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(-) Description

Title :  OPEN CONFORMATION OF ATP-BOUND HSP70 HOMOLOG DNAK
 
Authors :  J. Kopp, M. P. Mayer, I. Sinning
Date :  06 Sep 12  (Deposition) - 14 Nov 12  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Kityk, J. Kopp, I. Sinning, M. P. Mayer
Structure And Dynamics Of The Atp-Bound Open Conformation Of Hsp70 Chaperones
Mol. Cell V. 48 863 2012
PubMed-ID: 23123194  |  Reference-DOI: 10.1016/J.MOLCEL.2012.09.023

(-) Compounds

Molecule 1 - CHAPERONE PROTEIN DNAK
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDMI.1
    Expression System Strain: BB1553
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 64)

Asymmetric Unit (3, 64)
No.NameCountTypeFull Name
1ATP4Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG4Ligand/IonMAGNESIUM ION
3MSE56Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 15)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 15)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 15)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:10 , THR A:11 , THR A:12 , ASN A:13 , LYS A:70 , GLY A:196 , GLY A:197 , GLY A:198 , ALA A:199 , GLY A:229 , GLU A:267 , LYS A:270 , ILE A:271 , SER A:274 , GLY A:341 , GLY A:342 , GLN A:343 , ARG A:345 , MG A:701 , HOH A:2006 , HOH A:2008 , HOH A:2009 , HOH A:2079 , HOH A:2083 , HOH A:2084 , HOH A:2089 , HOH A:2114 , HOH A:2117BINDING SITE FOR RESIDUE ATP A 700
2AC2SOFTWAREATP A:700 , HOH A:2006 , HOH A:2008 , HOH A:2079 , HOH A:2084BINDING SITE FOR RESIDUE MG A 701
3AC3SOFTWAREGLY B:10 , THR B:11 , THR B:12 , ASN B:13 , LYS B:70 , GLY B:196 , GLY B:197 , GLY B:198 , ALA B:199 , GLY B:229 , GLU B:267 , LYS B:270 , ILE B:271 , SER B:274 , GLY B:341 , GLY B:342 , GLN B:343 , ARG B:345 , MG B:701 , HOH B:2005 , HOH B:2006 , HOH B:2078 , HOH B:2082 , HOH B:2088 , HOH B:2119 , HOH B:2120BINDING SITE FOR RESIDUE ATP B 700
4AC4SOFTWAREATP B:700 , HOH B:2004 , HOH B:2005 , HOH B:2078 , HOH B:2082BINDING SITE FOR RESIDUE MG B 701
5AC5SOFTWAREGLY C:10 , THR C:11 , THR C:12 , ASN C:13 , LYS C:70 , GLY C:196 , GLY C:197 , GLY C:198 , ALA C:199 , GLY C:229 , GLU C:267 , LYS C:270 , ILE C:271 , SER C:274 , GLY C:341 , GLY C:342 , GLN C:343 , ARG C:345 , MG C:701 , HOH C:2002 , HOH C:2003 , HOH C:2004 , HOH C:2072 , HOH C:2075 , HOH C:2081 , HOH C:2094BINDING SITE FOR RESIDUE ATP C 700
6AC6SOFTWAREATP C:700 , HOH C:2002 , HOH C:2003 , HOH C:2072 , HOH C:2075BINDING SITE FOR RESIDUE MG C 701
7AC7SOFTWAREGLY D:10 , THR D:11 , THR D:12 , ASN D:13 , LYS D:70 , GLY D:196 , GLY D:197 , GLY D:198 , ALA D:199 , GLY D:229 , GLU D:267 , LYS D:270 , ILE D:271 , SER D:274 , GLY D:341 , GLY D:342 , GLN D:343 , ARG D:345 , MG D:701 , HOH D:2002 , HOH D:2003 , HOH D:2049 , HOH D:2052 , HOH D:2053 , HOH D:2065BINDING SITE FOR RESIDUE ATP D 700
8AC8SOFTWAREATP D:700 , HOH D:2002 , HOH D:2003 , HOH D:2049 , HOH D:2053BINDING SITE FOR RESIDUE MG D 701

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:47 -A:529
2B:47 -B:529
3C:47 -C:529
4D:47 -D:529

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Gly A:184 -Thr A:185
2Ile A:418 -Pro A:419
3Ile B:418 -Pro B:419
4Ile C:418 -Pro C:419
5Ile D:418 -Pro D:419

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4B9Q)

(-) PROSITE Motifs  (3, 12)

Asymmetric Unit (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HSP70_1PS00297 Heat shock hsp70 proteins family signature 1.DNAK_ECOLI7-14
 
 
 		  4A:7-14
B:7-14
C:7-14
D:7-14
2HSP70_2PS00329 Heat shock hsp70 proteins family signature 2.DNAK_ECOLI192-205
 
 
 		  4A:192-205
B:192-205
C:192-205
D:192-205
3HSP70_3PS01036 Heat shock hsp70 proteins family signature 3.DNAK_ECOLI337-351
 
 
 		  4A:337-351
B:337-351
C:337-351
D:337-351
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HSP70_1PS00297 Heat shock hsp70 proteins family signature 1.DNAK_ECOLI7-14
 
 
 		  1A:7-14
-
-
-
2HSP70_2PS00329 Heat shock hsp70 proteins family signature 2.DNAK_ECOLI192-205
 
 
 		  1A:192-205
-
-
-
3HSP70_3PS01036 Heat shock hsp70 proteins family signature 3.DNAK_ECOLI337-351
 
 
 		  1A:337-351
-
-
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HSP70_1PS00297 Heat shock hsp70 proteins family signature 1.DNAK_ECOLI7-14
 
 
 		  1-
B:7-14
-
-
2HSP70_2PS00329 Heat shock hsp70 proteins family signature 2.DNAK_ECOLI192-205
 
 
 		  1-
B:192-205
-
-
3HSP70_3PS01036 Heat shock hsp70 proteins family signature 3.DNAK_ECOLI337-351
 
 
 		  1-
B:337-351
-
-
Biological Unit 3 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HSP70_1PS00297 Heat shock hsp70 proteins family signature 1.DNAK_ECOLI7-14
 
 
 		  1-
-
C:7-14
-
2HSP70_2PS00329 Heat shock hsp70 proteins family signature 2.DNAK_ECOLI192-205
 
 
 		  1-
-
C:192-205
-
3HSP70_3PS01036 Heat shock hsp70 proteins family signature 3.DNAK_ECOLI337-351
 
 
 		  1-
-
C:337-351
-
Biological Unit 4 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HSP70_1PS00297 Heat shock hsp70 proteins family signature 1.DNAK_ECOLI7-14
 
 
 		  1-
-
-
D:7-14
2HSP70_2PS00329 Heat shock hsp70 proteins family signature 2.DNAK_ECOLI192-205
 
 
 		  1-
-
-
D:192-205
3HSP70_3PS01036 Heat shock hsp70 proteins family signature 3.DNAK_ECOLI337-351
 
 
 		  1-
-
-
D:337-351

(-) Exons   (0, 0)

(no "Exon" information available for 4B9Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:601
 aligned with DNAK_ECOLI | P0A6Y8 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:601
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601 
           DNAK_ECOLI     2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 602
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeeeeee..eeee.........ee..eee.....eeehhhhhhh...hhh.ee.hhhhh......hhhhhhhhh....eeee.....eeeee..eeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhh......eeeeeeee....eeeeeeeeee....eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee....eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh....eeee......eeeee...eeeeee.......eeeeeee........eeeeeeee.....hhhheeeeeeeee...........eeeeeee.....eeeeeee.....ee..eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----HSP70_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSP70_2       -----------------------------------------------------------------------------------------------------------------------------------HSP70_3        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4b9q A   2 GKIIGIDLGTTNSCVAImDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSImPFKIIAADNGDAWVEVKGQKmAPPQISAEVLKKmKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAmQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHmNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRmPmVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETmGGVmTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGmPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKmVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKmQELAQVSQKLmEIA 602
                                    11       |21        31        41        51        61        71        81       |91       101       111       121 |     131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291    |  301       311       321       331       341    | |351       361       371       381       391       401  |   |411       421       431       441       451       461       471       481       491       501       511   |   521       531       541       551       561       571       581      |591       601 
                                            19-MSE                                                                89-MSE              110-MSE      123-MSE                                                                                                                                 259-MSE                              296-MSE                                           346-MSE                                                   404-MSE                                                          469-MSE                                       515-MSE                                                                  588-MSE    599-MSE
                                                                                                                                                                                                                                                                                                                                                                                    348-MSE                                                     408-MSE                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:597
 aligned with DNAK_ECOLI | P0A6Y8 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:604
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601    
           DNAK_ECOLI     2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQ 605
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeeeee..eeee.........ee..eee.....eeehhhhhhh...hhh.ee.hhhhh......hhhhhhhhh....eeee.....eeeee..eeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhh.---..eeeeeeee....eeeeeeeeee....eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh....eeee......eeeee...eeeeee.......eeeeeee........eeeeeeee.....hhhheeeeeeeee..----.....eeeeeee.....eeeeeee.....ee.eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----HSP70_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSP70_2       -----------------------------------------------------------------------------------------------------------------------------------HSP70_3        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4b9q B   2 GKIIGIDLGTTNSCVAImDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSImPFKIIAADNGDAWVEVKGQKmAPPQISAEVLKKmKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD---GNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAmQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHmNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRmPmVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETmGGVmTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGI----RGmPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKmVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKmQELAQVSQKLmEIAQQQ 605
                                    11       |21        31        41        51        61        71        81       |91       101       111       121 |     131       141       151       161       171       181|   |  191       201       211       221       231       241       251       261       271       281       291    |  301       311       321       331       341    | |351       361       371       381       391       401  |   |411       421       431       441       451       461|    | 471       481       491       501       511   |   521       531       541       551       561       571       581      |591       601    
                                            19-MSE                                                                89-MSE              110-MSE      123-MSE                                                    182 186                                                                      259-MSE                              296-MSE                                           346-MSE                                                   404-MSE                                                   462  467 |                                           515-MSE                                                                  588-MSE    599-MSE  
                                                                                                                                                                                                                                                                                                                                                                                    348-MSE                                                     408-MSE                                                      469-MSE                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:595
 aligned with DNAK_ECOLI | P0A6Y8 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:602
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601  
           DNAK_ECOLI     2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQ 603
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeeeeee..eeee.........ee..eee.....eeehhhhhhhh..hhh.ee.hhhhh......hhhhhhhhh....eeee.....eeeee..eeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhh-------.eeeeeee....eeeeeeeeee....eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh....eeeeeeeeeeee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh....eeee......eeeee...eeeeee.......eeeeeee........eeeeeeee.....hhhheeeeeeeee...........eeeeeee.....eeeeeee.....ee..eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----HSP70_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSP70_2       -----------------------------------------------------------------------------------------------------------------------------------HSP70_3        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4b9q C   2 GKIIGIDLGTTNSCVAImDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSImPFKIIAADNGDAWVEVKGQKmAPPQISAEVLKKmKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG-------RTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAmQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHmNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRmPmVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETmGGVmTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGmPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKmVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKmQELAQVSQKLmEIAQ 603
                                    11       |21        31        41        51        61        71        81       |91       101       111       121 |     131       141       151       161       171        |-      |191       201       211       221       231       241       251       261       271       281       291    |  301       311       321       331       341    | |351       361       371       381       391       401  |   |411       421       431       441       451       461       471       481       491       501       511   |   521       531       541       551       561       571       581      |591       601  
                                            19-MSE                                                                89-MSE              110-MSE      123-MSE                                                  180     188                                                                    259-MSE                              296-MSE                                           346-MSE                                                   404-MSE                                                          469-MSE                                       515-MSE                                                                  588-MSE    599-MSE
                                                                                                                                                                                                                                                                                                                                                                                    348-MSE                                                     408-MSE                                                                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:595
 aligned with DNAK_ECOLI | P0A6Y8 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:604
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601    
           DNAK_ECOLI     2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQ 605
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeeeeee..eeee.........ee..eee.....eeehhhhhhhh..hhh.ee.hhhhh......hhhhhhhhh....eeee.....eeeee..eeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhh.----..eeeeeeee....eeeeeeeeee....eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh....eeee......eeeee...eeeeee.......eeeeeee........eeeeeeee.....hhhheeeeeeeee..-----....eeeeeee.....eeeeeee.....ee..eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----HSP70_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSP70_2       -----------------------------------------------------------------------------------------------------------------------------------HSP70_3        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4b9q D   2 GKIIGIDLGTTNSCVAImDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSImPFKIIAADNGDAWVEVKGQKmAPPQISAEVLKKmKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL----GNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAmQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHmNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRmPmVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETmGGVmTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGI-----GmPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKmVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKmQELAQVSQKLmEIAQQQ 605
                                    11       |21        31        41        51        61        71        81       |91       101       111       121 |     131       141       151       161       171       181    |  191       201       211       221       231       241       251       261       271       281       291    |  301       311       321       331       341    | |351       361       371       381       391       401  |   |411       421       431       441       451       461|     |471       481       491       501       511   |   521       531       541       551       561       571       581      |591       601    
                                            19-MSE                                                                89-MSE              110-MSE      123-MSE                                                   181  186                                                                      259-MSE                              296-MSE                                           346-MSE                                                   404-MSE                                                   462   468|                                           515-MSE                                                                  588-MSE    599-MSE  
                                                                                                                                                                                                                                                                                                                                                                                    348-MSE                                                     408-MSE                                                      469-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4B9Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4B9Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4B9Q)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (DNAK_ECOLI | P0A6Y8)
molecular function
    GO:0043531    ADP binding    Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0044183    protein binding involved in protein folding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) that contributes to the process of protein folding.
    GO:0016989    sigma factor antagonist activity    The function of binding to a sigma factor and stopping, preventing or reducing the rate of its transcriptional activity.
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0034620    cellular response to unfolded protein    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
    GO:0070389    chaperone cofactor-dependent protein refolding    The process of assisting in the restoration of the biological activity of an unfolded or misfolded protein, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release.
    GO:0051085    chaperone mediated protein folding requiring cofactor    The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release.
    GO:0006461    protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex.
    GO:0043241    protein complex disassembly    The disaggregation of a protein complex into its constituent components. Protein complexes may have other associated non-protein prosthetic groups, such as nucleic acids, metal ions or carbohydrate groups.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:1903506    regulation of nucleic acid-templated transcription    Any process that modulates the frequency, rate or extent of nucleic acid-templated transcription.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  4b9q
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  DNAK_ECOLI | P0A6Y8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DNAK_ECOLI | P0A6Y8: 1bpr 1dg4 1dkg 1dkx 1dky 1dkz 1q5l 2bpr 2kho 3dpo 3dpp 3dpq 3qnj 4e81 4ezn 4ezo 4ezp 4ezq 4ezr 4ezs 4ezt 4ezu 4ezv 4ezw 4ezx 4ezy 4ezz 4f00 4f01 4hy9 4hyb 4jn4 4jne 4jnf 4jwc 4jwd 4jwe 4jwi 4r5g 4r5i 4r5j 4r5k 4r5l

(-) Related Entries Specified in the PDB File

1bpr NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, MINIMIZED AVERAGE STRUCTURE
1dg4 NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK IN THE APO FORM
1dkg CRYSTAL STRUCTURE OF THE NUCLEOTIDE EXCHANGE FACTOR GRPE BOUND TO THE ATPASE DOMAIN OF THE MOLECULAR CHAPERONE DNAK
1dkx THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 SELENOMETHIONYL CRYSTALS
1dky THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS
1dkz THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 NATIVE CRYSTALS
1q5l NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK BOUND TO THE PEPTIDE NRLLLTG
2bpr NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, 25 STRUCTURES