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(-) Description

Title :  LIGAND-FREE STRUCTURE OF CYP142 FROM MYCOBACTERIUM SMEGMATIS
 
Authors :  E. Garcia-Fernandez, D. J. Frank, B. Galan, P. M. Kells, L. M. Podust, J. P. R. Ortiz De Montellano
Date :  13 Nov 12  (Deposition) - 27 Feb 13  (Release) - 14 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  C,F  (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  A  (2x)
Biol. Unit 4:  D  (2x)
Keywords :  Oxidoreductase, Cyp142, Cholesterol Metabolism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Garcia-Fernandez, D. J. Frank, B. Galan, P. M. Kells, L. M. Podust, J. L. Garcia, P. R. Ortiz De Montellano
A Highly Conserved Mycobacterial Cholesterol Catabolic Pathway.
Environ. Microbiol. V. 15 2342 2013
PubMed-ID: 23489718  |  Reference-DOI: 10.1111/1462-2920.12108

(-) Compounds

Molecule 1 - P450 HEME-THIOLATE PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCW
    Expression System Strain: DH5[ALPHA]
    Expression System Taxid: 668369
    Expression System Vector Type: PLASMID
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 1772
    Other Details: 6XHIS TAG ENGINEERED AT C-TERMINUS
    Strain: MC2 155
    Synonym: CYP142A2

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x):   C  F
Biological Unit 2 (1x):  B  E 
Biological Unit 3 (2x): A     
Biological Unit 4 (2x):    D  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 35)

Asymmetric Unit (4, 35)
No.NameCountTypeFull Name
1BCD6Ligand/IonBETA-CYCLODEXTRIN
2EDO6Ligand/Ion1,2-ETHANEDIOL
3HEM6Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4SO417Ligand/IonSULFATE ION
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
1BCD2Ligand/IonBETA-CYCLODEXTRIN
2EDO2Ligand/Ion1,2-ETHANEDIOL
3HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4SO46Ligand/IonSULFATE ION
Biological Unit 2 (4, 12)
No.NameCountTypeFull Name
1BCD2Ligand/IonBETA-CYCLODEXTRIN
2EDO2Ligand/Ion1,2-ETHANEDIOL
3HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4SO46Ligand/IonSULFATE ION
Biological Unit 3 (4, 10)
No.NameCountTypeFull Name
1BCD2Ligand/IonBETA-CYCLODEXTRIN
2EDO2Ligand/Ion1,2-ETHANEDIOL
3HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4SO44Ligand/IonSULFATE ION
Biological Unit 4 (4, 12)
No.NameCountTypeFull Name
1BCD2Ligand/IonBETA-CYCLODEXTRIN
2EDO2Ligand/Ion1,2-ETHANEDIOL
3HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4SO46Ligand/IonSULFATE ION

(-) Sites  (35, 35)

Asymmetric Unit (35, 35)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:56 , MET A:78 , ILE A:79 , HIS A:86 , ARG A:90 , ILE A:230 , GLY A:233 , GLY A:234 , THR A:237 , THR A:238 , THR A:241 , VAL A:280 , MET A:283 , ARG A:285 , ALA A:335 , PHE A:336 , GLY A:337 , PHE A:338 , HIS A:341 , CYS A:343 , GLY A:345 , ALA A:349 , EDO A:1406 , HOH A:2348BINDING SITE FOR RESIDUE HEM A1402
02AC2SOFTWAREMET A:179 , LYS A:190 , ASP A:221 , PHE A:225 , HOH A:2446 , PRO F:76 , PHE F:182 , ASP F:221 , PHE F:225 , BCD F:1403 , HOH F:2415BINDING SITE FOR RESIDUE BCD A1403
03AC3SOFTWAREGLU B:56 , MET B:78 , ILE B:79 , HIS B:86 , ARG B:90 , PHE B:97 , GLY B:233 , GLY B:234 , THR B:237 , THR B:238 , THR B:241 , VAL B:280 , ARG B:285 , ALA B:335 , PHE B:336 , GLY B:337 , PHE B:338 , HIS B:341 , CYS B:343 , GLY B:345 , ALA B:349 , EDO B:1409 , HOH B:2342BINDING SITE FOR RESIDUE HEM B1402
04AC4SOFTWAREMET B:179 , PHE B:182 , LYS B:190 , ASP B:221 , PHE B:225 , HOH B:2144BINDING SITE FOR RESIDUE BCD B1403
05AC5SOFTWAREGLU C:56 , MET C:78 , ILE C:79 , HIS C:86 , ARG C:90 , PHE C:97 , ILE C:230 , GLY C:233 , GLY C:234 , THR C:237 , THR C:238 , LEU C:274 , VAL C:280 , ARG C:285 , ALA C:335 , PHE C:336 , GLY C:337 , PHE C:338 , HIS C:341 , CYS C:343 , GLY C:345 , ALA C:349 , EDO C:1407 , HOH C:2356BINDING SITE FOR RESIDUE HEM C1402
06AC6SOFTWAREMET C:179 , PHE C:182 , ASP C:221 , PHE C:225BINDING SITE FOR RESIDUE BCD C1403
07AC7SOFTWAREGLU D:56 , MET D:78 , ILE D:79 , HIS D:86 , ARG D:90 , ILE D:230 , GLY D:233 , GLY D:234 , THR D:237 , THR D:238 , VAL D:280 , ARG D:285 , ALA D:335 , PHE D:336 , GLY D:337 , PHE D:338 , HIS D:341 , CYS D:343 , GLY D:345 , ALA D:349 , EDO D:1407 , HOH D:2330BINDING SITE FOR RESIDUE HEM D1402
08AC8SOFTWAREMET D:179 , LYS D:190 , ASP D:221 , MET E:179 , PHE E:182 , ASP E:221 , PHE E:225 , BCD E:1403 , HOH E:2443BINDING SITE FOR RESIDUE BCD D1403
09AC9SOFTWAREGLU E:56 , MET E:78 , ILE E:79 , HIS E:86 , ARG E:90 , PHE E:97 , GLY E:233 , GLY E:234 , THR E:237 , THR E:238 , THR E:241 , VAL E:280 , ARG E:285 , ALA E:335 , PHE E:336 , GLY E:337 , PHE E:338 , HIS E:341 , CYS E:343 , GLY E:345 , ALA E:349 , EDO E:1407 , HOH E:2343BINDING SITE FOR RESIDUE HEM E1402
10BC1SOFTWAREPRO D:76 , ALA D:183 , ASP D:221 , PHE D:225 , BCD D:1403 , LYS E:190 , ASP E:221 , HOH E:2442 , HOH E:2443BINDING SITE FOR RESIDUE BCD E1403
11BC2SOFTWAREGLU F:56 , MET F:78 , ILE F:79 , HIS F:86 , ARG F:90 , ILE F:230 , GLY F:233 , GLY F:234 , THR F:237 , THR F:238 , THR F:241 , VAL F:280 , ARG F:285 , ALA F:335 , PHE F:336 , GLY F:337 , PHE F:338 , HIS F:341 , CYS F:343 , GLY F:345 , ALA F:349 , EDO F:1407 , HOH F:2323BINDING SITE FOR RESIDUE HEM F1402
12BC3SOFTWAREMET A:179 , PHE A:182 , ASP A:221 , PHE A:225 , BCD A:1403 , HOH A:2446 , ASP F:221 , HOH F:2415BINDING SITE FOR RESIDUE BCD F1403
13BC4SOFTWAREARG B:239 , ARG B:378BINDING SITE FOR RESIDUE SO4 B1406
14BC5SOFTWAREARG E:24 , ARG E:28 , HOH E:2049 , HOH E:2051 , HOH E:2061BINDING SITE FOR RESIDUE SO4 E1404
15BC6SOFTWAREARG B:28 , HOH B:2044 , HOH B:2053 , HOH B:2060BINDING SITE FOR RESIDUE SO4 B1407
16BC7SOFTWAREARG C:28 , HOH C:2055 , HOH C:2056 , HOH C:2063 , HOH C:2457BINDING SITE FOR RESIDUE SO4 C1404
17BC8SOFTWAREARG F:28 , HOH F:2039 , HOH F:2041 , HOH F:2049BINDING SITE FOR RESIDUE SO4 F1404
18BC9SOFTWAREARG C:239 , ARG C:378 , HOH C:2316BINDING SITE FOR RESIDUE SO4 C1405
19CC1SOFTWAREARG D:24 , ARG D:28 , HOH D:2048 , HOH D:2055 , HOH D:2059BINDING SITE FOR RESIDUE SO4 D1404
20CC2SOFTWAREGLU D:236 , ARG D:239 , ARG D:378 , HOH D:2242BINDING SITE FOR RESIDUE SO4 D1405
21CC3SOFTWAREARG E:239 , ARG E:378 , HOH E:2257BINDING SITE FOR RESIDUE SO4 E1405
22CC4SOFTWAREGLU F:236 , ARG F:239 , ARG F:378 , HOH F:2215BINDING SITE FOR RESIDUE SO4 F1405
23CC5SOFTWARETHR A:2 , GLN A:3 , MET A:4 , ARG A:7 , TRP A:29 , HOH A:2447BINDING SITE FOR RESIDUE SO4 A1404
24CC6SOFTWAREARG A:24 , ARG A:28 , HOH A:2051 , HOH A:2059 , HOH A:2448BINDING SITE FOR RESIDUE SO4 A1405
25CC7SOFTWAREGLN B:3 , MET B:4 , ARG B:7 , TRP B:29 , GLU B:34BINDING SITE FOR RESIDUE SO4 B1408
26CC8SOFTWARETHR C:2 , GLN C:3 , MET C:4 , ARG C:7 , TRP C:29 , HOH C:2009BINDING SITE FOR RESIDUE SO4 C1406
27CC9SOFTWAREGLN D:3 , MET D:4 , ARG D:7 , TRP D:29 , HOH D:2431BINDING SITE FOR RESIDUE SO4 D1406
28DC1SOFTWAREGLN E:3 , MET E:4 , ARG E:7 , TRP E:29 , HOH E:2444BINDING SITE FOR RESIDUE SO4 E1406
29DC2SOFTWARETHR F:2 , GLN F:3 , MET F:4 , ARG F:7 , TRP F:29 , HOH F:2416BINDING SITE FOR RESIDUE SO4 F1406
30DC3SOFTWAREGLY B:233 , HEM B:1402BINDING SITE FOR RESIDUE EDO B1409
31DC4SOFTWAREGLY F:233 , HEM F:1402BINDING SITE FOR RESIDUE EDO F1407
32DC5SOFTWAREGLY A:233 , HEM A:1402BINDING SITE FOR RESIDUE EDO A1406
33DC6SOFTWAREGLY C:233 , MET C:283 , HEM C:1402BINDING SITE FOR RESIDUE EDO C1407
34DC7SOFTWAREGLY D:233 , HEM D:1402BINDING SITE FOR RESIDUE EDO D1407
35DC8SOFTWAREGLY E:233 , HEM E:1402 , HOH E:2445BINDING SITE FOR RESIDUE EDO E1407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ZBY)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Asp A:83 -Pro A:84
2Asn A:329 -Pro A:330
3Asp B:83 -Pro B:84
4Asn B:329 -Pro B:330
5Asp C:83 -Pro C:84
6Asn C:329 -Pro C:330
7Asp D:83 -Pro D:84
8Asn D:329 -Pro D:330
9Asp E:83 -Pro E:84
10Asn E:329 -Pro E:330
11Asp F:83 -Pro F:84
12Asn F:329 -Pro F:330

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ZBY)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOCHROME_P450PS00086 Cytochrome P450 cysteine heme-iron ligand signature.CP142_MYCS2336-345
 
 
 
 
 		  6A:336-345
B:336-345
C:336-345
D:336-345
E:336-345
F:336-345
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOCHROME_P450PS00086 Cytochrome P450 cysteine heme-iron ligand signature.CP142_MYCS2336-345
 
 
 
 
 		  2-
-
C:336-345
-
-
F:336-345
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOCHROME_P450PS00086 Cytochrome P450 cysteine heme-iron ligand signature.CP142_MYCS2336-345
 
 
 
 
 		  2-
B:336-345
-
-
E:336-345
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOCHROME_P450PS00086 Cytochrome P450 cysteine heme-iron ligand signature.CP142_MYCS2336-345
 
 
 
 
 		  2A:336-345
-
-
-
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOCHROME_P450PS00086 Cytochrome P450 cysteine heme-iron ligand signature.CP142_MYCS2336-345
 
 
 
 
 		  2-
-
-
D:336-345
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 3ZBY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
 aligned with CP142_MYCS2 | A0R4Q6 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                         401  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
          CP142_MYCS2     2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLA--   -
               SCOP domains d3zbya_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhh..hhhhhhhhhhhhh.eee.....eee.hhhhhhhhhh....ee.............hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeeeee...eee..eee....eeeeehhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhh...ee....................eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME---------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zby A   2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLAHH 403
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  


Chain B from PDB  Type:PROTEIN  Length:404
 aligned with CP142_MYCS2 | A0R4Q6 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                         401    
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401    
          CP142_MYCS2     2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLA----   -
               SCOP domains d3zbyb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhh..hhhhhhhhhhhhh.eee.....eee.hhhhhhhhhhh...ee.............hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeee...eee..eee....eeeehhhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhh...ee....................eee.......hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3zby B   2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLAHHHH 405
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401    


Chain C from PDB  Type:PROTEIN  Length:402
 aligned with CP142_MYCS2 | A0R4Q6 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                         401  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
          CP142_MYCS2     2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLA--   -
               SCOP domains d3zbyc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhh..hhhhhhhhhhhhh.eee.....eee.hhhhhhhhhh....ee.............hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeeeee...eee..eee....eeeeehhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhh...ee....................eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME---------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zby C   2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLAHH 403
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  


Chain D from PDB  Type:PROTEIN  Length:402
 aligned with CP142_MYCS2 | A0R4Q6 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                         401  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
          CP142_MYCS2     2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLA--   -
               SCOP domains d3zbyd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhh..hhhhhhhhhhhhh.eee.....eee.hhhhhhhhhhh...ee.............hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeeeee...eee..eee....eeeeehhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhh...ee....................eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME---------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zby D   2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLAHH 403
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  


Chain E from PDB  Type:PROTEIN  Length:402
 aligned with CP142_MYCS2 | A0R4Q6 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                         401  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
          CP142_MYCS2     2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLA--   -
               SCOP domains d3zbye_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhh..hhhhhhhhhhhhh.eee.....eee.hhhhhhhhhh....ee.............hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeee...eee..eee....eeeehhhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhh...ee....................eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME---------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zby E   2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLAHH 403
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  


Chain F from PDB  Type:PROTEIN  Length:402
 aligned with CP142_MYCS2 | A0R4Q6 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                         401  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
          CP142_MYCS2     2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLA--   -
               SCOP domains d3zbyf_ F: automated matches                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhh..hhhhhhhhhhhhh.eee.....eee.hhhhhhhhhhh...ee.............hhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeee...eee..eee....eeeehhhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhhhhh...ee....................eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME---------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3zby F   2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLAHH 403
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ZBY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ZBY)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (CP142_MYCS2 | A0R4Q6)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  3zby
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CP142_MYCS2 | A0R4Q6: 2yoo 4tri 4uax

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3ZBY)