3WCW - JenaLib

Title :   THE STRUCTURE OF A DEOXYGENATED 400 KDA HEMOGLOBIN PROVIDES A MORE ACCURATE DESCRIPTION OF THE COOPERATIVE MECHANISM OF GIANT HEMOGLOBINS: MG BOUND FORM

Authors :   N. Numoto, T. Nakagawa, R. Ohara, T. Hasegawa, A. Kita, T. Yoshida, T. Ma K. Imai, Y. Fukumori, K. Miki

Date :   01 Jun 13 (Deposition) - 04 Jun 14 (Release) - 06 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H  (3x)

Keywords :   Globin Fold, Oxygen Transport, Oxygen Binding, Blood (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Numoto, T. Nakagawa, R. Ohara, T. Hasegawa, A. Kita, T. Yoshida, T. Maruyama, K. Imai, Y. Fukumori, K. Miki
The Structure Of A Deoxygenated 400 Kda Haemoglobin Reveals Ternary- And Quaternary-Structural Changes Of Giant Haemoglobins
Acta Crystallogr. , Sect. D V. 70 1823 2014
PubMed-ID: 25004960 | Reference-DOI: 10.1107/S1399004714008475

Compounds

Molecule 1 - A1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN
	Chains	:	A, E
	Organism Common	:	HYDROTHERMAL VENT TUBEWORM
	Organism Scientific	:	LAMELLIBRACHIA SATSUMA
	Organism Taxid	:	104711
	Tissue	:	BLOOD

Molecule 2 - A2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN
	Chains	:	B, F
	Organism Common	:	HYDROTHERMAL VENT TUBEWORM
	Organism Scientific	:	LAMELLIBRACHIA SATSUMA
	Organism Taxid	:	104711
	Tissue	:	BLOOD

Molecule 3 - B2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN
	Chains	:	C, G
	Organism Common	:	HYDROTHERMAL VENT TUBEWORM
	Organism Scientific	:	LAMELLIBRACHIA SATSUMA
	Organism Taxid	:	104711
	Tissue	:	BLOOD

Molecule 4 - B1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN
	Chains	:	D, H
	Organism Common	:	HYDROTHERMAL VENT TUBEWORM
	Organism Scientific	:	LAMELLIBRACHIA SATSUMA
	Organism Taxid	:	104711
	Tissue	:	BLOOD

Structural Features

Chains, Units

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (3x)	:	A	B	C	D	E	F	G	H

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (6, 31)

Asymmetric Unit (6, 31)

No.	Name	Count	Type	Full Name
1	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
2	HEM	8	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	MAN	6	Ligand/Ion	ALPHA-D-MANNOSE
4	MG	3	Ligand/Ion	MAGNESIUM ION
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	OXY	8	Ligand/Ion	OXYGEN MOLECULE

Biological Unit 1 (5, 84)

No.	Name	Count	Type	Full Name
1	FUC	6	Ligand/Ion	ALPHA-L-FUCOSE
2	HEM	24	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	MAN	18	Ligand/Ion	ALPHA-D-MANNOSE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NAG	12	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	OXY	24	Ligand/Ion	OXYGEN MOLECULE

Sites (21, 21)

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:45 , PHE A:46 , SER A:48 , VAL A:49 , ARG A:65 , GLN A:93 , HIS A:94 , ARG A:97 , LEU A:99 , ASN A:103 , PHE A:104 , PHE A:107 , ILE A:135 , ILE A:139 , ASP A:143 , OXY A:202 , HOH A:310 , HIS D:94 , GLN D:98	BINDING SITE FOR RESIDUE HEM A 201
02	AC2	SOFTWARE	TRP A:32 , PHE A:46 , HIS A:62 , VAL A:66 , HEM A:201	BINDING SITE FOR RESIDUE OXY A 202
03	AC3	SOFTWARE	HOH A:328 , HOH A:341	BINDING SITE FOR RESIDUE MG A 203
04	AC4	SOFTWARE	MET B:46 , PHE B:47 , ARG B:49 , ARG B:66 , GLN B:94 , HIS B:95 , ARG B:98 , VAL B:100 , TYR B:105 , VAL B:108 , OXY B:202 , HOH B:321 , HIS C:94 , GLN C:98	BINDING SITE FOR RESIDUE HEM B 201
05	AC5	SOFTWARE	TRP B:33 , PHE B:47 , HIS B:63 , VAL B:67 , HEM B:201	BINDING SITE FOR RESIDUE OXY B 202
06	AC6	SOFTWARE	ASN B:106 , GLU B:109 , ASP B:135	BINDING SITE FOR RESIDUE MG B 203
07	AC7	SOFTWARE	HIS B:90 , GLN B:94 , LEU C:50 , PHE C:51 , ARG C:53 , VAL C:54 , ARG C:70 , VAL C:71 , LEU C:75 , GLN C:98 , HIS C:99 , ARG C:102 , GLY C:109 , PHE C:110 , MET C:144 , OXY C:201 , HOH C:302	BINDING SITE FOR RESIDUE HEM C 200
08	AC8	SOFTWARE	PHE C:37 , PHE C:51 , HIS C:67 , VAL C:71 , HEM C:200	BINDING SITE FOR RESIDUE OXY C 201
09	AC9	SOFTWARE	HIS A:89 , GLN A:93 , SER D:47 , LEU D:50 , PHE D:51 , ASN D:53 , VAL D:54 , HIS D:67 , ARG D:70 , VAL D:71 , GLN D:98 , HIS D:99 , ARG D:102 , LEU D:105 , TYR D:109 , PHE D:110 , OXY D:202 , HOH D:306 , HOH D:321	BINDING SITE FOR RESIDUE HEM D 201
10	BC1	SOFTWARE	PHE D:37 , PHE D:51 , HIS D:67 , VAL D:71 , HEM D:201	BINDING SITE FOR RESIDUE OXY D 202
11	BC2	SOFTWARE	LEU E:45 , PHE E:46 , SER E:48 , VAL E:49 , ARG E:65 , GLN E:93 , HIS E:94 , ARG E:97 , LEU E:99 , ASN E:103 , PHE E:104 , PHE E:107 , ILE E:139 , OXY E:201 , HOH E:330 , HIS H:94 , GLN H:98	BINDING SITE FOR RESIDUE HEM E 200
12	BC3	SOFTWARE	TRP E:32 , PHE E:46 , HIS E:62 , VAL E:66 , HEM E:200	BINDING SITE FOR RESIDUE OXY E 201
13	BC4	SOFTWARE	MET F:46 , PHE F:47 , ARG F:49 , HIS F:63 , ARG F:66 , VAL F:67 , GLN F:94 , HIS F:95 , ARG F:98 , VAL F:100 , TYR F:105 , VAL F:108 , OXY F:202 , HIS G:94 , GLN G:98	BINDING SITE FOR RESIDUE HEM F 201
14	BC5	SOFTWARE	TRP F:33 , PHE F:47 , HIS F:63 , VAL F:67 , HEM F:201	BINDING SITE FOR RESIDUE OXY F 202
15	BC6	SOFTWARE	ASN F:106 , GLU F:109 , ASP F:135	BINDING SITE FOR RESIDUE MG F 203
16	BC7	SOFTWARE	HIS F:90 , GLN F:94 , LEU G:50 , PHE G:51 , ARG G:53 , HIS G:67 , ARG G:70 , VAL G:71 , LEU G:75 , GLN G:98 , HIS G:99 , ARG G:102 , VAL G:105 , GLY G:109 , PHE G:110 , ILE G:113 , MET G:144 , OXY G:201	BINDING SITE FOR RESIDUE HEM G 200
17	BC8	SOFTWARE	PHE G:51 , HIS G:67 , VAL G:71 , HEM G:200	BINDING SITE FOR RESIDUE OXY G 201
18	BC9	SOFTWARE	HIS E:89 , GLN E:93 , LEU H:50 , PHE H:51 , ASN H:53 , VAL H:54 , HIS H:67 , ARG H:70 , GLN H:98 , HIS H:99 , ARG H:102 , TYR H:109 , PHE H:110 , OXY H:202	BINDING SITE FOR RESIDUE HEM H 201
19	CC1	SOFTWARE	PHE H:37 , PHE H:51 , HIS H:67 , VAL H:71 , HEM H:201	BINDING SITE FOR RESIDUE OXY H 202
20	CC2	SOFTWARE	ASP A:81 , GLU D:48 , ASN D:58 , SER D:61 , HOH D:320	BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 58 RESIDUES 203 TO 208
21	CC3	SOFTWARE	ASP E:81 , ASN H:58 , SER H:61	BINDING SITE FOR CHAIN H OF SUGAR BOUND TO ASN H 58 RESIDUES 203 TO 208

SS Bonds (10, 10)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:146
 aligned with S0BBU7_LAMSA | S0BBU7 from UniProtKB/TrEMBL  Length:165

    Alignment length:146
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159      
         S0BBU7_LAMSA    20 DCNILQRLKVKMQWAKAYGFGTERAKFGNSLWTSIFNYAPDARDLFKSVKSEDMRSPQFKAHIARVIGGLDRVISMFDNEDALNADLEHLKSQHDPRGLDALNFVVFGKALFATVGGQFGVCFDLPAWESCYKVIAMGITGNDMFS 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wcw A   1 DCNILQRLKVKMQWAKAYGFGTERAKFGNSLWTSIFNYAPDARDLFKSVKSEDMRSPQFKAHIARVIGGLDRVISMFDNEDALNADLEHLKSQHDPRGLDALNFVVFGKALFATVGGQFGVCFDLPAWESCYKVIAMGITGNDMFS 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:144
 aligned with S0BBR6_LAMSA | S0BBR6 from UniProtKB/TrEMBL  Length:160

    Alignment length:144
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156    
         S0BBR6_LAMSA    17 SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRVRGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGVSAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN 160
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wcw B   1 SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRVRGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGVSAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain C from PDB  Type:PROTEIN  Length:150
 aligned with S0BCU7_LAMSA | S0BCU7 from UniProtKB/TrEMBL  Length:166

    Alignment length:150
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166
         S0BCU7_LAMSA    17 SSNSCTTEDRREMQLMWANVWSAQFTGRRLAIAQAVFKDLFAHVPDAVGLFDRVHGTEIDSSEFKAHCIRVVNGLDSAIGLLSDPSTLNEQLSHLATQHQERAGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITNGMTEGLAE 166
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wcw C   1 SSNSCTTEDRREMQLMWANVWSAQFTGRRLAIAQAVFKDLFAHVPDAVGLFDRVHGTEIDSSEFKAHCIRVVNGLDSAIGLLSDPSTLNEQLSHLATQHQERAGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITNGMTEGLAE 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain D from PDB  Type:PROTEIN  Length:147
 aligned with S0BAP9_LAMSA | S0BAP9 from UniProtKB/TrEMBL  Length:168

    Alignment length:147
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       
         S0BAP9_LAMSA    22 FCSEADATIVIKQWNQIYNAGIGAKSRWTMGNEIFSSLFKLKPESEVLFNNVNVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPSLIDNFNPDAWRNCLLPLKNAIAKGLP 168
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wcw D   3 FCSEADATIVIKQWNQIYNAGIGAKSRWTMGNEIFSSLFKLKPESEVLFNNVNVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPSLIDNFNPDAWRNCLLPLKNAIAKGLP 149
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142

Chain E from PDB  Type:PROTEIN  Length:146
 aligned with S0BBU7_LAMSA | S0BBU7 from UniProtKB/TrEMBL  Length:165

    Alignment length:146
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159      
         S0BBU7_LAMSA    20 DCNILQRLKVKMQWAKAYGFGTERAKFGNSLWTSIFNYAPDARDLFKSVKSEDMRSPQFKAHIARVIGGLDRVISMFDNEDALNADLEHLKSQHDPRGLDALNFVVFGKALFATVGGQFGVCFDLPAWESCYKVIAMGITGNDMFS 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wcw E   1 DCNILQRLKVKMQWAKAYGFGTERAKFGNSLWTSIFNYAPDARDLFKSVKSEDMRSPQFKAHIARVIGGLDRVISMFDNEDALNADLEHLKSQHDPRGLDALNFVVFGKALFATVGGQFGVCFDLPAWESCYKVIAMGITGNDMFS 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain F from PDB  Type:PROTEIN  Length:144
 aligned with S0BBR6_LAMSA | S0BBR6 from UniProtKB/TrEMBL  Length:160

    Alignment length:144
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156    
         S0BBR6_LAMSA    17 SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRVRGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGVSAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN 160
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wcw F   1 SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRVRGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGVSAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain G from PDB  Type:PROTEIN  Length:150
 aligned with S0BCU7_LAMSA | S0BCU7 from UniProtKB/TrEMBL  Length:166

    Alignment length:150
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166
         S0BCU7_LAMSA    17 SSNSCTTEDRREMQLMWANVWSAQFTGRRLAIAQAVFKDLFAHVPDAVGLFDRVHGTEIDSSEFKAHCIRVVNGLDSAIGLLSDPSTLNEQLSHLATQHQERAGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITNGMTEGLAE 166
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.hhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wcw G   1 SSNSCTTEDRREMQLMWANVWSAQFTGRRLAIAQAVFKDLFAHVPDAVGLFDRVHGTEIDSSEFKAHCIRVVNGLDSAIGLLSDPSTLNEQLSHLATQHQERAGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITNGMTEGLAE 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain H from PDB  Type:PROTEIN  Length:147
 aligned with S0BAP9_LAMSA | S0BAP9 from UniProtKB/TrEMBL  Length:168

    Alignment length:147
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       
         S0BAP9_LAMSA    22 FCSEADATIVIKQWNQIYNAGIGAKSRWTMGNEIFSSLFKLKPESEVLFNNVNVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPSLIDNFNPDAWRNCLLPLKNAIAKGLP 168
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wcw H   3 FCSEADATIVIKQWNQIYNAGIGAKSRWTMGNEIFSSLFKLKPESEVLFNNVNVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPSLIDNFNPDAWRNCLLPLKNAIAKGLP 149
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 36)

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	3wcw
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
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	S0BAP9_LAMSA \| S0BAP9
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		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	S0BBR6_LAMSA \| S0BBR6
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		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	S0BCU7_LAMSA \| S0BCU7
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Analysis Tools

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	S0BAP9_LAMSA \| S0BAP9
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	S0BBR6_LAMSA \| S0BBR6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	S0BBU7_LAMSA \| S0BBU7
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	S0BCU7_LAMSA \| S0BCU7
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description