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(-) Description

Title :  DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN PROST-TRANSLATIONAL MODIFICATION
 
Authors :  D. C. F. Monteiro, V. Patel, C. P. Bartlett, T. D. Grant, S. Nozaki, J. A. G E. H. Snell, H. Niki, A. R. Pearson, M. E. Webb
Date :  02 Mar 14  (Deposition) - 25 Mar 15  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (4x)
Keywords :  Lyase, Coenzyme A, Radiation Damage, Pantothenate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Monteiro, V. Patel, C. P. Bartlett, S. Nozaki, T. D. Grant, J. A. Gowdy, G. S. Thompson, A. P. Kalverda, E. H. Snell, H. Niki, A. R. Pearson, M. E. Webb
The Structure Of The Pand/Panz Protein Complex Reveals Negative Feedback Regulation Of Pantothenate Biosynthesis B Coenzyme A.
Chem. Biol. V. 22 492 2015
PubMed-ID: 25910242  |  Reference-DOI: 10.1016/J.CHEMBIOL.2015.03.017

(-) Compounds

Molecule 1 - ASPARTATE 1-DECARBOXYLASE
    Chains: A
    EC Number: 4.1.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI K-12
    Expression System Plasmid: PRSETA-ADC(T57V)
    Expression System Taxid: 83333
    Expression System Variant: MG1655 PAND-PANZ-(DE3)
    Expression System Vector: PRSETA
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333
    Synonym: ASPARTATE ALPHA-DECARBOXYLASE
 
Molecule 2 - PANZ
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI K-12
    Expression System Plasmid: PET28A-PANZ
    Expression System Taxid: 83333
    Expression System Variant: MG1655 PAND-PANZ-(DE3)
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
3MG1Ligand/IonMAGNESIUM ION
4SCN1Ligand/IonTHIOCYANATE ION
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1ACO4Ligand/IonACETYL COENZYME *A
2CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
3MG-1Ligand/IonMAGNESIUM ION
4SCN4Ligand/IonTHIOCYANATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:102 , TRP B:23 , GLU B:25 , TYR B:26 , SER B:65 , LEU B:66 , ARG B:67 , VAL B:68 , ARG B:73 , ARG B:74 , ARG B:75 , GLY B:76 , VAL B:77 , GLY B:78 , GLN B:79 , GLY B:101 , VAL B:102 , GLU B:103 , VAL B:107 , MET B:108 , PHE B:111 , MG B:1130 , HOH B:2035 , HOH B:2052 , HOH B:2053 , HOH B:2054BINDING SITE FOR RESIDUE ACO B 1129
2AC2SOFTWARETHR B:72 , ARG B:74 , ARG B:75 , GLY B:76 , VAL B:77 , ACO B:1129BINDING SITE FOR RESIDUE MG B 1130
3AC3SOFTWAREGLY A:24 , TRP A:47 , ARG A:54 , ALA A:74 , ALA A:75BINDING SITE FOR RESIDUE SCN A 1127

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1B:94 -B:127

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro B:28 -Ser B:29

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CRZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CRZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4CRZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee..eee.....eeeeehhhhhhhh.....eeeeee.....eeeeeeeee......eeee.hhhhh.....eeeeeeeeeeehhhhh....eeeeee...eeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4crz A   0 SMIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHcASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA 126
                                     9        19        29        39        49        59        69        79        89        99       109       119       
                                                                                                         78-CSO                                            


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhh.............eeeeeeee..eeeeeeeeeee..eeeeeeeee.hhhh..hhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh..eee..eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4crz B   1 MKLTIIRLEKFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARFNERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGVEDRGVMTAFMQALGFTAQQGGWEKCS 128
                                    10        20        30        40        50        60        70        80        90       100       110       120
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CRZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CRZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CRZ)

(-) Gene Ontology  (12, 13)

Asymmetric Unit(hide GO term definitions)

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  4crz
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  PAND_ECOLI | P0A790
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  PANZ_ECOLI | P37613
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  4.1.1.11
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAND_ECOLI | P0A790: 1aw8 1ppy 1pqe 1pqf 1pqh 1pt0 1pt1 1pyq 1pyu 3tm7 4aok 4aon 4azd 4cry 4cs0 4d7z
        PANZ_ECOLI | P37613: 2k5t 4cry 4cs0

(-) Related Entries Specified in the PDB File

4cry DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN POST- TRANSLATIONAL MODIFICATION
4cs0 DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN POST- TRANSLATIONAL MODIFICATION