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Biol. Unit 2
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Asym.Unit (240 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (119 KB)
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(1)
Title
:
STRUCTURE OF 3-DEHYDROQUINATE SYNTHASE FROM ACTINIDIA CHINENSIS IN COMPLEX WITH NAD
Authors
:
G. Mittelstaedt, L. Negron, L. R. Schofield, K. Marsh, E. J. Parker
Date
:
22 Feb 13 (Deposition) - 21 Aug 13 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Shikimate Pathway, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Mittelstadt, L. Negron, L. R. Schofield, K. Marsh, E. J. Parker
Biochemical And Structural Characterisation Of Dehydroquinate Synthase From The New Zealand Kiwifruit Actinidia Chinensis.
Arch. Biochem. Biophys. V. 537 185 2013
[
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: NONAETHYLENE GLYCOL (2PEa)
2a: GLYCINE (GLYa)
2b: GLYCINE (GLYb)
2c: GLYCINE (GLYc)
2d: GLYCINE (GLYd)
2e: GLYCINE (GLYe)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
5a: TETRAETHYLENE GLYCOL (PG4a)
6a: TRIETHYLENE GLYCOL (PGEa)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
7c: PHOSPHATE ION (PO4c)
7d: PHOSPHATE ION (PO4d)
7e: PHOSPHATE ION (PO4e)
7f: PHOSPHATE ION (PO4f)
7g: PHOSPHATE ION (PO4g)
7h: PHOSPHATE ION (PO4h)
7i: PHOSPHATE ION (PO4i)
7j: PHOSPHATE ION (PO4j)
7k: PHOSPHATE ION (PO4k)
7l: PHOSPHATE ION (PO4l)
7m: PHOSPHATE ION (PO4m)
7n: PHOSPHATE ION (PO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
-1
Ligand/Ion
NONAETHYLENE GLYCOL
2
GLY
3
Mod. Amino Acid
GLYCINE
3
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
6
PGE
-1
Ligand/Ion
TRIETHYLENE GLYCOL
7
PO4
7
Ligand/Ion
PHOSPHATE ION
[
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Sites
(19, 19)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
LYS B:97 , 2PE B:1383 , LYS D:97
BINDING SITE FOR RESIDUE PO4 B1381
02
BC3
SOFTWARE
PRO B:84 , ASP B:93 , LYS B:97 , PO4 B:1381 , HOH B:2038 , ILE D:82 , PRO D:84 , TYR D:89 , ASP D:93 , LYS D:97 , ASP D:100
BINDING SITE FOR RESIDUE 2PE B1383
03
BC6
SOFTWARE
ASN C:166 , HIS C:261 , HIS C:265 , HIS C:278 , PO4 C:1379 , NAD C:1381 , GLY C:1383
BINDING SITE FOR RESIDUE PO4 C1378
04
BC7
SOFTWARE
LYS C:156 , ASN C:166 , ASN C:258 , HIS C:265 , LYS C:337 , PO4 C:1378 , ARG D:134
BINDING SITE FOR RESIDUE PO4 C1379
05
BC8
SOFTWARE
ASN C:258 , LEU C:259 , GLY C:260 , HIS C:261 , THR C:262 , PHE C:263 , ALA C:289 , LYS C:338 , LEU C:346 , ILE C:347
BINDING SITE FOR RESIDUE PO4 C1380
06
BC9
SOFTWARE
ASN C:54 , THR C:56 , VAL C:57 , TYR C:61 , ASP C:85 , GLU C:87 , LYS C:90 , GLY C:118 , GLY C:119 , VAL C:120 , ASP C:123 , THR C:143 , THR C:144 , MET C:146 , ASP C:150 , SER C:151 , LYS C:156 , LYS C:165 , ASN C:166 , THR C:183 , THR C:186 , LEU C:187 , GLU C:191 , LYS C:240 , HIS C:278 , PO4 C:1378 , GLY C:1383 , HOH C:2006 , HOH C:2008 , HOH C:2034 , HOH C:2045 , HOH C:2053
BINDING SITE FOR RESIDUE NAD C1381
07
CC1
SOFTWARE
LYS C:330 , ALA C:334 , GLY C:342 , ARG D:48 , SER D:105
BINDING SITE FOR RESIDUE PG4 C1382
08
CC2
SOFTWARE
LYS C:156 , LYS C:240 , ARG C:254 , PO4 C:1378 , NAD C:1381 , HOH C:2030
BINDING SITE FOR RESIDUE GLY C1383
09
CC3
SOFTWARE
ASN D:166 , HIS D:261 , HIS D:265 , HIS D:278 , PO4 D:1379 , NAD D:1382
BINDING SITE FOR RESIDUE PO4 D1378
10
CC4
SOFTWARE
ARG C:134 , LYS D:156 , ASN D:166 , ASN D:258 , HIS D:265 , LYS D:337 , PO4 D:1378
BINDING SITE FOR RESIDUE PO4 D1379
11
CC5
SOFTWARE
ASN D:258 , GLY D:260 , HIS D:261 , THR D:262 , PHE D:263 , ALA D:289 , LYS D:338 , LEU D:346 , ILE D:347
BINDING SITE FOR RESIDUE PO4 D1380
12
CC6
SOFTWARE
TYR D:231 , LYS D:234 , ARG D:235 , GLU D:238
BINDING SITE FOR RESIDUE PO4 D1381
13
CC7
SOFTWARE
ASN D:54 , THR D:56 , VAL D:57 , TYR D:61 , ASP D:85 , GLU D:87 , LYS D:90 , GLY D:118 , GLY D:119 , VAL D:120 , ASP D:123 , THR D:143 , THR D:144 , MET D:146 , ASP D:150 , SER D:151 , LYS D:156 , LYS D:165 , THR D:183 , THR D:186 , LEU D:187 , GLU D:191 , LYS D:240 , HIS D:278 , PO4 D:1378 , HOH D:2008 , HOH D:2015 , HOH D:2028
BINDING SITE FOR RESIDUE NAD D1382
14
CC8
SOFTWARE
LYS A:97 , THR D:269 , GLY D:270
BINDING SITE FOR RESIDUE PEG D1383
15
CC9
SOFTWARE
LEU C:163 , SER C:331 , ILE D:103 , GLU D:104 , ARG D:106
BINDING SITE FOR RESIDUE PEG D1384
16
DC1
SOFTWARE
ARG C:106 , HOH C:2012 , LYS D:330 , ALA D:334 , VAL D:339 , GLY D:342
BINDING SITE FOR RESIDUE PEG D1385
17
DC2
SOFTWARE
ASN D:185 , THR D:186 , LEU D:187
BINDING SITE FOR RESIDUE GLY D1386
18
DC4
SOFTWARE
ASN D:185 , THR D:186 , LEU D:187
BINDING SITE FOR RESIDUE GLY D1386
19
DC5
SOFTWARE
LYS D:350 , ASP D:361
BINDING SITE FOR RESIDUE GLY D1387
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (240 KB)
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