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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOSPHOAPANTETHEINE ADENYLYLTRANSFERASE PPAT/COAD WITH AMP-PNP FROM PSEUDOMONAS AERUGONOSA
 
Authors :  R. Chatterjee, S. Datta
Date :  20 Nov 14  (Deposition) - 25 Nov 15  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D,E  (1x)
Biol. Unit 2:  B,C,F  (1x)
Keywords :  Rossmann Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Chatterjee, A. Mondal, A. Basu, S. Datta
Transition Of Phosphopantetheine Adenylyltransferase From Catalytic To Allosteric State Is Characterized By Ternary Complex Formation In Pseudomonas Aeruginosa
Biochim. Biophys. Acta V. 1864 773 2016
PubMed-ID: 27041211  |  Reference-DOI: 10.1016/J.BBAPAP.2016.03.018

(-) Compounds

Molecule 1 - PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE
    Chains: A, B, C, D, E, F
    EC Number: 2.7.7.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: COAD, PA0363, PA2G_04277
    Organism Scientific: PSEUDOMONAS AERUGINOSA 2192
    Organism Taxid: 350703
    Strain: 2192
    Synonym: DEPHOSPHO-COA PYROPHOSPHORYLASE, PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  DE 
Biological Unit 2 (1x):  BC  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 32)

Asymmetric Unit (5, 32)
No.NameCountTypeFull Name
1ANP6Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2DMS16Ligand/IonDIMETHYL SULFOXIDE
3FMT6Ligand/IonFORMIC ACID
4GOL2Ligand/IonGLYCEROL
5PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 15)
No.NameCountTypeFull Name
1ANP3Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2DMS9Ligand/IonDIMETHYL SULFOXIDE
3FMT2Ligand/IonFORMIC ACID
4GOL-1Ligand/IonGLYCEROL
5PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (5, 17)
No.NameCountTypeFull Name
1ANP3Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2DMS7Ligand/IonDIMETHYL SULFOXIDE
3FMT4Ligand/IonFORMIC ACID
4GOL2Ligand/IonGLYCEROL
5PO41Ligand/IonPHOSPHATE ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:6 , GLY A:8 , THR A:9 , PHE A:10 , GLY A:16 , HIS A:17 , LEU A:20 , LYS A:41 , ARG A:87 , GLY A:88 , ARG A:90 , ASP A:94 , GLU A:98 , PRO A:119 , TYR A:123 , ILE A:126 , SER A:127 , SER A:128 , THR A:129 , HOH A:1105 , HOH A:1107BINDING SITE FOR RESIDUE ANP A 1001
02AC2SOFTWAREARG A:26 , LEU A:27 , ASN C:83 , ASP C:111BINDING SITE FOR RESIDUE DMS A 1002
03AC3SOFTWAREARG A:156 , LYS A:158BINDING SITE FOR RESIDUE FMT A 1003
04AC4SOFTWAREPRO A:110 , VAL A:112 , GLU A:113 , ARG C:23 , ARG C:26BINDING SITE FOR RESIDUE PO4 A 1004
05AC5SOFTWAREASN A:83 , ASP A:111 , ARG C:26 , LEU C:27BINDING SITE FOR RESIDUE DMS A 1005
06AC6SOFTWARETYR B:6 , THR B:9 , PHE B:10 , GLY B:16 , HIS B:17 , LEU B:20 , LYS B:41 , ARG B:87 , GLY B:88 , ARG B:90 , ASP B:94 , GLU B:98 , PRO B:119 , TYR B:123 , ILE B:126 , SER B:127 , SER B:128 , THR B:129 , HOH B:1102 , HOH B:1103BINDING SITE FOR RESIDUE ANP B 1001
07AC7SOFTWAREALA B:36 , ALA B:37 , SER B:38 , PRO B:39 , PHE B:69 , THR B:71 , HOH B:1122BINDING SITE FOR RESIDUE DMS B 1002
08AC8SOFTWAREGLY B:8 , ALA B:36BINDING SITE FOR RESIDUE DMS B 1003
09AC9SOFTWAREASN B:83 , ASP B:111 , LEU D:27BINDING SITE FOR RESIDUE DMS B 1004
10BC1SOFTWAREARG B:156BINDING SITE FOR RESIDUE FMT B 1005
11BC2SOFTWAREARG B:156BINDING SITE FOR RESIDUE FMT B 1006
12BC3SOFTWARETHR B:58 , LYS B:59 , LEU B:61 , VAL B:64BINDING SITE FOR RESIDUE FMT B 1007
13BC4SOFTWARESER B:70 , THR B:71BINDING SITE FOR RESIDUE FMT B 1008
14BC5SOFTWARETYR C:6 , THR C:9 , PHE C:10 , GLY C:16 , HIS C:17 , LEU C:20 , LYS C:41 , ARG C:87 , GLY C:88 , ARG C:90 , ASP C:94 , GLU C:98 , PRO C:119 , TYR C:123 , ILE C:126 , SER C:127 , SER C:128 , THR C:129 , HOH C:1102 , HOH C:1110BINDING SITE FOR RESIDUE ANP C 1001
15BC6SOFTWARELYS C:15 , GLY C:18 , ASP C:19 , GLU C:22 , TYR C:123BINDING SITE FOR RESIDUE DMS C 1002
16BC7SOFTWARELEU C:130BINDING SITE FOR RESIDUE PO4 C 1003
17BC8SOFTWAREPRO C:7 , GLY C:8 , ALA C:36 , ARG C:87BINDING SITE FOR RESIDUE GOL C 1004
18BC9SOFTWAREASP C:29BINDING SITE FOR RESIDUE GOL C 1005
19CC1SOFTWARETYR D:6 , THR D:9 , PHE D:10 , GLY D:16 , HIS D:17 , LEU D:20 , LYS D:41 , ARG D:87 , GLY D:88 , ARG D:90 , ASP D:94 , GLU D:98 , PRO D:119 , TYR D:123 , ILE D:126 , SER D:127 , SER D:128 , THR D:129 , HOH D:1108 , HOH D:1110BINDING SITE FOR RESIDUE ANP D 1001
20CC2SOFTWAREGLY D:8 , ALA D:36BINDING SITE FOR RESIDUE DMS D 1002
21CC3SOFTWARELYS D:15 , GLY D:18 , ASP D:19 , GLU D:22 , TYR D:123BINDING SITE FOR RESIDUE DMS D 1003
22CC4SOFTWARESER D:93BINDING SITE FOR RESIDUE FMT D 1004
23CC5SOFTWARETYR E:6 , GLY E:8 , THR E:9 , PHE E:10 , GLY E:16 , HIS E:17 , LEU E:20 , ARG E:87 , GLY E:88 , ARG E:90 , GLU E:98 , PRO E:119 , TYR E:123 , ILE E:126 , SER E:127 , SER E:128 , THR E:129 , HOH E:1112BINDING SITE FOR RESIDUE ANP E 1001
24CC6SOFTWAREGLU A:133 , LEU E:73 , LEU E:101BINDING SITE FOR RESIDUE DMS E 1002
25CC7SOFTWAREARG E:26 , LEU E:27 , ASN F:83 , ASP F:111BINDING SITE FOR RESIDUE DMS E 1003
26CC8SOFTWARELYS E:15 , GLY E:18 , ASP E:19 , GLU E:22 , TYR E:123BINDING SITE FOR RESIDUE DMS E 1004
27CC9SOFTWAREPHE E:69 , SER E:70 , THR E:71BINDING SITE FOR RESIDUE DMS E 1005
28DC1SOFTWAREARG E:87BINDING SITE FOR RESIDUE DMS E 1006
29DC2SOFTWARETYR F:6 , GLY F:8 , THR F:9 , PHE F:10 , GLY F:16 , HIS F:17 , LEU F:20 , ARG F:87 , GLY F:88 , ARG F:90 , GLU F:98 , PRO F:119 , TYR F:123 , ILE F:126 , SER F:127 , SER F:128 , THR F:129BINDING SITE FOR RESIDUE ANP F 1001
30DC3SOFTWARELEU F:130 , ILE F:134BINDING SITE FOR RESIDUE DMS F 1002
31DC4SOFTWARELEU F:72 , LEU F:101BINDING SITE FOR RESIDUE DMS F 1003
32DC5SOFTWARELYS F:15 , GLY F:18 , ASP F:19 , TYR F:123 , HIS F:146BINDING SITE FOR RESIDUE DMS F 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3X1K)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asp A:11 -Pro A:12
2Asp B:11 -Pro B:12
3Asp C:11 -Pro C:12
4Asp D:11 -Pro D:12
5Asp E:11 -Pro E:12
6Asp F:11 -Pro F:12

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X1K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X1K)

(-) Exons   (0, 0)

(no "Exon" information available for 3X1K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhh...eeeeeee.hhhhh...hhhhhhhhhhhhhh....eeeeee..hhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1k A   2 NRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       


Chain B from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhh...eeeeeee.hhhhh...hhhhhhhhhhhhhh....eeeeee..hhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1k B   2 NRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       


Chain C from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhh...eeeeeee.hhhhh...hhhhhhhhhhhh......eeeeee..hhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhh.........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1k C   2 NRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       


Chain D from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh...eeeeeee.hhhhh...hhhhhhhhhhhh......eeeeee..hhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhh.........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1k D   1 MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain E from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhh...eeeeeee.hhhhh...hhhhhhhhhhhh......eeeeee..hhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1k E   2 NRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       


Chain F from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.hhhhh...hhhhhhhhhhhh......eeeeee..hhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1k F   1 MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X1K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X1K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X1K)

(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        A0A0X1KGP2_P | A0A0X1KGP2: 3x1j 3x1m 4ruk

(-) Related Entries Specified in the PDB File

3x1j 3x1m 4ruk