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Asym. Unit
Info
Asym.Unit (240 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (119 KB)
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(1)
Title
:
STRUCTURE OF 3-DEHYDROQUINATE SYNTHASE FROM ACTINIDIA CHINENSIS IN COMPLEX WITH NAD
Authors
:
G. Mittelstaedt, L. Negron, L. R. Schofield, K. Marsh, E. J. Parker
Date
:
22 Feb 13 (Deposition) - 21 Aug 13 (Release) - 25 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Shikimate Pathway, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Mittelstadt, L. Negron, L. R. Schofield, K. Marsh, E. J. Parker
Biochemical And Structural Characterisation Of Dehydroquinate Synthase From The New Zealand Kiwifruit Actinidia Chinensis.
Arch. Biochem. Biophys. V. 537 185 2013
[
close entry info
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Hetero Components
(7, 31)
Info
All Hetero Components
1a: NONAETHYLENE GLYCOL (2PEa)
2a: GLYCINE (GLYa)
2b: GLYCINE (GLYb)
2c: GLYCINE (GLYc)
2d: GLYCINE (GLYd)
2e: GLYCINE (GLYe)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
4e: DI(HYDROXYETHYL)ETHER (PEGe)
5a: TETRAETHYLENE GLYCOL (PG4a)
6a: TRIETHYLENE GLYCOL (PGEa)
7a: PHOSPHATE ION (PO4a)
7b: PHOSPHATE ION (PO4b)
7c: PHOSPHATE ION (PO4c)
7d: PHOSPHATE ION (PO4d)
7e: PHOSPHATE ION (PO4e)
7f: PHOSPHATE ION (PO4f)
7g: PHOSPHATE ION (PO4g)
7h: PHOSPHATE ION (PO4h)
7i: PHOSPHATE ION (PO4i)
7j: PHOSPHATE ION (PO4j)
7k: PHOSPHATE ION (PO4k)
7l: PHOSPHATE ION (PO4l)
7m: PHOSPHATE ION (PO4m)
7n: PHOSPHATE ION (PO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
1
Ligand/Ion
NONAETHYLENE GLYCOL
2
GLY
5
Mod. Amino Acid
GLYCINE
3
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
6
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
7
PO4
14
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:156 , ASN A:166 , ASN A:258 , HIS A:265 , LYS A:337 , PO4 A:1379 , GLY A:1384 , ARG B:134
BINDING SITE FOR RESIDUE PO4 A1378
02
AC2
SOFTWARE
ASN A:166 , HIS A:261 , HIS A:265 , HIS A:278 , PO4 A:1378 , NAD A:1381 , GLY A:1384
BINDING SITE FOR RESIDUE PO4 A1379
03
AC3
SOFTWARE
ASN A:258 , LEU A:259 , GLY A:260 , HIS A:261 , THR A:262 , PHE A:263 , ALA A:289 , LYS A:338 , LEU A:346 , ILE A:347
BINDING SITE FOR RESIDUE PO4 A1380
04
AC4
SOFTWARE
ASN A:54 , THR A:56 , VAL A:57 , TYR A:61 , ASP A:85 , GLU A:87 , LYS A:90 , GLY A:118 , GLY A:119 , VAL A:120 , ASP A:123 , THR A:143 , THR A:144 , MET A:146 , ASP A:150 , SER A:151 , LYS A:156 , LYS A:165 , THR A:183 , THR A:186 , LEU A:187 , GLU A:191 , LYS A:240 , HIS A:278 , PO4 A:1379 , GLY A:1384 , HOH A:2006 , HOH A:2015 , HOH A:2027 , HOH A:2033
BINDING SITE FOR RESIDUE NAD A1381
05
AC5
SOFTWARE
ASN A:71 , ALA A:334
BINDING SITE FOR RESIDUE PEG A1382
06
AC6
SOFTWARE
LEU A:163 , MET A:328 , SER A:331 , ILE B:103
BINDING SITE FOR RESIDUE PEG A1383
07
AC7
SOFTWARE
ARG A:134 , LYS B:156 , ASN B:166 , ASN B:258 , HIS B:265 , LYS B:337 , PO4 B:1379 , GLY B:1385
BINDING SITE FOR RESIDUE PO4 B1378
08
AC8
SOFTWARE
ASN B:166 , HIS B:261 , HIS B:265 , HIS B:278 , PO4 B:1378 , NAD B:1382 , GLY B:1385
BINDING SITE FOR RESIDUE PO4 B1379
09
AC9
SOFTWARE
ASN B:258 , GLY B:260 , HIS B:261 , THR B:262 , PHE B:263 , ALA B:289 , LYS B:338 , LEU B:346 , ILE B:347
BINDING SITE FOR RESIDUE PO4 B1380
10
BC1
SOFTWARE
LYS B:97 , 2PE B:1383 , LYS D:97
BINDING SITE FOR RESIDUE PO4 B1381
11
BC2
SOFTWARE
ASN B:54 , THR B:56 , VAL B:57 , TYR B:61 , ASP B:85 , GLU B:87 , LYS B:90 , GLY B:118 , GLY B:119 , VAL B:120 , ASP B:123 , THR B:143 , THR B:144 , MET B:146 , ASP B:150 , SER B:151 , LYS B:156 , LYS B:165 , ASN B:166 , THR B:183 , THR B:186 , LEU B:187 , GLU B:191 , LYS B:240 , HIS B:278 , PO4 B:1379 , GLY B:1385 , HOH B:2006 , HOH B:2016 , HOH B:2024
BINDING SITE FOR RESIDUE NAD B1382
12
BC3
SOFTWARE
PRO B:84 , ASP B:93 , LYS B:97 , PO4 B:1381 , HOH B:2038 , ILE D:82 , PRO D:84 , TYR D:89 , ASP D:93 , LYS D:97 , ASP D:100
BINDING SITE FOR RESIDUE 2PE B1383
13
BC4
SOFTWARE
ARG A:106 , LYS B:330 , ALA B:334 , GLY B:342 , HOH B:2040
BINDING SITE FOR RESIDUE PGE B1384
14
BC5
SOFTWARE
LYS B:156 , LYS B:240 , ARG B:254 , LEU B:257 , PO4 B:1378 , PO4 B:1379 , NAD B:1382 , HOH B:2021
BINDING SITE FOR RESIDUE GLY B1385
15
BC6
SOFTWARE
ASN C:166 , HIS C:261 , HIS C:265 , HIS C:278 , PO4 C:1379 , NAD C:1381 , GLY C:1383
BINDING SITE FOR RESIDUE PO4 C1378
16
BC7
SOFTWARE
LYS C:156 , ASN C:166 , ASN C:258 , HIS C:265 , LYS C:337 , PO4 C:1378 , ARG D:134
BINDING SITE FOR RESIDUE PO4 C1379
17
BC8
SOFTWARE
ASN C:258 , LEU C:259 , GLY C:260 , HIS C:261 , THR C:262 , PHE C:263 , ALA C:289 , LYS C:338 , LEU C:346 , ILE C:347
BINDING SITE FOR RESIDUE PO4 C1380
18
BC9
SOFTWARE
ASN C:54 , THR C:56 , VAL C:57 , TYR C:61 , ASP C:85 , GLU C:87 , LYS C:90 , GLY C:118 , GLY C:119 , VAL C:120 , ASP C:123 , THR C:143 , THR C:144 , MET C:146 , ASP C:150 , SER C:151 , LYS C:156 , LYS C:165 , ASN C:166 , THR C:183 , THR C:186 , LEU C:187 , GLU C:191 , LYS C:240 , HIS C:278 , PO4 C:1378 , GLY C:1383 , HOH C:2006 , HOH C:2008 , HOH C:2034 , HOH C:2045 , HOH C:2053
BINDING SITE FOR RESIDUE NAD C1381
19
CC1
SOFTWARE
LYS C:330 , ALA C:334 , GLY C:342 , ARG D:48 , SER D:105
BINDING SITE FOR RESIDUE PG4 C1382
20
CC2
SOFTWARE
LYS C:156 , LYS C:240 , ARG C:254 , PO4 C:1378 , NAD C:1381 , HOH C:2030
BINDING SITE FOR RESIDUE GLY C1383
21
CC3
SOFTWARE
ASN D:166 , HIS D:261 , HIS D:265 , HIS D:278 , PO4 D:1379 , NAD D:1382
BINDING SITE FOR RESIDUE PO4 D1378
22
CC4
SOFTWARE
ARG C:134 , LYS D:156 , ASN D:166 , ASN D:258 , HIS D:265 , LYS D:337 , PO4 D:1378
BINDING SITE FOR RESIDUE PO4 D1379
23
CC5
SOFTWARE
ASN D:258 , GLY D:260 , HIS D:261 , THR D:262 , PHE D:263 , ALA D:289 , LYS D:338 , LEU D:346 , ILE D:347
BINDING SITE FOR RESIDUE PO4 D1380
24
CC6
SOFTWARE
TYR D:231 , LYS D:234 , ARG D:235 , GLU D:238
BINDING SITE FOR RESIDUE PO4 D1381
25
CC7
SOFTWARE
ASN D:54 , THR D:56 , VAL D:57 , TYR D:61 , ASP D:85 , GLU D:87 , LYS D:90 , GLY D:118 , GLY D:119 , VAL D:120 , ASP D:123 , THR D:143 , THR D:144 , MET D:146 , ASP D:150 , SER D:151 , LYS D:156 , LYS D:165 , THR D:183 , THR D:186 , LEU D:187 , GLU D:191 , LYS D:240 , HIS D:278 , PO4 D:1378 , HOH D:2008 , HOH D:2015 , HOH D:2028
BINDING SITE FOR RESIDUE NAD D1382
26
CC8
SOFTWARE
LYS A:97 , THR D:269 , GLY D:270
BINDING SITE FOR RESIDUE PEG D1383
27
CC9
SOFTWARE
LEU C:163 , SER C:331 , ILE D:103 , GLU D:104 , ARG D:106
BINDING SITE FOR RESIDUE PEG D1384
28
DC1
SOFTWARE
ARG C:106 , HOH C:2012 , LYS D:330 , ALA D:334 , VAL D:339 , GLY D:342
BINDING SITE FOR RESIDUE PEG D1385
29
DC2
SOFTWARE
ASN D:185 , THR D:186 , LEU D:187
BINDING SITE FOR RESIDUE GLY D1386
30
DC3
SOFTWARE
ASP A:150 , LYS A:156 , LYS A:240 , ARG A:254 , PO4 A:1378 , PO4 A:1379 , NAD A:1381 , HOH A:2025 , HOH A:2028
BINDING SITE FOR RESIDUE GLY A1384
31
DC4
SOFTWARE
ASN D:185 , THR D:186 , LEU D:187
BINDING SITE FOR RESIDUE GLY D1386
32
DC5
SOFTWARE
LYS D:350 , ASP D:361
BINDING SITE FOR RESIDUE GLY D1387
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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