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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE (PPAT/COAD) WITH ACCOA FROM PSEUDOMONAS AERUGINOSA
 
Authors :  R. Chatterjee, S. Datta
Date :  19 Nov 14  (Deposition) - 25 Nov 15  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.33
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Rossmann Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Chatterjee, A. Mondal, A. Basu, S. Datta
Transition Of Phosphopantetheine Adenylyltransferase From Catalytic To Allosteric State Is Characterized By Ternary Complex Formation In Pseudomonas Aeruginosa
Biochim. Biophys. Acta V. 1864 773 2016
PubMed-ID: 27041211  |  Reference-DOI: 10.1016/J.BBAPAP.2016.03.018

(-) Compounds

Molecule 1 - PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE
    Chains: A, B, C
    EC Number: 2.7.7.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: COAD, PA0363, PA2G_04277
    Organism Scientific: PSEUDOMONAS AERUGINOSA 2192
    Organism Taxid: 350703
    Strain: 2192
    Synonym: DEPHOSPHO-COA PYROPHOSPHORYLASE, PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 16)

Asymmetric/Biological Unit (5, 16)
No.NameCountTypeFull Name
1ACO3Ligand/IonACETYL COENZYME *A
2DMS8Ligand/IonDIMETHYL SULFOXIDE
3GOL2Ligand/IonGLYCEROL
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5PO42Ligand/IonPHOSPHATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:6 , PRO A:7 , GLY A:8 , THR A:9 , HIS A:17 , ALA A:36 , LYS A:41 , LEU A:72 , LEU A:73 , ARG A:87 , GLY A:88 , ARG A:90 , TYR A:97 , LEU A:101 , ASN A:105 , SER A:127 , SER A:128 , THR A:129 , DMS A:207 , HOH A:303 , LEU C:130 , ILE C:134 , LEU C:137BINDING SITE FOR RESIDUE ACO A 201
02AC2SOFTWAREGLY A:68 , PHE A:69 , SER A:70 , THR A:71 , PHE A:76 , GOL A:204 , HOH A:319BINDING SITE FOR RESIDUE PO4 A 202
03AC3SOFTWAREASN A:83 , ASP A:111 , ARG C:26 , LEU C:27BINDING SITE FOR RESIDUE PO4 A 203
04AC4SOFTWARELEU A:47 , GLY A:68 , PHE A:69 , SER A:70 , PO4 A:202 , GOL A:205BINDING SITE FOR RESIDUE GOL A 204
05AC5SOFTWAREGOL A:204 , HIS C:75BINDING SITE FOR RESIDUE GOL A 205
06AC6SOFTWAREGLU A:48 , GLN A:49 , LEU C:47 , GLY C:68 , PHE C:69BINDING SITE FOR RESIDUE DMS A 206
07AC7SOFTWAREALA A:37 , SER A:38 , PRO A:39 , PHE A:69 , SER A:70 , THR A:71 , ACO A:201BINDING SITE FOR RESIDUE DMS A 207
08AC8SOFTWARELYS A:15 , GLY A:18 , ASP A:19 , TYR A:123BINDING SITE FOR RESIDUE DMS A 208
09AC9SOFTWAREGLU A:155 , ARG A:156 , LYS A:158 , GLN C:55 , GLU C:65 , VAL C:66 , HOH C:308BINDING SITE FOR RESIDUE PEG A 209
10BC1SOFTWAREGLU A:133 , LEU A:137 , TYR B:6 , PRO B:7 , GLY B:8 , THR B:9 , HIS B:17 , ALA B:36 , LYS B:41 , PHE B:69 , THR B:71 , LEU B:72 , LEU B:73 , ARG B:87 , GLY B:88 , ARG B:90 , TYR B:97 , ASN B:105 , SER B:127 , SER B:128 , THR B:129BINDING SITE FOR RESIDUE ACO B 201
11BC2SOFTWARELYS B:15 , GLY B:18 , ASP B:19 , GLU B:22 , TYR B:123BINDING SITE FOR RESIDUE DMS B 202
12BC3SOFTWAREARG B:26 , LEU B:27 , ASN B:83 , ASP B:111 , HOH B:305BINDING SITE FOR RESIDUE DMS B 203
13BC4SOFTWAREGLY B:68 , SER B:70 , THR B:71 , GLU B:79BINDING SITE FOR RESIDUE DMS B 204
14BC5SOFTWARELEU B:130 , GLU B:133 , ILE B:134 , TYR C:6 , PRO C:7 , GLY C:8 , THR C:9 , HIS C:17 , LYS C:41 , PHE C:69 , THR C:71 , LEU C:73 , ARG C:87 , ARG C:90 , TYR C:97 , LEU C:101 , ASN C:105 , SER C:127 , SER C:128 , THR C:129BINDING SITE FOR RESIDUE ACO C 201
15BC6SOFTWARELYS C:15 , GLY C:18 , ASP C:19 , GLU C:22BINDING SITE FOR RESIDUE DMS C 202
16BC7SOFTWAREPRO A:39 , GLU C:133BINDING SITE FOR RESIDUE DMS C 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3X1J)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Asp A:11 -Pro A:12
2Val A:92 -Ser A:93
3Asp B:11 -Pro B:12
4Asp C:11 -Pro C:12
5Ala C:91 -Val C:92
6Ser C:93 -Asp C:94
7Asp C:94 -Phe C:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3X1J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3X1J)

(-) Exons   (0, 0)

(no "Exon" information available for 3X1J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh...eeeeeee.hhhhh...hhhhhhhhhhhhhh....eeeeee..hhhhhhhhh...eeeee......hhhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1j A   1 MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain B from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhh...eeeeeee.hhhhh...hhhhhhhhhhhhhh....eeeeee..hhhhhhhhhh..eeeee.......hhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1j B   1 MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain C from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.hhhhh...hhhhhhhhhhhhh.....eeeeee..hhhhhhhhh...eeeee.......hhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3x1j C   1 MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFK 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3X1J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3X1J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3X1J)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3X1J)

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 Related Entries

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        A0A0X1KGP2_P | A0A0X1KGP2: 3x1k 3x1m 4ruk

(-) Related Entries Specified in the PDB File

3x1k 3x1m 4ruk