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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF CYP142A2 FROM MYCOBACTERIUM SMEGMATIS, COMPLEXED WITH CHOLESTEROL SULFATE.
 
Authors :  Y. Madrona, P. Ortiz De Montellano
Date :  17 Jun 14  (Deposition) - 17 Sep 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cytochrome P450, Cholesterol Sulfate, Ligand Bound, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Frank, Y. Madrona, P. R. Ortiz De Montellano
Cholesterol Ester Oxidation By Mycobacterial Cytochrome P450.
J. Biol. Chem. V. 289 30417 2014
PubMed-ID: 25210044  |  Reference-DOI: 10.1074/JBC.M114.602771

(-) Compounds

Molecule 1 - P450 HEME-THIOLATE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCWORI
    Expression System Taxid: 562
    Gene: MSMEG_5918
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 246196
    Strain: ATCC 700084 / MC(2)155

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1C3S2Ligand/IonCHOLEST-5-EN-3-YL HYDROGEN SULFATE
2GOL2Ligand/IonGLYCEROL
3HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1C3S1Ligand/IonCHOLEST-5-EN-3-YL HYDROGEN SULFATE
2GOL1Ligand/IonGLYCEROL
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1C3S1Ligand/IonCHOLEST-5-EN-3-YL HYDROGEN SULFATE
2GOL1Ligand/IonGLYCEROL
3HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:56 , ILE A:79 , HIS A:86 , ARG A:90 , PHE A:97 , ILE A:141 , GLY A:233 , GLY A:234 , THR A:237 , THR A:238 , VAL A:280 , ARG A:285 , ALA A:335 , PHE A:336 , GLY A:337 , PHE A:338 , HIS A:341 , CYS A:343 , LEU A:344 , GLY A:345 , LEU A:348 , C3S A:502 , HOH A:667binding site for residue HEM A 501
2AC2SOFTWARETYR A:77 , MET A:179 , LEU A:229 , HEM A:501 , HOH A:812binding site for residue C3S A 502
3AC3SOFTWAREGLU A:122 , LEU A:145 , GLY A:146 , ARG A:196 , ASP A:203 , HIS A:402 , HOH A:601 , HOH A:614binding site for residue GOL A 503
4AC4SOFTWARETYR B:77 , MET B:179 , LEU B:229 , PHE B:382 , HEM B:502 , HOH B:746 , HOH B:924binding site for residue C3S B 501
5AC5SOFTWAREGLU B:56 , ILE B:79 , HIS B:86 , ARG B:90 , PHE B:97 , ILE B:230 , GLY B:233 , THR B:237 , THR B:238 , THR B:241 , PRO B:279 , VAL B:280 , ARG B:285 , ALA B:335 , PHE B:336 , GLY B:337 , PHE B:338 , HIS B:341 , CYS B:343 , LEU B:344 , GLY B:345 , C3S B:501 , HOH B:669binding site for residue HEM B 502
6AC6SOFTWARELEU B:145 , GLY B:146 , GLU B:151 , VAL B:192 , ARG B:196 , ASP B:203binding site for residue GOL B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TRI)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asp A:83 -Pro A:84
2Asn A:329 -Pro A:330
3Asp B:83 -Pro B:84
4Asn B:329 -Pro B:330

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TRI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TRI)

(-) Exons   (0, 0)

(no "Exon" information available for 4TRI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..hhhhhhhhhhhhh.eee.....eee.hhhhhhhhhhh...ee.............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeehhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeee...eee..eee....eeeehhhhhhhhhhhhh..................hhhhh..hhhhhhhhhhhhhhhhhhhh...ee....................eee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tri A   5 LTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLAHHHH 405
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404 


Chain B from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......hhhhhh..hhhhhhhhhhhhh.eee.....eee.hhhhhhhhhh....ee.............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeee...eee..eee....eeeehhhhhh.hhhhhh.........................hhhhhhhhhhhhhhhhhhhh...ee....................eee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tri B   2 TQMLTRPDVDLVNGMFYADGGAREAYRWMRANEPVFRDRNGLAAATTYQAVLDAERNPELFSSTGGIRPDQPGMPYMIDMDDPQHLLRRKLVNAGFTRKRVMDKVDSIGRLCDTLIDAVCERGECDFVRDIAAPLPMAVIGDMLGVLPTERDMLLKWSDDLVCGLSSHVDEAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMSDDEIVFETLLILIGGDETTRHTLSGGTEQLLRHRDQWDALVADVDLLPGAIEEMLRWTSPVKNMCRTLTADTVFHGTELRAGEKIMLMFESANFDESVFGDPDNFRIDRNPNSHVAFGFGTHFCLGNQLARLELRLMTERVLRRLPDLRLADDAPVPLRPANFVSGPESMPVVFTPSAPVLA 401
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TRI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TRI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TRI)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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        CP142_MYCS2 | A0R4Q6: 2yoo 3zby 4uax

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