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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF CANINE MYELOPEROXIDASE AT 3 ANGSTROMS RESOLUTION
 
Authors :  R. E. Fenna, J. Zeng
Date :  15 Apr 92  (Deposition) - 31 Jan 94  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Myeloperoxidase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Zeng, R. E. Fenna
X-Ray Crystal Structure Of Canine Myeloperoxidase At 3 A Resolution.
J. Mol. Biol. V. 226 185 1992
PubMed-ID: 1320128  |  Reference-DOI: 10.1016/0022-2836(92)90133-5

(-) Compounds

Molecule 1 - MYELOPEROXIDASE
    ChainsA, B
    EC Number1.11.1.7
    EngineeredYES
    Organism CommonDOG
    Organism ScientificCANIS LUPUS FAMILIARIS
    Organism Taxid9615
 
Molecule 2 - MYELOPEROXIDASE
    ChainsC, D
    EC Number1.11.1.7
    EngineeredYES
    Organism CommonDOG
    Organism ScientificCANIS LUPUS FAMILIARIS
    Organism Taxid9615

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric/Biological Unit (3, 16)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARENAG A:583 , ASN C:317BINDING SITE FOR RESIDUE NAG A 582
02AC2SOFTWARENAG A:582 , LEU B:33 , ARG D:438 , PHE D:439 , CYS D:440 , GLY D:441BINDING SITE FOR RESIDUE NAG A 583
03AC3SOFTWARENAG A:585 , ASN C:189 , ASN C:192 , VAL C:199BINDING SITE FOR RESIDUE NAG A 584
04AC4SOFTWARENAG A:584BINDING SITE FOR RESIDUE NAG A 585
05AC5SOFTWARENAG A:587 , ASN C:225 , ALA C:228 , TRP C:369 , LEU C:373BINDING SITE FOR RESIDUE NAG A 586
06AC6SOFTWARENAG A:586BINDING SITE FOR RESIDUE NAG A 587
07AC7SOFTWARENAG B:583 , ASN D:317BINDING SITE FOR RESIDUE NAG B 582
08AC8SOFTWARELEU A:33 , NAG B:582 , ARG C:438 , PHE C:439 , GLY C:441BINDING SITE FOR RESIDUE NAG B 583
09AC9SOFTWARENAG B:585 , ASN D:189 , ASN D:192 , VAL D:199 , GLN D:201BINDING SITE FOR RESIDUE NAG B 584
10BC1SOFTWARENAG B:584BINDING SITE FOR RESIDUE NAG B 585
11BC2SOFTWARENAG B:587 , ASN D:225 , TRP D:369BINDING SITE FOR RESIDUE NAG B 586
12BC3SOFTWARENAG B:586BINDING SITE FOR RESIDUE NAG B 587
13BC4SOFTWAREASP A:96 , THR C:168 , PHE C:170 , ASP C:172 , SER C:174BINDING SITE FOR RESIDUE CA A 581
14BC5SOFTWAREASP B:96 , THR D:168 , PHE D:170 , ASP D:172 , SER D:174BINDING SITE FOR RESIDUE CA B 581
15BC6SOFTWAREMET A:87 , GLN A:91 , ASP A:94 , ASP A:98 , PHE A:99 , THR A:100 , ARG C:239 , GLU C:242 , MET C:243 , THR C:329 , PHE C:332 , ARG C:333 , HIS C:336 , ILE C:339 , PHE C:365 , LEU C:406 , PHE C:407 , ARG C:424BINDING SITE FOR RESIDUE HEM A 580
16BC7SOFTWAREMET B:87 , GLN B:91 , ASP B:94 , ASP B:98 , PHE B:99 , THR B:100 , GLU D:242 , MET D:243 , THR D:329 , PHE D:332 , ARG D:333 , HIS D:336 , ILE D:339 , PHE D:365 , LEU D:406 , PHE D:407 , LEU D:417 , LEU D:420 , ARG D:424BINDING SITE FOR RESIDUE HEM B 580

(-) SS Bonds  (13, 13)

Asymmetric/Biological Unit
No.Residues
1A:1 -A:14
2B:1 -B:14
3C:115 -C:125
4C:119 -C:143
5C:153 -D:153
6C:221 -C:232
7C:440 -C:497
8C:538 -C:564
9D:115 -D:125
10D:119 -D:143
11D:221 -D:232
12D:440 -D:497
13D:538 -D:564

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MYP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (8, 16)

Asymmetric/Biological Unit (8, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_015377Y173CPERM_HUMANDisease (MPOD)78950939A/BY7C
2UniProtVAR_015378M251TPERM_HUMANDisease (MPOD)56378716A/BM85T
3UniProtVAR_036517R447QPERM_HUMANUnclassified762688992C/DR281Q
4CancerSNPVAR_PERM_HUMAN_CCDS11604_1_01 *R447QPERM_HUMANDisease (Colorectal cancer)  ---C/DR281Q
5UniProtVAR_015379R569WPERM_HUMANDisease (MPOD)119468010C/DR403W
6UniProtVAR_023996R604CPERM_HUMANPolymorphism35670089C/DR438C
7UniProtVAR_023997E683QPERM_HUMANPolymorphism35702888C/DE517Q
8UniProtVAR_012066I717VPERM_HUMANPolymorphism2759C/DI551V
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PEROXIDASE_1PS00435 Peroxidases proximal heme-ligand signature.PERM_HUMAN408-418
 
  2C:242-252
D:242-252

(-) Exons   (9, 20)

Asymmetric/Biological Unit (9, 20)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002252751ENSE00001151667chr17:56358296-56357966331PERM_HUMAN1-52520--
1.2ENST000002252752ENSE00000739393chr17:56357820-5635772794PERM_HUMAN52-83320--
1.3ENST000002252753ENSE00000739378chr17:56357375-56357200176PERM_HUMAN83-142600--
1.4aENST000002252754aENSE00000739375chr17:56357007-56356884124PERM_HUMAN142-183422A:1-17
B:1-17
-
-
17
17
-
-
1.4cENST000002252754cENSE00000739356chr17:56356787-56356658130PERM_HUMAN183-226442A:17-60
B:17-60
-
-
44
44
-
-
1.5ENST000002252755ENSE00000480273chr17:56356575-56356369207PERM_HUMAN227-295694A:61-104
B:61-104
C:114-129
D:114-129
44
44
16
16
1.6ENST000002252756ENSE00000480274chr17:56355506-56355188319PERM_HUMAN296-4021072-
-
C:130-236
D:130-236
-
-
107
107
1.7ENST000002252757ENSE00000739352chr17:56353063-56352903161PERM_HUMAN402-455542-
-
C:236-289
D:236-289
-
-
54
54
1.9ENST000002252759ENSE00000480276chr17:56351030-56350775256PERM_HUMAN456-541862-
-
C:290-375
D:290-375
-
-
86
86
1.10ENST0000022527510ENSE00001743415chr17:56350279-56350109171PERM_HUMAN541-598582-
-
C:375-432
D:375-432
-
-
58
58
1.11ENST0000022527511ENSE00000739347chr17:56349253-56349016238PERM_HUMAN598-677802-
-
C:432-511
D:432-511
-
-
80
80
1.12ENST0000022527512ENSE00001151664chr17:56348224-563472171008PERM_HUMAN677-745692-
-
C:511-575
D:511-575
-
-
65
65

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:104
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:104
                                   176       186       196       206       216       226       236       246       256       266    
           PERM_HUMAN   167 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 270
               SCOP domains d1myp.1 A:,C: Myeloperoxidase                                                                            SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................ee................................hhhhhhhhh........eeeeeehhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------C-----------------------------------------------------------------------------T------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4a        -------------------------------------------Exon 1.5  PDB: A:61-104 UniProt: 227-295     Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.4c  PDB: A:17-60 UniProt: 183-226    -------------------------------------------- Transcript 1 (2)
                 1myp A   1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 104
                                    10        20        30        40        50        60        70        80        90       100    

Chain B from PDB  Type:PROTEIN  Length:104
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:104
                                   176       186       196       206       216       226       236       246       256       266    
           PERM_HUMAN   167 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 270
               SCOP domains d1myp.2 B:,D: Myeloperoxidase                                                                            SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................hhhhhhhhh..............hhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------C-----------------------------------------------------------------------------T------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4a        -------------------------------------------Exon 1.5  PDB: B:61-104 UniProt: 227-295     Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.4c  PDB: B:17-60 UniProt: 183-226    -------------------------------------------- Transcript 1 (2)
                 1myp B   1 CPEQDKYRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFTPEPA 104
                                    10        20        30        40        50        60        70        80        90       100    

Chain C from PDB  Type:PROTEIN  Length:462
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:462
                                   289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739  
           PERM_HUMAN   280 NCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASW 741
               SCOP domains d1myp.1 A:,C: Myeloperoxidase                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1mypC00 C:114-575 Myeloperoxidase, subunit C                                                                                                                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................................................................hhhhhhh................................hhhhh...................hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh................hhhhhhhhhhhhh.............................hhhhhhh..hhhhhhhhh..............hhhhhh...........hhhhhhhhhhhh....hhhhhhh........hhhhhhhh..hhhhhhhhhh........hhhhhhh..........hhhhhhhhhhhhhhhhh............hhhhhhhh...hhhhhhhh................................... Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-------------------------------------------------------------------------------------------------------------------------W----------------------------------C------------------------------------------------------------------------------Q---------------------------------V------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------Q------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------PEROXIDASE_----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5        Exon 1.6  PDB: C:130-236 UniProt: 296-402                                                                  ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.10  PDB: C:375-432 UniProt: 541-598                ------------------------------------------------------------------------------Exon 1.12  PDB: C:511-575 UniProt: 677-745 [INCOMPLETE]           Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: C:236-289 UniProt: 402-455             Exon 1.9  PDB: C:290-375 UniProt: 456-541                                             --------------------------------------------------------Exon 1.11  PDB: C:432-511 UniProt: 598-677                                      ---------------------------------------------------------------- Transcript 1 (2)
                 1myp C 114 NCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASW 575
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573  

Chain D from PDB  Type:PROTEIN  Length:462
 aligned with PERM_HUMAN | P05164 from UniProtKB/Swiss-Prot  Length:745

    Alignment length:462
                                   289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739  
           PERM_HUMAN   280 NCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASW 741
               SCOP domains d1myp.2 B:,D: Myeloperoxidase                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1mypD00 D:114-575 Myeloperoxidase, subunit C                                                                                                                                                                                                                                                                                                                                                                                                                                   CATH domains
           Pfam domains (1) An_peroxidase-1mypD01 D:114-552                                                                                                                                                                                                                                                                                                                                                                                                                        ----------------------- Pfam domains (1)
           Pfam domains (2) An_peroxidase-1mypD02 D:114-552                                                                                                                                                                                                                                                                                                                                                                                                                        ----------------------- Pfam domains (2)
           Pfam domains (3) An_peroxidase-1mypD03 D:114-552                                                                                                                                                                                                                                                                                                                                                                                                                        ----------------------- Pfam domains (3)
           Pfam domains (4) An_peroxidase-1mypD04 D:114-552                                                                                                                                                                                                                                                                                                                                                                                                                        ----------------------- Pfam domains (4)
         Sec.struct. author ..............ee.............ee...................ee...............hhhhhhhee......ee......................hhhhh...................hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh................hhhhhhhhhhhhh...eee.............eee.......hhhhhhh..hhhhhhhhh..eee.........hhhhhh...........hhhhhhhhhhhh....hhhhhhh........hhhhhhhh..hhhhhhhhhh........hhhhhhh..........hhhhhhhhhhhhhhhhh............hhhhhhhh...hhhhhhhh................................... Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------Q-------------------------------------------------------------------------------------------------------------------------W----------------------------------C------------------------------------------------------------------------------Q---------------------------------V------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------Q------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------PEROXIDASE_----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5        Exon 1.6  PDB: D:130-236 UniProt: 296-402                                                                  ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.10  PDB: D:375-432 UniProt: 541-598                ------------------------------------------------------------------------------Exon 1.12  PDB: D:511-575 UniProt: 677-745 [INCOMPLETE]           Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: D:236-289 UniProt: 402-455             Exon 1.9  PDB: D:290-375 UniProt: 456-541                                             --------------------------------------------------------Exon 1.11  PDB: D:432-511 UniProt: 598-677                                      ---------------------------------------------------------------- Transcript 1 (2)
                 1myp D 114 NCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATPAKLNRQNQIAVDEIRERLFEQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNCSTLPALNLASW 575
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (PERM_HUMAN | P05164)
molecular function
    GO:0003682    chromatin binding    Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0042744    hydrogen peroxide catabolic process    The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
    GO:0002149    hypochlorous acid biosynthetic process    The chemical reactions and pathways resulting in the formation of hypochlorous acid.
    GO:0034374    low-density lipoprotein particle remodeling    The acquisition, loss or modification of a protein or lipid within a low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0044130    negative regulation of growth of symbiont in host    Any process in which the symbiont stops, prevents or reduces its increase in size or mass within the cells or tissues of the host organism. The host is defined as the larger of the organisms involved in the symbiotic interaction.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019430    removal of superoxide radicals    Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
    GO:0002679    respiratory burst involved in defense response    A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
    GO:0032094    response to food    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a food stimulus; food is anything which, when taken into the body, serves to nourish or build up the tissues or to supply body heat.
    GO:1990268    response to gold nanoparticle    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gold nanoparticle stimulus.
    GO:0032496    response to lipopolysaccharide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
    GO:0009612    response to mechanical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
    GO:0006979    response to oxidative stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
    GO:0001878    response to yeast    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a yeast species.
cellular component
    GO:0042582    azurophil granule    Primary lysosomal granule found in neutrophil granulocytes. Contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0030141    secretory granule    A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        PERM_HUMAN | P051641cxp 1d2v 1d5l 1d7w 1dnu 1dnw 1mhl 3f9p 3zs0 3zs1 4c1m 4dl1 4ejx 5fiw 5mfa

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