIC ACID
4PO44Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:43 , ALA A:44 , ARG A:45 , GLY A:46 , LYS A:47 , THR A:48 , ASN A:163 , LYS A:168 , HOH A:2027 , HOH A:2028 , HOH A:2293BINDING SITE FOR RESIDUE PO4 A1445
2AC2SOFTWAREASN A:69 , GLY A:71 , ARG A:74 , ARG A:75 , HOH A:2059 , HOH A:2132 , HOH A:2293 , HOH A:2294BINDING SITE FOR RESIDUE PO4 A1446
3AC3SOFTWAREARG A:252 , HIS A:253 , ASN A:259 , HIS A:387 , GLN A:388 , F6P A:1448 , HOH A:2295BINDING SITE FOR RESIDUE PHS A1447
4AC4SOFTWAREILE A:264 , GLY A:265 , GLU A:322 , TYR A:333 , ARG A:347 , LYS A:351 , TYR A:362 , GLN A:388 , ARG A:392 , PHS A:1447 , HOH A:2182 , HOH A:2186 , HOH A:2227 , HOH A:2234 , HOH A:2257 , HOH A:2295BINDING SITE FOR RESIDUE F6P A1448
5AC5SOFTWAREARG A:45 , GLY A:46 , TYR A:49 , ILE A:50 , VAL A:159 , ASN A:163 , GLU A:166 , VAL A:214 , VAL A:217 , LEU A:238 , HOH A:2022BINDING SITE FOR RESIDUE BKV A1449

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D4M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4D4M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D4M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D4M)

(-) Exons   (0, 0)

(no "Exon" information available for 4D4M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......eee..............eeeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhhhhhh....hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhh...............eeeee....eeeee...hhhhhhhhhhhh........eeeee...hhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh.....ee.hhhh...hhhhh..hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhh.....hhhhh.....eeeeeeee..eeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d4m A   1 PLELTQSRVQKIWVPVDHRPSLPRSCNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDKCDRDLSLIKVIDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDSGLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTYEEIRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRER 444
                                    10        20     || 35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435         
                                                    26|                                                                                                                                                                                                                                                                                                                                                                                                                            
                                                     32
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D4M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D4M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D4M)

(-) Gene Ontology  (18, 18)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F263_HUMAN | Q16875: 2axn 2dwo 2dwp 2i1v 3qpu 3qpv 3qpw 4d4j 4d4k 4d4l 4ma4 5ajv 5ajw 5ajx 5ajy 5ajz 5ak0

(-) Related Entries Specified in the PDB File

4d4j HUMAN PFKFB3 IN COMPLEX WITH A PYRROLOPYRIMIDONE COMPOUND
4d4k HUMAN PFKFB3 IN COMPLEX WITH A PYRROLOPYRIMIDONE COMPOUND
4d4l HUMAN PFKFB3 IN COMPLEX WITH A PYRROLOPYRIMIDONE COMPOUND