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3ZBY
Biol. Unit 1
Info
Asym.Unit (940 KB)
Biol.Unit 1 (313 KB)
Biol.Unit 2 (313 KB)
Biol.Unit 3 (311 KB)
Biol.Unit 4 (314 KB)
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(1)
Title
:
LIGAND-FREE STRUCTURE OF CYP142 FROM MYCOBACTERIUM SMEGMATIS
Authors
:
E. Garcia-Fernandez, D. J. Frank, B. Galan, P. M. Kells, L. M. Podust, J. P. R. Ortiz De Montellano
Date
:
13 Nov 12 (Deposition) - 27 Feb 13 (Release) - 14 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: C,F (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: A (2x)
Biol. Unit 4: D (2x)
Keywords
:
Oxidoreductase, Cyp142, Cholesterol Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Garcia-Fernandez, D. J. Frank, B. Galan, P. M. Kells, L. M. Podust, J. L. Garcia, P. R. Ortiz De Montellano
A Highly Conserved Mycobacterial Cholesterol Catabolic Pathway.
Environ. Microbiol. V. 15 2342 2013
[
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: BETA-CYCLODEXTRIN (BCDa)
1b: BETA-CYCLODEXTRIN (BCDb)
1c: BETA-CYCLODEXTRIN (BCDc)
1d: BETA-CYCLODEXTRIN (BCDd)
1e: BETA-CYCLODEXTRIN (BCDe)
1f: BETA-CYCLODEXTRIN (BCDf)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCD
2
Ligand/Ion
BETA-CYCLODEXTRIN
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC8 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC4 (SOFTWARE)
13: DC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
MET A:179 , LYS A:190 , ASP A:221 , PHE A:225 , HOH A:2446 , PRO F:76 , PHE F:182 , ASP F:221 , PHE F:225 , BCD F:1403 , HOH F:2415
BINDING SITE FOR RESIDUE BCD A1403
02
AC5
SOFTWARE
GLU C:56 , MET C:78 , ILE C:79 , HIS C:86 , ARG C:90 , PHE C:97 , ILE C:230 , GLY C:233 , GLY C:234 , THR C:237 , THR C:238 , LEU C:274 , VAL C:280 , ARG C:285 , ALA C:335 , PHE C:336 , GLY C:337 , PHE C:338 , HIS C:341 , CYS C:343 , GLY C:345 , ALA C:349 , EDO C:1407 , HOH C:2356
BINDING SITE FOR RESIDUE HEM C1402
03
AC6
SOFTWARE
MET C:179 , PHE C:182 , ASP C:221 , PHE C:225
BINDING SITE FOR RESIDUE BCD C1403
04
BC2
SOFTWARE
GLU F:56 , MET F:78 , ILE F:79 , HIS F:86 , ARG F:90 , ILE F:230 , GLY F:233 , GLY F:234 , THR F:237 , THR F:238 , THR F:241 , VAL F:280 , ARG F:285 , ALA F:335 , PHE F:336 , GLY F:337 , PHE F:338 , HIS F:341 , CYS F:343 , GLY F:345 , ALA F:349 , EDO F:1407 , HOH F:2323
BINDING SITE FOR RESIDUE HEM F1402
05
BC3
SOFTWARE
MET A:179 , PHE A:182 , ASP A:221 , PHE A:225 , BCD A:1403 , HOH A:2446 , ASP F:221 , HOH F:2415
BINDING SITE FOR RESIDUE BCD F1403
06
BC7
SOFTWARE
ARG C:28 , HOH C:2055 , HOH C:2056 , HOH C:2063 , HOH C:2457
BINDING SITE FOR RESIDUE SO4 C1404
07
BC8
SOFTWARE
ARG F:28 , HOH F:2039 , HOH F:2041 , HOH F:2049
BINDING SITE FOR RESIDUE SO4 F1404
08
BC9
SOFTWARE
ARG C:239 , ARG C:378 , HOH C:2316
BINDING SITE FOR RESIDUE SO4 C1405
09
CC4
SOFTWARE
GLU F:236 , ARG F:239 , ARG F:378 , HOH F:2215
BINDING SITE FOR RESIDUE SO4 F1405
10
CC8
SOFTWARE
THR C:2 , GLN C:3 , MET C:4 , ARG C:7 , TRP C:29 , HOH C:2009
BINDING SITE FOR RESIDUE SO4 C1406
11
DC2
SOFTWARE
THR F:2 , GLN F:3 , MET F:4 , ARG F:7 , TRP F:29 , HOH F:2416
BINDING SITE FOR RESIDUE SO4 F1406
12
DC4
SOFTWARE
GLY F:233 , HEM F:1402
BINDING SITE FOR RESIDUE EDO F1407
13
DC6
SOFTWARE
GLY C:233 , MET C:283 , HEM C:1402
BINDING SITE FOR RESIDUE EDO C1407
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (C:336-345,F:336-345)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP142_MYCS2
336-345
2
-
-
C:336-345
-
-
F:336-345
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3zbya_ (A:)
1b: SCOP_d3zbyb_ (B:)
1c: SCOP_d3zbyc_ (C:)
1d: SCOP_d3zbyd_ (D:)
1e: SCOP_d3zbye_ (E:)
1f: SCOP_d3zbyf_ (F:)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Mycobacterium smegmatis [TaxId: 246196]
(2)
1a
d3zbya_
A:
1b
d3zbyb_
B:
1c
d3zbyc_
C:
1d
d3zbyd_
D:
1e
d3zbye_
E:
1f
d3zbyf_
F:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain F
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (940 KB)
Header - Asym.Unit
Biol.Unit 1 (313 KB)
Header - Biol.Unit 1
Biol.Unit 2 (313 KB)
Header - Biol.Unit 2
Biol.Unit 3 (311 KB)
Header - Biol.Unit 3
Biol.Unit 4 (314 KB)
Header - Biol.Unit 4
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