3WCT - JenaLib

Title :   THE STRUCTURE OF A DEOXYGENATED 400 KDA HEMOGLOBIN PROVIDES A MORE ACCURATE DESCRIPTION OF THE COOPERATIVE MECHANISM OF GIANT HEMOGLOBINS: OXYGENATED FORM

Authors :   N. Numoto, T. Nakagawa, R. Ohara, T. Hasegawa, A. Kita, T. Yoshida, T. Ma K. Imai, Y. Fukumori, K. Miki

Date :   01 Jun 13 (Deposition) - 04 Jun 14 (Release) - 06 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H  (3x)

Keywords :   Globin Fold, Oxygen Transport, Oxygen Binding, Blood (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Numoto, T. Nakagawa, R. Ohara, T. Hasegawa, A. Kita, T. Yoshida, T. Maruyama, K. Imai, Y. Fukumori, K. Miki
The Structure Of A Deoxygenated 400 Kda Haemoglobin Reveals Ternary- And Quaternary-Structural Changes Of Giant Haemoglobins
Acta Crystallogr. , Sect. D V. 70 1823 2014
PubMed-ID: 25004960 | Reference-DOI: 10.1107/S1399004714008475

Compounds

Molecule 1 - A1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN
	Chains	:	A, E
	Organism Common	:	HYDROTHERMAL VENT TUBEWORM
	Organism Scientific	:	LAMELLIBRACHIA SATSUMA
	Organism Taxid	:	104711
	Tissue	:	BLOOD

Molecule 2 - A2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN
	Chains	:	B, F
	Organism Common	:	HYDROTHERMAL VENT TUBEWORM
	Organism Scientific	:	LAMELLIBRACHIA SATSUMA
	Organism Taxid	:	104711
	Tissue	:	BLOOD

Molecule 3 - B2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN
	Chains	:	C, G
	Organism Common	:	HYDROTHERMAL VENT TUBEWORM
	Organism Scientific	:	LAMELLIBRACHIA SATSUMA
	Organism Taxid	:	104711
	Tissue	:	BLOOD

Molecule 4 - B1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN
	Chains	:	D, H
	Organism Common	:	HYDROTHERMAL VENT TUBEWORM
	Organism Scientific	:	LAMELLIBRACHIA SATSUMA
	Organism Taxid	:	104711
	Tissue	:	BLOOD

Structural Features

Chains, Units

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (3x)	:	A	B	C	D	E	F	G	H

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (6, 30)

Asymmetric Unit (6, 30)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
3	HEM	8	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
4	MAN	6	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	OXY	8	Ligand/Ion	OXYGEN MOLECULE

Biological Unit 1 (5, 84)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	FUC	6	Ligand/Ion	ALPHA-L-FUCOSE
3	HEM	24	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
4	MAN	18	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	12	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	OXY	24	Ligand/Ion	OXYGEN MOLECULE

Sites (20, 20)

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LEU A:45 , PHE A:46 , SER A:48 , VAL A:49 , HIS A:62 , ARG A:65 , GLN A:93 , HIS A:94 , ARG A:97 , LEU A:99 , ASN A:103 , PHE A:104 , PHE A:107 , ILE A:139 , OXY A:201 , HOH A:306 , HIS D:94 , GLN D:98	BINDING SITE FOR RESIDUE HEM A 200
02	AC2	SOFTWARE	TRP A:32 , PHE A:46 , HIS A:62 , VAL A:66 , HEM A:200	BINDING SITE FOR RESIDUE OXY A 201
03	AC3	SOFTWARE	MET B:46 , PHE B:47 , ARG B:49 , VAL B:50 , HIS B:63 , ARG B:66 , GLN B:94 , HIS B:95 , ARG B:98 , VAL B:100 , GLN B:104 , TYR B:105 , VAL B:108 , OXY B:202 , HOH B:302 , HOH B:317 , HIS C:94 , GLN C:98	BINDING SITE FOR RESIDUE HEM B 201
04	AC4	SOFTWARE	TRP B:33 , PHE B:47 , HIS B:63 , VAL B:67 , HEM B:201	BINDING SITE FOR RESIDUE OXY B 202
05	AC5	SOFTWARE	ASN B:106 , GLU B:109 , ASP B:135 , HOH B:316 , HOH B:320	BINDING SITE FOR RESIDUE CA B 203
06	AC6	SOFTWARE	HIS B:90 , GLN B:94 , LEU C:50 , PHE C:51 , ARG C:53 , VAL C:54 , HIS C:67 , ARG C:70 , VAL C:71 , LEU C:75 , GLN C:98 , HIS C:99 , GLY C:109 , PHE C:110 , ILE C:113 , MET C:144 , OXY C:201 , HOH C:310	BINDING SITE FOR RESIDUE HEM C 200
07	AC7	SOFTWARE	PHE C:37 , PHE C:51 , HIS C:67 , VAL C:71 , HEM C:200	BINDING SITE FOR RESIDUE OXY C 201
08	AC8	SOFTWARE	HIS A:89 , GLN A:93 , LEU D:50 , PHE D:51 , ASN D:53 , VAL D:54 , HIS D:67 , ARG D:70 , VAL D:71 , GLN D:98 , HIS D:99 , ARG D:102 , TYR D:109 , PHE D:110 , MET D:113 , OXY D:202	BINDING SITE FOR RESIDUE HEM D 201
09	AC9	SOFTWARE	PHE D:37 , PHE D:51 , HIS D:67 , VAL D:71 , HEM D:201	BINDING SITE FOR RESIDUE OXY D 202
10	BC1	SOFTWARE	LEU E:45 , PHE E:46 , SER E:48 , VAL E:49 , ARG E:65 , GLN E:93 , HIS E:94 , ARG E:97 , PHE E:104 , PHE E:107 , TYR E:132 , ILE E:139 , OXY E:201 , HIS H:94 , GLN H:98	BINDING SITE FOR RESIDUE HEM E 200
11	BC2	SOFTWARE	TRP E:32 , PHE E:46 , HIS E:62 , VAL E:66 , HEM E:200	BINDING SITE FOR RESIDUE OXY E 201
12	BC3	SOFTWARE	MET F:46 , PHE F:47 , ARG F:49 , HIS F:63 , ARG F:66 , HIS F:95 , ARG F:98 , VAL F:100 , GLN F:104 , TYR F:105 , VAL F:108 , ILE F:141 , OXY F:202 , HOH F:310 , HIS G:94 , GLN G:98	BINDING SITE FOR RESIDUE HEM F 201
13	BC4	SOFTWARE	TRP F:33 , PHE F:47 , HIS F:63 , VAL F:67 , HEM F:201	BINDING SITE FOR RESIDUE OXY F 202
14	BC5	SOFTWARE	ASN F:106 , GLU F:109 , ASP F:135 , HOH F:313 , HOH F:327 , HOH F:328	BINDING SITE FOR RESIDUE CA F 203
15	BC6	SOFTWARE	HIS F:90 , GLN F:94 , LEU G:50 , PHE G:51 , ARG G:53 , HIS G:67 , ARG G:70 , VAL G:71 , LEU G:75 , GLN G:98 , HIS G:99 , ARG G:102 , GLY G:109 , PHE G:110 , MET G:144 , OXY G:201 , HOH G:328	BINDING SITE FOR RESIDUE HEM G 200
16	BC7	SOFTWARE	PHE G:37 , PHE G:51 , HIS G:67 , VAL G:71 , HEM G:200	BINDING SITE FOR RESIDUE OXY G 201
17	BC8	SOFTWARE	HIS E:89 , GLN E:93 , LEU H:50 , PHE H:51 , ASN H:53 , VAL H:54 , HIS H:67 , ARG H:70 , GLN H:98 , HIS H:99 , ARG H:102 , TYR H:109 , PHE H:110 , OXY H:202 , HOH H:309	BINDING SITE FOR RESIDUE HEM H 201
18	BC9	SOFTWARE	PHE H:37 , PHE H:51 , HIS H:67 , VAL H:71 , HEM H:201	BINDING SITE FOR RESIDUE OXY H 202
19	CC1	SOFTWARE	ASP A:81 , SER B:82 , ASN D:58	BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 58 RESIDUES 203 TO 208
20	CC2	SOFTWARE	ASN H:58 , SER H:60 , SER H:61 , LYS H:106	BINDING SITE FOR CHAIN H OF SUGAR BOUND TO ASN H 58 RESIDUES 203 TO 208

SS Bonds (10, 10)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:146
 aligned with S0BBU7_LAMSA | S0BBU7 from UniProtKB/TrEMBL  Length:165

    Alignment length:146
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159      
         S0BBU7_LAMSA    20 DCNILQRLKVKMQWAKAYGFGTERAKFGNSLWTSIFNYAPDARDLFKSVKSEDMRSPQFKAHIARVIGGLDRVISMFDNEDALNADLEHLKSQHDPRGLDALNFVVFGKALFATVGGQFGVCFDLPAWESCYKVIAMGITGNDMFS 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wct A   1 DCNILQRLKVKMQWAKAYGFGTERAKFGNSLWTSIFNYAPDARDLFKSVKSEDMRSPQFKAHIARVIGGLDRVISMFDNEDALNADLEHLKSQHDPRGLDALNFVVFGKALFATVGGQFGVCFDLPAWESCYKVIAMGITGNDMFS 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:144
 aligned with S0BBR6_LAMSA | S0BBR6 from UniProtKB/TrEMBL  Length:160

    Alignment length:144
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156    
         S0BBR6_LAMSA    17 SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRVRGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGVSAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN 160
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wct B   1 SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRVRGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGVSAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain C from PDB  Type:PROTEIN  Length:150
 aligned with S0BCU7_LAMSA | S0BCU7 from UniProtKB/TrEMBL  Length:166

    Alignment length:150
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166
         S0BCU7_LAMSA    17 SSNSCTTEDRREMQLMWANVWSAQFTGRRLAIAQAVFKDLFAHVPDAVGLFDRVHGTEIDSSEFKAHCIRVVNGLDSAIGLLSDPSTLNEQLSHLATQHQERAGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITNGMTEGLAE 166
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wct C   1 SSNSCTTEDRREMQLMWANVWSAQFTGRRLAIAQAVFKDLFAHVPDAVGLFDRVHGTEIDSSEFKAHCIRVVNGLDSAIGLLSDPSTLNEQLSHLATQHQERAGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITNGMTEGLAE 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain D from PDB  Type:PROTEIN  Length:147
 aligned with S0BAP9_LAMSA | S0BAP9 from UniProtKB/TrEMBL  Length:168

    Alignment length:147
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       
         S0BAP9_LAMSA    22 FCSEADATIVIKQWNQIYNAGIGAKSRWTMGNEIFSSLFKLKPESEVLFNNVNVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPSLIDNFNPDAWRNCLLPLKNAIAKGLP 168
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wct D   3 FCSEADATIVIKQWNQIYNAGIGAKSRWTMGNEIFSSLFKLKPESEVLFNNVNVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPSLIDNFNPDAWRNCLLPLKNAIAKGLP 149
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142

Chain E from PDB  Type:PROTEIN  Length:146
 aligned with S0BBU7_LAMSA | S0BBU7 from UniProtKB/TrEMBL  Length:165

    Alignment length:146
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159      
         S0BBU7_LAMSA    20 DCNILQRLKVKMQWAKAYGFGTERAKFGNSLWTSIFNYAPDARDLFKSVKSEDMRSPQFKAHIARVIGGLDRVISMFDNEDALNADLEHLKSQHDPRGLDALNFVVFGKALFATVGGQFGVCFDLPAWESCYKVIAMGITGNDMFS 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wct E   1 DCNILQRLKVKMQWAKAYGFGTERAKFGNSLWTSIFNYAPDARDLFKSVKSEDMRSPQFKAHIARVIGGLDRVISMFDNEDALNADLEHLKSQHDPRGLDALNFVVFGKALFATVGGQFGVCFDLPAWESCYKVIAMGITGNDMFS 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain F from PDB  Type:PROTEIN  Length:144
 aligned with S0BBR6_LAMSA | S0BBR6 from UniProtKB/TrEMBL  Length:160

    Alignment length:144
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156    
         S0BBR6_LAMSA    17 SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRVRGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGVSAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN 160
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wct F   1 SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRVRGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGVSAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN 144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain G from PDB  Type:PROTEIN  Length:150
 aligned with S0BCU7_LAMSA | S0BCU7 from UniProtKB/TrEMBL  Length:166

    Alignment length:150
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166
         S0BCU7_LAMSA    17 SSNSCTTEDRREMQLMWANVWSAQFTGRRLAIAQAVFKDLFAHVPDAVGLFDRVHGTEIDSSEFKAHCIRVVNGLDSAIGLLSDPSTLNEQLSHLATQHQERAGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITNGMTEGLAE 166
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.hhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3wct G   1 SSNSCTTEDRREMQLMWANVWSAQFTGRRLAIAQAVFKDLFAHVPDAVGLFDRVHGTEIDSSEFKAHCIRVVNGLDSAIGLLSDPSTLNEQLSHLATQHQERAGVTKGGFSAIAQSFLRVMPQVASCFNPDAWSRCFNRITNGMTEGLAE 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain H from PDB  Type:PROTEIN  Length:147
 aligned with S0BAP9_LAMSA | S0BAP9 from UniProtKB/TrEMBL  Length:168

    Alignment length:147
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       
         S0BAP9_LAMSA    22 FCSEADATIVIKQWNQIYNAGIGAKSRWTMGNEIFSSLFKLKPESEVLFNNVNVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPSLIDNFNPDAWRNCLLPLKNAIAKGLP 168
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wct H   3 FCSEADATIVIKQWNQIYNAGIGAKSRWTMGNEIFSSLFKLKPESEVLFNNVNVANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPSLIDNFNPDAWRNCLLPLKNAIAKGLP 149
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 36)

Visualization

Interactive Views

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FUC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		HEM	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		OXY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3wct)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Still Images

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Databases and Analysis Tools

Databases

Access by PDB/NDB ID
	3wct
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	S0BAP9_LAMSA \| S0BAP9
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	S0BBR6_LAMSA \| S0BBR6
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	S0BBU7_LAMSA \| S0BBU7
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	S0BCU7_LAMSA \| S0BCU7
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Analysis Tools

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	S0BAP9_LAMSA \| S0BAP9
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	S0BBR6_LAMSA \| S0BBR6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	S0BBU7_LAMSA \| S0BBU7
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	S0BCU7_LAMSA \| S0BCU7
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description