Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF 3-DEHYDROQUINATE SYNTHASE FROM ACTINIDIA CHINENSIS IN COMPLEX WITH NAD
 
Authors :  G. Mittelstaedt, L. Negron, L. R. Schofield, K. Marsh, E. J. Parker
Date :  22 Feb 13  (Deposition) - 21 Aug 13  (Release) - 25 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Shikimate Pathway, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Mittelstadt, L. Negron, L. R. Schofield, K. Marsh, E. J. Parker
Biochemical And Structural Characterisation Of Dehydroquinate Synthase From The New Zealand Kiwifruit Actinidia Chinensis.
Arch. Biochem. Biophys. V. 537 185 2013
PubMed-ID: 23916589  |  Reference-DOI: 10.1016/J.ABB.2013.07.022

(-) Compounds

Molecule 1 - 3-DEHYDROQUINATE SYNTHASE
    Chains: A, B, C, D
    EC Number: 4.2.3.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET200/ACHDHQS
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA2
    Expression System Vector: PET200
    Expression System Vector Type: PLASMID
    Organism Scientific: ACTINIDIA CHINENSIS
    Organism Taxid: 3625

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 31)

Asymmetric Unit (7, 31)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2GLY5Mod. Amino AcidGLYCINE
3NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
4PEG5Ligand/IonDI(HYDROXYETHYL)ETHER
5PG41Ligand/IonTETRAETHYLENE GLYCOL
6PGE1Ligand/IonTRIETHYLENE GLYCOL
7PO414Ligand/IonPHOSPHATE ION
Biological Unit 1 (6, 15)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2GLY2Mod. Amino AcidGLYCINE
3NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
5PG4-1Ligand/IonTETRAETHYLENE GLYCOL
6PGE1Ligand/IonTRIETHYLENE GLYCOL
7PO47Ligand/IonPHOSPHATE ION
Biological Unit 2 (5, 16)
No.NameCountTypeFull Name
12PE-1Ligand/IonNONAETHYLENE GLYCOL
2GLY3Mod. Amino AcidGLYCINE
3NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
4PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
5PG41Ligand/IonTETRAETHYLENE GLYCOL
6PGE-1Ligand/IonTRIETHYLENE GLYCOL
7PO47Ligand/IonPHOSPHATE ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:156 , ASN A:166 , ASN A:258 , HIS A:265 , LYS A:337 , PO4 A:1379 , GLY A:1384 , ARG B:134BINDING SITE FOR RESIDUE PO4 A1378
02AC2SOFTWAREASN A:166 , HIS A:261 , HIS A:265 , HIS A:278 , PO4 A:1378 , NAD A:1381 , GLY A:1384BINDING SITE FOR RESIDUE PO4 A1379
03AC3SOFTWAREASN A:258 , LEU A:259 , GLY A:260 , HIS A:261 , THR A:262 , PHE A:263 , ALA A:289 , LYS A:338 , LEU A:346 , ILE A:347BINDING SITE FOR RESIDUE PO4 A1380
04AC4SOFTWAREASN A:54 , THR A:56 , VAL A:57 , TYR A:61 , ASP A:85 , GLU A:87 , LYS A:90 , GLY A:118 , GLY A:119 , VAL A:120 , ASP A:123 , THR A:143 , THR A:144 , MET A:146 , ASP A:150 , SER A:151 , LYS A:156 , LYS A:165 , THR A:183 , THR A:186 , LEU A:187 , GLU A:191 , LYS A:240 , HIS A:278 , PO4 A:1379 , GLY A:1384 , HOH A:2006 , HOH A:2015 , HOH A:2027 , HOH A:2033BINDING SITE FOR RESIDUE NAD A1381
05AC5SOFTWAREASN A:71 , ALA A:334BINDING SITE FOR RESIDUE PEG A1382
06AC6SOFTWARELEU A:163 , MET A:328 , SER A:331 , ILE B:103BINDING SITE FOR RESIDUE PEG A1383
07AC7SOFTWAREARG A:134 , LYS B:156 , ASN B:166 , ASN B:258 , HIS B:265 , LYS B:337 , PO4 B:1379 , GLY B:1385BINDING SITE FOR RESIDUE PO4 B1378
08AC8SOFTWAREASN B:166 , HIS B:261 , HIS B:265 , HIS B:278 , PO4 B:1378 , NAD B:1382 , GLY B:1385BINDING SITE FOR RESIDUE PO4 B1379
09AC9SOFTWAREASN B:258 , GLY B:260 , HIS B:261 , THR B:262 , PHE B:263 , ALA B:289 , LYS B:338 , LEU B:346 , ILE B:347BINDING SITE FOR RESIDUE PO4 B1380
10BC1SOFTWARELYS B:97 , 2PE B:1383 , LYS D:97BINDING SITE FOR RESIDUE PO4 B1381
11BC2SOFTWAREASN B:54 , THR B:56 , VAL B:57 , TYR B:61 , ASP B:85 , GLU B:87 , LYS B:90 , GLY B:118 , GLY B:119 , VAL B:120 , ASP B:123 , THR B:143 , THR B:144 , MET B:146 , ASP B:150 , SER B:151 , LYS B:156 , LYS B:165 , ASN B:166 , THR B:183 , THR B:186 , LEU B:187 , GLU B:191 , LYS B:240 , HIS B:278 , PO4 B:1379 , GLY B:1385 , HOH B:2006 , HOH B:2016 , HOH B:2024BINDING SITE FOR RESIDUE NAD B1382
12BC3SOFTWAREPRO B:84 , ASP B:93 , LYS B:97 , PO4 B:1381 , HOH B:2038 , ILE D:82 , PRO D:84 , TYR D:89 , ASP D:93 , LYS D:97 , ASP D:100BINDING SITE FOR RESIDUE 2PE B1383
13BC4SOFTWAREARG A:106 , LYS B:330 , ALA B:334 , GLY B:342 , HOH B:2040BINDING SITE FOR RESIDUE PGE B1384
14BC5SOFTWARELYS B:156 , LYS B:240 , ARG B:254 , LEU B:257 , PO4 B:1378 , PO4 B:1379 , NAD B:1382 , HOH B:2021BINDING SITE FOR RESIDUE GLY B1385
15BC6SOFTWAREASN C:166 , HIS C:261 , HIS C:265 , HIS C:278 , PO4 C:1379 , NAD C:1381 , GLY C:1383BINDING SITE FOR RESIDUE PO4 C1378
16BC7SOFTWARELYS C:156 , ASN C:166 , ASN C:258 , HIS C:265 , LYS C:337 , PO4 C:1378 , ARG D:134BINDING SITE FOR RESIDUE PO4 C1379
17BC8SOFTWAREASN C:258 , LEU C:259 , GLY C:260 , HIS C:261 , THR C:262 , PHE C:263 , ALA C:289 , LYS C:338 , LEU C:346 , ILE C:347BINDING SITE FOR RESIDUE PO4 C1380
18BC9SOFTWAREASN C:54 , THR C:56 , VAL C:57 , TYR C:61 , ASP C:85 , GLU C:87 , LYS C:90 , GLY C:118 , GLY C:119 , VAL C:120 , ASP C:123 , THR C:143 , THR C:144 , MET C:146 , ASP C:150 , SER C:151 , LYS C:156 , LYS C:165 , ASN C:166 , THR C:183 , THR C:186 , LEU C:187 , GLU C:191 , LYS C:240 , HIS C:278 , PO4 C:1378 , GLY C:1383 , HOH C:2006 , HOH C:2008 , HOH C:2034 , HOH C:2045 , HOH C:2053BINDING SITE FOR RESIDUE NAD C1381
19CC1SOFTWARELYS C:330 , ALA C:334 , GLY C:342 , ARG D:48 , SER D:105BINDING SITE FOR RESIDUE PG4 C1382
20CC2SOFTWARELYS C:156 , LYS C:240 , ARG C:254 , PO4 C:1378 , NAD C:1381 , HOH C:2030BINDING SITE FOR RESIDUE GLY C1383
21CC3SOFTWAREASN D:166 , HIS D:261 , HIS D:265 , HIS D:278 , PO4 D:1379 , NAD D:1382BINDING SITE FOR RESIDUE PO4 D1378
22CC4SOFTWAREARG C:134 , LYS D:156 , ASN D:166 , ASN D:258 , HIS D:265 , LYS D:337 , PO4 D:1378BINDING SITE FOR RESIDUE PO4 D1379
23CC5SOFTWAREASN D:258 , GLY D:260 , HIS D:261 , THR D:262 , PHE D:263 , ALA D:289 , LYS D:338 , LEU D:346 , ILE D:347BINDING SITE FOR RESIDUE PO4 D1380
24CC6SOFTWARETYR D:231 , LYS D:234 , ARG D:235 , GLU D:238BINDING SITE FOR RESIDUE PO4 D1381
25CC7SOFTWAREASN D:54 , THR D:56 , VAL D:57 , TYR D:61 , ASP D:85 , GLU D:87 , LYS D:90 , GLY D:118 , GLY D:119 , VAL D:120 , ASP D:123 , THR D:143 , THR D:144 , MET D:146 , ASP D:150 , SER D:151 , LYS D:156 , LYS D:165 , THR D:183 , THR D:186 , LEU D:187 , GLU D:191 , LYS D:240 , HIS D:278 , PO4 D:1378 , HOH D:2008 , HOH D:2015 , HOH D:2028BINDING SITE FOR RESIDUE NAD D1382
26CC8SOFTWARELYS A:97 , THR D:269 , GLY D:270BINDING SITE FOR RESIDUE PEG D1383
27CC9SOFTWARELEU C:163 , SER C:331 , ILE D:103 , GLU D:104 , ARG D:106BINDING SITE FOR RESIDUE PEG D1384
28DC1SOFTWAREARG C:106 , HOH C:2012 , LYS D:330 , ALA D:334 , VAL D:339 , GLY D:342BINDING SITE FOR RESIDUE PEG D1385
29DC2SOFTWAREASN D:185 , THR D:186 , LEU D:187BINDING SITE FOR RESIDUE GLY D1386
30DC3SOFTWAREASP A:150 , LYS A:156 , LYS A:240 , ARG A:254 , PO4 A:1378 , PO4 A:1379 , NAD A:1381 , HOH A:2025 , HOH A:2028BINDING SITE FOR RESIDUE GLY A1384
31DC4SOFTWAREASN D:185 , THR D:186 , LEU D:187BINDING SITE FOR RESIDUE GLY D1386
32DC5SOFTWARELYS D:350 , ASP D:361BINDING SITE FOR RESIDUE GLY D1387

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZOK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ZOK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZOK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ZOK)

(-) Exons   (0, 0)

(no "Exon" information available for 3ZOK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:365
 aligned with DHQS_ACTCH | U3KRF2 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:365
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440     
           DHQS_ACTCH    81 PTIVDVDLGDRSYPIYIGSGLLDQPDLLQRHVHGKRVLVVTNSTVAPIYLDKVVGALTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 445
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhheeeeee.hhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh.....eeeeee..eeeeeeee.....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..........hhhhhhhhhh....ee..ee.eeee......eeee...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zok A  13 PTIVDVDLGDRSYPIYIGSGLLDQPDLLQRHVHGKRVLVVTNSTVAPIYLDKVVGALTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 377
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372     


Chain B from PDB  Type:PROTEIN  Length:365
 aligned with DHQS_ACTCH | U3KRF2 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:365
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440     
           DHQS_ACTCH    81 PTIVDVDLGDRSYPIYIGSGLLDQPDLLQRHVHGKRVLVVTNSTVAPIYLDKVVGALTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 445
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhheeeeee.hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh.....eeeeee..eeeeeeee.....eeee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..........hhhhhhhhhh....ee..ee.eeee......eeee...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zok B  13 PTIVDVDLGDRSYPIYIGSGLLDQPDLLQRHVHGKRVLVVTNSTVAPIYLDKVVGALTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 377
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372     


Chain C from PDB  Type:PROTEIN  Length:365
 aligned with DHQS_ACTCH | U3KRF2 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:365
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440     
           DHQS_ACTCH    81 PTIVDVDLGDRSYPIYIGSGLLDQPDLLQRHVHGKRVLVVTNSTVAPIYLDKVVGALTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 445
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhheeeeee.hhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh.....eeeeee..eeeeeeee.....eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..........hhhhhhhhhh....ee..ee.eeee......eeee...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zok C  13 PTIVDVDLGDRSYPIYIGSGLLDQPDLLQRHVHGKRVLVVTNSTVAPIYLDKVVGALTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 377
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372     


Chain D from PDB  Type:PROTEIN  Length:365
 aligned with DHQS_ACTCH | U3KRF2 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:365
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440     
           DHQS_ACTCH    81 PTIVDVDLGDRSYPIYIGSGLLDQPDLLQRHVHGKRVLVVTNSTVAPIYLDKVVGALTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 445
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhheeeeee.hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh.....eeeeee..eeeeeeee.....eeee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..........hhhhhhhhhh....ee..ee.eeee......eeee...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zok D  13 PTIVDVDLGDRSYPIYIGSGLLDQPDLLQRHVHGKRVLVVTNSTVAPIYLDKVVGALTNENPNVSVESVILPDGEKYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVVKYGLIRDANFFEWQEKNMPALMARDPSALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTVEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 377
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ZOK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZOK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZOK)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (DHQS_ACTCH | U3KRF2)
molecular function
    GO:0003856    3-dehydroquinate synthase activity    Catalysis of the reaction: 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0009423    chorismate biosynthetic process    The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
    GO:0033587    shikimate biosynthetic process    The chemical reactions and pathways resulting in the formation of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    2PE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GLY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PG4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PGE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3zok)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3zok
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DHQS_ACTCH | U3KRF2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.2.3.4
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  DHQS_ACTCH | U3KRF2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3ZOK)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3ZOK)