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(-) Description

Title :  HUMAN MYELOPEROXIDASE INACTIVATED BY TX5
 
Authors :  A. K. Tiden, T. Sjogren, M. Svensson, A. Bernlind, R. Senthilmohan, F. A H. Norman, P. O. Markgren, S. Gustavsson, S. Schmidt, S. Lundquist, L. N. J. Magon, G. N. Jameson, H. Eriksson, A. J. Kettle
Date :  21 Jun 11  (Deposition) - 31 Aug 11  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B,D  (1x)
Biol. Unit 2:  A,C  (1x)
Keywords :  Oxidoreductase, Enzyme Inactivation, Inflammation, Neutrophil, Reactive Oxygen Species (Ros), Hypochlorous Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. K. Tiden, T. Sjogren, M. Svensson, A. Bernlind, R. Senthilmohan, F. Auchere, H. Norman, P. O. Markgren, S. Gustavsson, S. Schmidt, S. Lundquist, L. V. Forbes, N. J. Magon, L. N. Paton, G. N. Jameson, H. Eriksson, A. J. Kettle
2-Thioxanthines Are Mechanism-Based Inactivators Of Myeloperoxidase That Block Oxidative Stress During Inflammation.
J. Biol. Chem. V. 286 37578 2011
PubMed-ID: 21880720  |  Reference-DOI: 10.1074/JBC.M111.266981

(-) Compounds

Molecule 1 - MYELOPEROXIDASE LIGHT CHAIN
    AtccCCL240
    Cell LineHL-60
    ChainsA, B
    EC Number1.11.2.2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - MYELOPEROXIDASE HEAVY CHAIN
    AtccCCL240
    Cell LineHL-60
    ChainsC, D
    EC Number1.11.2.2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x) B D
Biological Unit 2 (1x)A C 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (10, 30)

Asymmetric Unit (10, 30)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2BMA2Ligand/IonBETA-D-MANNOSE
3CA2Ligand/IonCALCIUM ION
4CL2Ligand/IonCHLORIDE ION
5CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
6FUC1Ligand/IonALPHA-L-FUCOSE
7HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
8NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
9PVW2Ligand/Ion3-(2-METHOXYETHYL)-2-THIOXO-1,2,3,7-TETRAHYDRO-6H-PURIN-6-ONE
10SO43Ligand/IonSULFATE ION
Biological Unit 1 (7, 12)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2BMA1Ligand/IonBETA-D-MANNOSE
3CA-1Ligand/IonCALCIUM ION
4CL-1Ligand/IonCHLORIDE ION
5CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
6FUC-1Ligand/IonALPHA-L-FUCOSE
7HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
8NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
9PVW1Ligand/Ion3-(2-METHOXYETHYL)-2-THIOXO-1,2,3,7-TETRAHYDRO-6H-PURIN-6-ONE
10SO41Ligand/IonSULFATE ION
Biological Unit 2 (8, 14)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2BMA1Ligand/IonBETA-D-MANNOSE
3CA-1Ligand/IonCALCIUM ION
4CL-1Ligand/IonCHLORIDE ION
5CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
6FUC1Ligand/IonALPHA-L-FUCOSE
7HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
8NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
9PVW1Ligand/Ion3-(2-METHOXYETHYL)-2-THIOXO-1,2,3,7-TETRAHYDRO-6H-PURIN-6-ONE
10SO42Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:87 , GLY A:90 , GLN A:91 , ASP A:94 , ASP A:98 , PHE A:99 , THR A:100 , PVW A:606 , HOH A:2040 , GLU C:242 , MET C:243 , THR C:329 , PHE C:332 , ARG C:333 , GLY C:335 , HIS C:336 , ILE C:339 , PHE C:365 , LEU C:417 , LEU C:420 , ARG C:424BINDING SITE FOR RESIDUE HEM A 605
02AC2SOFTWAREGLU A:102 , HEM A:605 , HOH A:2041 , ARG C:239 , GLU C:242 , PHE C:407 , HOH C:2043BINDING SITE FOR RESIDUE PVW A 606
03AC3SOFTWAREMET B:87 , GLY B:90 , GLN B:91 , ASP B:94 , ASP B:98 , PHE B:99 , THR B:100 , PVW B:606 , HOH B:2038 , HOH B:2042 , HOH B:2043 , GLU D:242 , MET D:243 , TYR D:296 , THR D:329 , PHE D:332 , ARG D:333 , GLY D:335 , HIS D:336 , ILE D:339 , PHE D:407 , LEU D:417 , ARG D:424BINDING SITE FOR RESIDUE HEM B 605
04AC4SOFTWAREHEM B:605 , ARG D:239 , GLU D:242 , PHE D:407BINDING SITE FOR RESIDUE PVW B 606
05AC5SOFTWARETHR C:304 , LYS C:486 , ARG C:487 , HOH C:2051BINDING SITE FOR RESIDUE SO4 C 1579
06AC6SOFTWAREASP A:96 , THR C:168 , PHE C:170 , ASP C:172 , SER C:174BINDING SITE FOR RESIDUE CA C 1580
07AC7SOFTWARETRP A:32 , ASN C:326 , VAL C:327 , TRP C:436BINDING SITE FOR RESIDUE CL C 1581
08AC8SOFTWAREARG C:229 , THR C:447 , GLY C:449 , GLN C:450BINDING SITE FOR RESIDUE SO4 C 1582
09AC9SOFTWAREARG C:525BINDING SITE FOR RESIDUE ACT C 1583
10BC1SOFTWAREPRO C:124 , ARG C:148 , ARG C:161BINDING SITE FOR RESIDUE ACT C 1584
11BC2SOFTWAREPRO C:303 , ARG C:307 , ARG C:487BINDING SITE FOR RESIDUE ACT C 1585
12BC3SOFTWARETHR D:304 , LYS D:486 , ARG D:487BINDING SITE FOR RESIDUE SO4 D 1579
13BC4SOFTWAREASP B:96 , THR D:168 , PHE D:170 , ASP D:172 , SER D:174BINDING SITE FOR RESIDUE CA D 1580
14BC5SOFTWAREARG B:31 , TRP B:32 , VAL D:327 , TRP D:436BINDING SITE FOR RESIDUE CL D 1581
15BC6SOFTWAREPRO D:124 , ARG D:148 , ARG D:161BINDING SITE FOR RESIDUE ACT D 1582
16BC7SOFTWAREMET D:522 , ARG D:525BINDING SITE FOR RESIDUE ACT D 1583
17BC8SOFTWAREPRO D:303 , ARG D:307 , ARG D:487BINDING SITE FOR RESIDUE ACT D 1584
18BC9SOFTWAREASN C:189 , ASN C:192 , ALA C:198 , VAL C:199 , GLN C:201 , HOH C:2023 , HOH C:2094BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 189 RESIDUES 1620 TO 1620
19CC1SOFTWAREASN C:225 , HOH C:2037 , HOH C:2095BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 225 RESIDUES 1630 TO 1630
20CC2SOFTWARELEU B:33 , ASN C:317 , SER C:319 , VAL C:320 , HOH C:2096 , HOH C:2097 , HOH C:2098 , HOH C:2099 , TYR D:309 , ARG D:438 , PHE D:439 , GLY D:441BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 317 RESIDUES 1640 TO 1645
21CC3SOFTWAREASN D:189 , ASN D:192 , ALA D:198 , VAL D:199 , GLN D:201BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 189 RESIDUES 2620 TO 2620
22CC4SOFTWAREASN D:225 , TRP D:369 , LEU D:373BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 225 RESIDUES 2630 TO 2630
23CC5SOFTWARELEU A:33 , TYR C:309 , PHE C:439 , GLY C:441 , HOH C:2075 , ARG D:314 , ASN D:317 , SER D:319 , VAL D:320BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 317 RESIDUES 2640 TO 2642

(-) SS Bonds  (13, 13)

Asymmetric Unit
No.Residues
1A:1 -A:14
2B:1 -B:14
3C:115 -C:125
4C:119 -C:143
5C:153 -D:153
6C:221 -C:232
7C:440 -C:497
8C:538 -C:564
9D:115 -D:125
10D:119 -D:143
11D:221 -D:232
12D:440 -D:497
13D:538 -D:564

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Pro C:123 -Pro C:124
2Glu C:354 -Pro C:355
3Asn C:549 -Asn C:550
4Tyr C:557 -Pro C:558
5Pro D:123 -Pro D:124
6Glu D:354 -Pro D:355
7Asn D:549 -Asn D:550
8Tyr D:557 -Pro D:558

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (8, 16)

Asymmetric Unit (8, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_015377Y173CPERM_HUMANDisease (MPOD)78950939A/BY7C
2UniProtVAR_015378M251TPERM_HUMANDisease (MPOD)56378716A/BM85T
3UniProtVAR_036517R447QPERM_HUMANUnclassified762688992C/DR281Q
4CancerSNPVAR_PERM_HUMAN_CCDS11604_1_01 *R447QPERM_HUMANDisease (Colorectal cancer)  ---C/DR281Q
5UniProtVAR_015379R569WPERM_HUMANDisease (MPOD)119468010C/DR403W
6UniProtVAR_023996R604CPERM_HUMANPolymorphism35670089C/DR438C
7UniProtVAR_023997E683QPERM_HUMANPolymorphism35702888C/DE517Q
8UniProtVAR_012066I717VPERM_HUMANPolymorphism2759C/DI551V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (8, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_015377Y173CPERM_HUMANDisease (MPOD)78950939BY7C
2UniProtVAR_015378M251TPERM_HUMANDisease (MPOD)56378716BM85T
3UniProtVAR_036517R447QPERM_HUMANUnclassified762688992DR281Q
4CancerSNPVAR_PERM_HUMAN_CCDS11604_1_01 *R447QPERM_HUMANDisease (Colorectal cancer)  ---DR281Q
5UniProtVAR_015379R569WPERM_HUMANDisease (MPOD)119468010DR403W
6UniProtVAR_023996R604CPERM_HUMANPolymorphism35670089DR438C
7UniProtVAR_023997E683QPERM_HUMANPolymorphism35702888DE517Q
8UniProtVAR_012066I717VPERM_HUMANPolymorphism2759DI551V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (8, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_015377Y173CPERM_HUMANDisease (MPOD)78950939AY7C
2UniProtVAR_015378M251TPERM_HUMANDisease (MPOD)56378716AM85T
3UniProtVAR_036517R447QPERM_HUMANUnclassified762688992CR281Q
4CancerSNPVAR_PERM_HUMAN_CCDS11604_1_01 *R447QPERM_HUMANDisease (Colorectal cancer)  ---CR281Q
5UniProtVAR_015379R569WPERM_HUMANDisease (MPOD)119468010CR403W
6UniProtVAR_023996R604CPERM_HUMANPolymorphism35670089CR438C
7UniProtVAR_023997E683QPERM_HUMANPolymorphism35702888CE517Q
8UniProtVAR_012066I717VPERM_HUMANPolymorphism2759CI551V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PEROXIDASE_1PS00435 Peroxidases proximal heme-ligand signature.PERM_HUMAN408-418
 
  2C:242-252
D:242-252
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PEROXIDASE_1PS00435 Peroxidases proximal heme-ligand signature.PERM_HUMAN408-418
 
  1-
D:242-252
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PEROXIDASE_1PS00435 Peroxidases proximal heme-ligand signature.PERM_HUMAN408-418
 
  1C:242-252
-

(-) Exons   (9, 20)

Asymmetric Unit (9, 20)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002252751ENSE00001151667chr17:56358296-56357966331PERM_HUMAN1-52520--
1.2ENST000002252752ENSE00000739393chr17:56357820-5635772794PERM_HUMAN52-83320--
1.3ENST000002252753ENSE00000739378chr17:56357375-56357200176PERM_HUMAN83-142600--
1.4aENST000002252754aENSE00000739375chr17:56357007-56356884124PERM_HUMAN142-183422A:1-17
B:1-17
-
-
17
17
-
-
1.4cENST000002252754cENSE00000739356chr17:56356787-56356658130PERM_HUMAN183-226442A:17-60
B:17-60
-
-
44
44
-
-
1.5ENST000002252755ENSE00000480273chr17:56356575-56356369207PERM_HUMAN227-295694A:61-104
B:61-104
C:113-129
D:113-129
44
44
17
17
1.6ENST000002252756ENSE00000480274chr17:56355506-56355188319PERM_HUMAN296-4021072-
-
C:130-236
D:130-236
-
-
107
107
1.7ENST000002252757ENSE00000739352chr17:56353063-56352903161PERM_HUMAN402-455542-
-
C:236-289
D:236-289
-
-
54
54
1.9ENST000002252759ENSE00000480276chr17:56351030-56350775256PERM_HUMAN456-541862-
-
C:290-375
D:290-375
-
-
86
86
1.10ENST0000022527510ENSE00001743415chr17:56350279-56350109171PERM_HUMAN541-598582-
-
C:375-432
D:375-432
-
-
58
58
1.11ENST0000022527511ENSE00000739347chr17:56349253-56349016238PERM_HUMAN598-677802-
-
C:432-511
D:432-511
-
-
80
80
1.12ENST0000022527512ENSE00001151664chr17:56348224-563472171008PERM_HUMAN677-745692-
-
C:511-578
D:511-578
-
-
68
68

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:104
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:104
                                   176       186       196       206       216       226       236       246       256       266    
           PERM_HUMAN   167 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 270
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................ee...............................hhhhhhhhhh..hhhhh.eeeeeehhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------C-----------------------------------------------------------------------------T------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4a        -------------------------------------------Exon 1.5  PDB: A:61-104 UniProt: 227-295     Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.4c  PDB: A:17-60 UniProt: 183-226    -------------------------------------------- Transcript 1 (2)
                 3zs1 A   1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 104
                                    10        20        30        40        50        60        70        80        90       100    

Chain B from PDB  Type:PROTEIN  Length:104
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:104
                                   176       186       196       206       216       226       236       246       256       266    
           PERM_HUMAN   167 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 270
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................ee...............................hhhhhhhhhh..hhhhh.eeeeeehhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------C-----------------------------------------------------------------------------T------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4a        -------------------------------------------Exon 1.5  PDB: B:61-104 UniProt: 227-295     Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.4c  PDB: B:17-60 UniProt: 183-226    -------------------------------------------- Transcript 1 (2)
                 3zs1 B   1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 104
                                    10        20        30        40        50        60        70        80        90       100    

Chain C from PDB  Type:PROTEIN  Length:466
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:466
                                   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738      
           PERM_HUMAN   279 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA 744
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............ee.............ee...................ee.......hhhhhh.hhhhhhhh...............................hhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh..eee.............eee.hhh...hhhhhhh..hhhhhhhhhhheee........hhhhhh...........hhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhh...eee.............eee.hhh....hhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-------------------------------------------------------------------------------------------------------------------------W----------------------------------C------------------------------------------------------------------------------Q---------------------------------V--------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5         Exon 1.6  PDB: C:130-236 UniProt: 296-402                                                                  ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.10  PDB: C:375-432 UniProt: 541-598                ------------------------------------------------------------------------------Exon 1.12  PDB: C:511-578 UniProt: 677-745 [INCOMPLETE]              Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: C:236-289 UniProt: 402-455             Exon 1.9  PDB: C:290-375 UniProt: 456-541                                             --------------------------------------------------------Exon 1.11  PDB: C:432-511 UniProt: 598-677                                      ------------------------------------------------------------------- Transcript 1 (2)
                 3zs1 C 113 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRScPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA 578
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572      
                                                               150-CSO                                                                                                                                                                                                                                                                                                                                                                                                                                        

Chain D from PDB  Type:PROTEIN  Length:466
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:466
                                   288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738      
           PERM_HUMAN   279 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA 744
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................................ee.......hhhhhh.hhhhhhhh................................hhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh..eee.............eee.hhh..hhhhhhhh..hhhhhhhhhh.eee........hhhhhh...........hhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhh...eee.............eee.hhh....hhhhh.. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-------------------------------------------------------------------------------------------------------------------------W----------------------------------C------------------------------------------------------------------------------Q---------------------------------V--------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5         Exon 1.6  PDB: D:130-236 UniProt: 296-402                                                                  ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.10  PDB: D:375-432 UniProt: 541-598                ------------------------------------------------------------------------------Exon 1.12  PDB: D:511-578 UniProt: 677-745 [INCOMPLETE]              Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: D:236-289 UniProt: 402-455             Exon 1.9  PDB: D:290-375 UniProt: 456-541                                             --------------------------------------------------------Exon 1.11  PDB: D:432-511 UniProt: 598-677                                      ------------------------------------------------------------------- Transcript 1 (2)
                 3zs1 D 113 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRScPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASWREA 578
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572      
                                                               150-CSO                                                                                                                                                                                                                                                                                                                                                                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZS1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZS1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZS1)

(-) Gene Ontology  (30, 30)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PERM_HUMAN | P05164)
molecular function
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0042744    hydrogen peroxide catabolic process    The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
    GO:0002149    hypochlorous acid biosynthetic process    The chemical reactions and pathways resulting in the formation of hypochlorous acid.
    GO:0034374    low-density lipoprotein particle remodeling    The acquisition, loss or modification of a protein or lipid within a low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0044130    negative regulation of growth of symbiont in host    Any process in which the symbiont stops, prevents or reduces its increase in size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019430    removal of superoxide radicals    Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
    GO:0002679    respiratory burst involved in defense response    A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
    GO:0032094    response to food    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat.
    GO:1990268    response to gold nanoparticle    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gold nanoparticle stimulus.
    GO:0032496    response to lipopolysaccharide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0009612    response to mechanical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0001878    response to yeast    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a yeast species.
cellular component
    GO:0042582    azurophil granule    Primary lysosomal granule found in neutrophil granulocytes. Contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0030141    secretory granule    A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PERM_HUMAN | P051641cxp 1d2v 1d5l 1d7w 1dnu 1dnw 1mhl 1myp 3f9p 3zs0 4c1m 4dl1 4ejx 5fiw 5mfa

(-) Related Entries Specified in the PDB File

1cxp CRYOGENIC CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE ISOFORM C
1d2v CRYSTAL STRUCTURE OF BROMIDE-BOUND HUMAN MYELOPEROXIDASE ISOFORM C AT PH 5.5
1d5l CRYSTAL STRUCTURE OF CYANIDE-BOUND HUMAN MYELOPEROXIDASEISOFORM C AT PH 5.5
1d7w CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE ISOFORM CCOMPLEXED WITH CYANIDE AND BROMIDE AT PH 4.0
1dnu STRUCTURAL ANALYSES OF HUMAN MYELOPEROXIDASE- THIOCYANATECOMPLEX
1dnw HUMAN MYELOPEROXIDASE-CYANIDE-THIOCYANATE COMPLEX
1mhl CRYSTAL STRUCTURE OF HUMAN MYELOPEROXIDASE ISOFORM C CRYSTALLIZED IN SPACE GROUP P2(1) AT PH 5.5 AND 20 DEG C
1myp MYELOPEROXIDASE
3zs0 HUMAN MYELOPEROXIDASE INACTIVATED BY TX2