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(-) Description

Title :  HUMAN PFKFB3 IN COMPLEX WITH A PYRROLOPYRIMIDONE COMPOUND
 
Authors :  S. A. Stgallay, N. Bennett, S. Critchlow, G. Davies, J. E. Debreczeni, N G. Holdgate, N. P. Jones, L. Leach, S. Maman, S. Mcloughlin, M. Preston L. Rigoreau, A. Thomas, G. Walker, J. Walsch, R. A. Ward, E. Wheatley, J
Date :  29 Oct 14  (Deposition) - 20 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.16
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Sugar Kinase, Warburg Effect, Oncology (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Stgallay, N. Bennett, S. Critchlow, G. Davies, J. E. Debreczeni, N. Evans, G. Holdgate, N. P. Jones, L. Leach, S. Maman, S. Mcloughlin, M. Preston, L. Rigoreau, A. Thomas, G. Walker, J. Walsch, R. A. Ward, E. Wheatley, J. Winter
Identifying A Novel Series Of Pfkfb3 Inhibitors As A Metabolic Approach To Treating Cancer From Hts, Biophysical And Biochemical Methods
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE 3
    Chains: A
    EC Number: 2.7.1.105, 3.1.3.46
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 6PF-2-K/FRU-2,6-P2ASE 3,PFK/FBPASE 3,PFKFB3,6PF-2-K/FRU-2,6-P2ASE BRAIN/PLACENTA-TYPE ISOZYME, RENAL CARCINOMA ANTIGEN NY-REN-56,IPFK-2,6-PHOSPHOFRUCTO-2-KINASE, FRUCTOSE-2,6-BISPHOSPHATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1BKS1Ligand/Ion5-(4-CHLOROPHENYL)-7-PHENYL-3,7-DIHYDRO-4H-PYRROLO[2,3-D]PYRIMIDIN-4-ONE
2F6P1Ligand/IonFRUCTOSE-6-PHOSPHATE
3PHS1Ligand/IonPHOSPHONIC ACID
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 8)
No.NameCountTypeFull Name
1BKS2Ligand/Ion5-(4-CHLOROPHENYL)-7-PHENYL-3,7-DIHYDRO-4H-PYRROLO[2,3-D]PYRIMIDIN-4-ONE
2F6P2Ligand/IonFRUCTOSE-6-PHOSPHATE
3PHS2Ligand/IonPHOSPHONIC ACID
4PO42Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:252 , HIS A:253 , ASN A:259 , HIS A:387 , GLN A:388 , F6P A:1448BINDING SITE FOR RESIDUE PHS A1446
2AC2SOFTWARELEU A:42 , PRO A:43 , ALA A:44 , ARG A:45 , GLY A:46 , LYS A:47 , THR A:48 , LYS A:168BINDING SITE FOR RESIDUE PO4 A1447
3AC3SOFTWAREILE A:264 , GLY A:265 , GLU A:322 , TYR A:333 , ARG A:347 , LYS A:351 , TYR A:362 , GLN A:388 , ARG A:392 , THR A:440 , PHS A:1446BINDING SITE FOR RESIDUE F6P A1448
4AC4SOFTWAREALA A:44 , ARG A:45 , GLY A:46 , TYR A:49 , ILE A:50 , SER A:152 , VAL A:159 , ASN A:163 , GLU A:166 , VAL A:214 , VAL A:217 , LEU A:238 , VAL A:243BINDING SITE FOR RESIDUE BKS A1449

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D4L)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:27 -Pro A:28

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D4L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D4L)

(-) Exons   (0, 0)

(no "Exon" information available for 4D4L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......eee................eeeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhhhhhh....hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhh...............eeeee....eeeee...hhhhhhhhhhhhhh......eeeee...hhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhh.....ee.hhhh...hhhhh..hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhh.....hhhhh.....eeeeeeee..eeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d4l A   1 PLELTQSRVQKIWVPVDHRPSLPRSCGPNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDKCDRDLSLIKVIDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDSGLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTYEEIRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKLTPVAYGCRVESIYLNVESVCTHRERS 445
                                    10        20       |33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443  
                                                      28|                                                                                                                                                                                                                                                                                                                                                                                                                             
                                                       32
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D4L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D4L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D4L)

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)

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  F263_HUMAN | Q16875
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F263_HUMAN | Q16875: 2axn 2dwo 2dwp 2i1v 3qpu 3qpv 3qpw 4d4j 4d4k 4d4m 4ma4 5ajv 5ajw 5ajx 5ajy 5ajz 5ak0

(-) Related Entries Specified in the PDB File

4d4j HUMAN PFKFB3 IN COMPLEX WITH A PYRROLOPYRIMIDONE COMPOUND
4d4k HUMAN PFKFB3 IN COMPLEX WITH A PYRROLOPYRIMIDONE COMPOUND
4d4m HUMAN PFKFB3 IN COMPLEX WITH A PYRROLOPYRIMIDONE COMPOUND