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(-) Description

Title :  S-GLUTATHIONYLATED PFKFB3
 
Authors :  Y. -H. Lee, M. -S. Seo
Date :  15 Aug 13  (Deposition) - 11 Dec 13  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.23
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  S-Glutathionylated Protein, Rossmann Fold, Phosphoryl Transferase, S- Glutathionylation, Cytosol, Hydrolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Seo, Y. H. Lee
Pfkfb3 Regulates Oxidative Stress Homeostasis Via Its S-Glutathionylation In Cancer.
J. Mol. Biol. V. 426 830 2014
PubMed-ID: 24295899  |  Reference-DOI: 10.1016/J.JMB.2013.11.021

(-) Compounds

Molecule 1 - 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE 3
    Chains: A
    EC Number: 2.7.1.105, 3.1.3.46
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PFKFB3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 6PF-2-K/FRU-2,6-P2ASE 3, PFK/FBPASE 3, 6PF-2-K/FRU-2,6-P2ASE BRAIN/PLACENTA-TYPE ISOZYME, RENAL CARCINOMA ANTIGEN NY-REN-56, IPFK- 2, 6-PHOSPHOFRUCTO-2-KINASE, FRUCTOSE-2,6-BISPHOSPHATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 6)

Asymmetric Unit (5, 6)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3F6P1Ligand/IonFRUCTOSE-6-PHOSPHATE
4GSH1Ligand/IonGLUTATHIONE
5MLA2Ligand/IonMALONIC ACID
Biological Unit 1 (5, 12)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
3F6P2Ligand/IonFRUCTOSE-6-PHOSPHATE
4GSH2Ligand/IonGLUTATHIONE
5MLA4Ligand/IonMALONIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:44 , ARG A:45 , GLY A:46 , LYS A:47 , THR A:48 , TYR A:49 , SER A:152 , ASN A:163 , VAL A:167 , LYS A:168 , VAL A:214 , VAL A:243 , TYR A:424 , HOH A:744 , HOH A:795 , HOH A:836BINDING SITE FOR RESIDUE ADP A 601
2AC2SOFTWAREGLN A:6 , LYS A:11 , ASP A:267 , GLN A:299 , LEU A:300 , ASN A:321 , ARG A:355 , HOH A:764 , HOH A:784BINDING SITE FOR RESIDUE MLA A 602
3AC3SOFTWAREHOH A:847 , HOH A:855BINDING SITE FOR RESIDUE ACY A 603
4AC4SOFTWAREARG A:130 , GLN A:198 , LYS A:204 , CYS A:205 , HOH A:707BINDING SITE FOR RESIDUE GSH A 604
5AC5SOFTWAREPHE A:87 , ARG A:98 , ALA A:125 , THR A:126 , TYR A:193 , HOH A:708BINDING SITE FOR RESIDUE MLA A 605
6AC6SOFTWAREILE A:264 , GLY A:265 , GLU A:322 , TYR A:333 , ARG A:347 , LYS A:351 , TYR A:362 , GLN A:388 , ARG A:392 , HOH A:706 , HOH A:717 , HOH A:719 , HOH A:720 , HOH A:747 , HOH A:755 , HOH A:783BINDING SITE FOR RESIDUE F6P A 606

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MA4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:22 -Pro A:23

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MA4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MA4)

(-) Exons   (0, 0)

(no "Exon" information available for 4MA4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee......eee...........eeeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh.eeeeeeee..hhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhh...............eeeee....eeeee...hhhhhhhhhhhh........eeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhh....eee.hhhh...hhhhh..hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhh....hhhhh.....eeeeeeee..eeeeeeee..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ma4 A   2 LELTQSRVQKIWVPVDHRPSLPNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDKCDRDLSLIKVIDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDSGLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTYEEIRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRERSNPLMRRNS 460
                                    11        21 ||     39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439     ||456    
                                                23|                                                                                                                                                                                                                                                                                                                                                                                                                          445|       
                                                 32                                                                                                                                                                                                                                                                                                                                                                                                                           453
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MA4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MA4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MA4)

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F263_HUMAN | Q16875: 2axn 2dwo 2dwp 2i1v 3qpu 3qpv 3qpw 4d4j 4d4k 4d4l 4d4m 5ajv 5ajw 5ajx 5ajy 5ajz 5ak0

(-) Related Entries Specified in the PDB File

2axn 3qpw