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(-) Description

Title :  DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN POST-TRANSLATIONAL MODIFICATION
 
Authors :  D. C. F. Monteiro, V. Patel, C. P. Bartlett, T. D. Grant, S. Nozaki, J. A. G E. H. Snell, H. Niki, A. R. Pearson, M. E. Webb
Date :  02 Mar 14  (Deposition) - 25 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym. Unit :  A,B,G
Biol. Unit 1:  A,B,G  (4x)
Keywords :  Lyase, Coenzyme A, Radiation Damage, Pantothenate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. F. Monteiro, V. Patel, C. P. Bartlett, T. D. Grant, S. Nozaki, J. A. Gowdy, E. H. Snell, H. Niki, A. R. Pearson, M. E. Webb
Direct Visualisation Of Strain-Induced Protein Post-Translational Modification
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ASPARTATE 1-DECARBOXYLASE
    Chains: A
    EC Number: 4.1.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI K-12
    Expression System Plasmid: PRSETA-ADC(T57V)
    Expression System Taxid: 83333
    Expression System Variant: MG1655 PAND-PANZ-(DE3)
    Expression System Vector: PRSETA
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333
    Other Details: RESIDUES 1-24 AFTER CLEAVAGE OF POLYPEPTIDE CHAIN BACKBONE BETWEEN RESIDUES G24 AND S25
    Synonym: ASPARTATE ALPHA-DECARBOXYLASE BETA CHAIN
 
Molecule 2 - ASPARTATE 1-DECARBOXYLASE
    Chains: G
    EC Number: 4.1.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI K-12
    Expression System Plasmid: PRSETA-ADC(T57V)
    Expression System Taxid: 83333
    Expression System Variant: MG1655 PAND-PANZ-(DE3)
    Expression System Vector: PRSETA
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333
    Other Details: RESIDUES 25-126 AFTER CLEAVAGE OF POLYPEPTIDE CHAIN BACKBONE BETWEEN RESIDUES G24 AND S25
    Synonym: ASPARTATE ALPHA-DECARBOXYLASE ALPHA CHAIN
 
Molecule 3 - PANZ
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI K-12
    Expression System Plasmid: PRSETA-ADC(T57V)
    Expression System Taxid: 83333
    Expression System Variant: MG1655 PAND-PANZ-(DE3)
    Expression System Vector: PRSETA
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABG
Biological Unit 1 (4x): ABG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2CL1Ligand/IonCHLORIDE ION
3CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
4MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1ACO4Ligand/IonACETYL COENZYME *A
2CL-1Ligand/IonCHLORIDE ION
3CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
4MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP B:23 , GLU B:25 , TYR B:26 , SER B:65 , LEU B:66 , ARG B:67 , VAL B:68 , ARG B:73 , ARG B:74 , ARG B:75 , GLY B:76 , VAL B:77 , GLY B:78 , GLN B:79 , GLY B:101 , VAL B:102 , GLU B:103 , MET B:108 , ALA B:110 , PHE B:111 , MG B:1129 , HOH B:2032 , HOH B:2035 , HOH B:2038 , HOH B:2055 , HOH B:2056 , ARG G:102BINDING SITE FOR RESIDUE ACO B1128
2AC2SOFTWARETHR B:72 , ARG B:73 , ARG B:74 , ARG B:75 , GLY B:76 , VAL B:77 , ACO B:1128BINDING SITE FOR RESIDUE MG B1129
3AC3SOFTWAREHOH A:2004BINDING SITE FOR RESIDUE CL B1130

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1B:94 -B:127

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro B:28 -Ser B:29

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CRY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CRY)

(-) Exons   (0, 0)

(no "Exon" information available for 4CRY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:25
                                                         
               SCOP domains ------------------------- SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee..eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                 4cry A   0 SMIRTMLQGKLHRVKVTHADLHYEG  24
                                     9        19     


Chain B from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhh.............eeeeeeee..eeeeeeeeeee..eeeeeeeee.hhhh..hhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh..eee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cry B   1 MKLTIIRLEKFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARFNERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGVEDRGVMTAFMQALGFTAQQGGWEKC 127
                                    10        20        30        40        50        60        70        80        90       100       110       120       


Chain G from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeehhhhhhhh.....eeeeee.....eeeeeeeee......eeee.hhhhh.....eeeeeeeeeeehhhhh....eeeeee...eeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4cry G  25 SCAIDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIISVNGAAAHcASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA 126
                                    34        44        54        64        74   |    84        94       104       114       124  
                                                                                78-CSO
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CRY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CRY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CRY)

(-) Gene Ontology  (12, 13)

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  4cry
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  4.1.1.11
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAND_ECOLI | P0A790: 1aw8 1ppy 1pqe 1pqf 1pqh 1pt0 1pt1 1pyq 1pyu 3tm7 4aok 4aon 4azd 4crz 4cs0 4d7z
        PANZ_ECOLI | P37613: 2k5t 4crz 4cs0

(-) Related Entries Specified in the PDB File

4crz DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN PROST- TRANSLATIONAL MODIFICATION
4cs0 DIRECT VISUALISATION OF STRAIN-INDUCED PROTEIN POST- TRANSLATIONAL MODIFICATION