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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF A DEOXYGENATED 400 KDA HEMOGLOBIN PROVIDES ACCURATE DESCRIPTION OF THE COOPERATIVE MECHANISM OF GIANT HEMOGLOBINS: MG BOUND FORM
Keywords GLOBIN FOLD, OXYGEN TRANSPORT, OXYGEN BINDING, BLOOD
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3WCW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   A1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  A 146 1151 0
2  Protein   A2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  B 144 1120 0
3  Protein   B2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  C 150 1158 0
4  Protein   B1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  D 147 1125 0
5  Protein   A1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  E 146 1151 0
6  Protein   A2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  F 144 1120 0
7  Protein   B2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  G 150 1158 0
8  Protein   B1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  H 147 1125 0
9  Ligand    I 6 0 71
10  Ligand    J 6 0 71
11  Ligand   A1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  A 3 0 46
12  Ligand   A2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  B 3 0 46
13  Ligand   B2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  C 2 0 45
14  Ligand   B1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  D 2 0 45
15  Ligand   A1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  E 2 0 45
16  Ligand   A2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  F 3 0 46
17  Ligand   B2 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  G 2 0 45
18  Ligand   B1 GLOBIN CHAIN OF GIANT V2 HEMOGLOBIN  H 2 0 45
19 Water     212 0 212
total       1417 9108 717

Proteins
Unit 1 ASP1 CYS2 ASN3 ILE4 LEU5 GLN6 ARG7 LEU8 LYS9 VAL10 LYS11 MET12 GLN13 TRP14 ALA15 LYS16 ALA17 TYR18 GLY19 PHE20 GLY21 THR22 GLU23 ARG24 ALA25 LYS26 PHE27 GLY28 ASN29 SER30 LEU31 TRP32 THR33 SER34 ILE35 PHE36 ASN37 TYR38 ALA39 PRO40 ASP41 ALA42 ARG43 ASP44 LEU45 PHE46 LYS47 SER48 VAL49 LYS50 SER51 GLU52 ASP53 MET54 ARG55 SER56 PRO57 GLN58 PHE59 LYS60 ALA61 HIS62 ILE63 ALA64 ARG65 VAL66 ILE67 GLY68 GLY69 LEU70 ASP71 ARG72 VAL73 ILE74 SER75 MET76 PHE77 ASP78 ASN79 GLU80 ASP81 ALA82 LEU83 ASN84 ALA85 ASP86 LEU87 GLU88 HIS89 LEU90 LYS91 SER92 GLN93 HIS94 ASP95 PRO96 ARG97 GLY98 LEU99 ASP100 ALA101 LEU102 ASN103 PHE104 VAL105 VAL106 PHE107 GLY108 LYS109 ALA110 LEU111 PHE112 ALA113 THR114 VAL115 GLY116 GLY117 GLN118 PHE119 GLY120 VAL121 CYS122 PHE123 ASP124 LEU125 PRO126 ALA127 TRP128 GLU129 SER130 CYS131 TYR132 LYS133 VAL134 ILE135 ALA136 MET137 GLY138 ILE139 THR140 GLY141 ASN142 ASP143 MET144 PHE145 SER146
Unit 2 SER1 GLU2 CYS3 GLY4 PRO5 LEU6 GLN7 ARG8 LEU9 LYS10 VAL11 LYS12 ARG13 GLN14 TRP15 ALA16 GLU17 ALA18 TYR19 GLY20 SER21 GLY22 ASN23 GLY24 ARG25 GLU26 GLU27 PHE28 GLY29 HIS30 PHE31 ILE32 TRP33 ALA34 ASN35 VAL36 PHE37 LYS38 VAL39 ALA40 PRO41 SER42 ALA43 ARG44 ASP45 MET46 PHE47 LYS48 ARG49 VAL50 ARG51 GLY52 ASP53 ASN54 ILE55 TYR56 THR57 PRO58 ALA59 PHE60 ARG61 ALA62 HIS63 ALA64 THR65 ARG66 VAL67 LEU68 GLY69 GLY70 LEU71 ASP72 MET73 CYS74 VAL75 ALA76 LEU77 LEU78 ASP79 ASP80 GLU81 SER82 VAL83 LEU84 ASN85 THR86 GLN87 LEU88 ALA89 HIS90 LEU91 ALA92 SER93 GLN94 HIS95 SER96 SER97 ARG98 GLY99 VAL100 SER101 ALA102 GLU103 GLN104 TYR105 ASN106 VAL107 VAL108 GLU109 HIS110 ALA111 VAL112 MET113 MET114 GLY115 VAL116 GLU117 HIS118 GLU119 ILE120 GLY121 GLN122 ASN123 VAL124 PHE125 ASP126 LYS127 ASP128 ALA129 TRP130 GLN131 ALA132 CYS133 LEU134 ASP135 VAL136 ILE137 THR138 SER139 GLY140 ILE141 GLN142 GLY143 ASN144
Unit 3 SER1 SER2 ASN3 SER4 CYS5 THR6 THR7 GLU8 ASP9 ARG10 ARG11 GLU12 MET13 GLN14 LEU15 MET16 TRP17 ALA18 ASN19 VAL20 TRP21 SER22 ALA23 GLN24 PHE25 THR26 GLY27 ARG28 ARG29 LEU30 ALA31 ILE32 ALA33 GLN34 ALA35 VAL36 PHE37 LYS38 ASP39 LEU40 PHE41 ALA42 HIS43 VAL44 PRO45 ASP46 ALA47 VAL48 GLY49 LEU50 PHE51 ASP52 ARG53 VAL54 HIS55 GLY56 THR57 GLU58 ILE59 ASP60 SER61 SER62 GLU63 PHE64 LYS65 ALA66 HIS67 CYS68 ILE69 ARG70 VAL71 VAL72 ASN73 GLY74 LEU75 ASP76 SER77 ALA78 ILE79 GLY80 LEU81 LEU82 SER83 ASP84 PRO85 SER86 THR87 LEU88 ASN89 GLU90 GLN91 LEU92 SER93 HIS94 LEU95 ALA96 THR97 GLN98 HIS99 GLN100 GLU101 ARG102 ALA103 GLY104 VAL105 THR106 LYS107 GLY108 GLY109 PHE110 SER111 ALA112 ILE113 ALA114 GLN115 SER116 PHE117 LEU118 ARG119 VAL120 MET121 PRO122 GLN123 VAL124 ALA125 SER126 CYS127 PHE128 ASN129 PRO130 ASP131 ALA132 TRP133 SER134 ARG135 CYS136 PHE137 ASN138 ARG139 ILE140 THR141 ASN142 GLY143 MET144 THR145 GLU146 GLY147 LEU148 ALA149 GLU150
Unit 4 PHE3 CYS4 SER5 GLU6 ALA7 ASP8 ALA9 THR10 ILE11 VAL12 ILE13 LYS14 GLN15 TRP16 ASN17 GLN18 ILE19 TYR20 ASN21 ALA22 GLY23 ILE24 GLY25 ALA26 LYS27 SER28 ARG29 TRP30 THR31 MET32 GLY33 ASN34 GLU35 ILE36 PHE37 SER38 SER39 LEU40 PHE41 LYS42 LEU43 LYS44 PRO45 GLU46 SER47 GLU48 VAL49 LEU50 PHE51 ASN52 ASN53 VAL54 ASN55 VAL56 ALA57 ASN58 MET59 SER60 SER61 GLY62 ALA63 PHE64 HIS65 ALA66 HIS67 THR68 VAL69 ARG70 VAL71 LEU72 SER73 GLY74 LEU75 ASP76 MET77 GLY78 ILE79 ASN80 TYR81 LEU82 ASN83 ASP84 ALA85 GLY86 THR87 LEU88 THR89 SER90 LEU91 THR92 ALA93 HIS94 LEU95 ALA96 ALA97 GLN98 HIS99 VAL100 ALA101 ARG102 THR103 GLY104 LEU105 LYS106 ALA107 VAL108 TYR109 PHE110 ASP111 ALA112 MET113 GLY114 LYS115 VAL116 LEU117 MET118 THR119 VAL120 LEU121 PRO122 SER123 LEU124 ILE125 ASP126 ASN127 PHE128 ASN129 PRO130 ASP131 ALA132 TRP133 ARG134 ASN135 CYS136 LEU137 LEU138 PRO139 LEU140 LYS141 ASN142 ALA143 ILE144 ALA145 LYS146 GLY147 LEU148 PRO149
Unit 5 ASP1 CYS2 ASN3 ILE4 LEU5 GLN6 ARG7 LEU8 LYS9 VAL10 LYS11 MET12 GLN13 TRP14 ALA15 LYS16 ALA17 TYR18 GLY19 PHE20 GLY21 THR22 GLU23 ARG24 ALA25 LYS26 PHE27 GLY28 ASN29 SER30 LEU31 TRP32 THR33 SER34 ILE35 PHE36 ASN37 TYR38 ALA39 PRO40 ASP41 ALA42 ARG43 ASP44 LEU45 PHE46 LYS47 SER48 VAL49 LYS50 SER51 GLU52 ASP53 MET54 ARG55 SER56 PRO57 GLN58 PHE59 LYS60 ALA61 HIS62 ILE63 ALA64 ARG65 VAL66 ILE67 GLY68 GLY69 LEU70 ASP71 ARG72 VAL73 ILE74 SER75 MET76 PHE77 ASP78 ASN79 GLU80 ASP81 ALA82 LEU83 ASN84 ALA85 ASP86 LEU87 GLU88 HIS89 LEU90 LYS91 SER92 GLN93 HIS94 ASP95 PRO96 ARG97 GLY98 LEU99 ASP100 ALA101 LEU102 ASN103 PHE104 VAL105 VAL106 PHE107 GLY108 LYS109 ALA110 LEU111 PHE112 ALA113 THR114 VAL115 GLY116 GLY117 GLN118 PHE119 GLY120 VAL121 CYS122 PHE123 ASP124 LEU125 PRO126 ALA127 TRP128 GLU129 SER130 CYS131 TYR132 LYS133 VAL134 ILE135 ALA136 MET137 GLY138 ILE139 THR140 GLY141 ASN142 ASP143 MET144 PHE145 SER146
Unit 6 SER1 GLU2 CYS3 GLY4 PRO5 LEU6 GLN7 ARG8 LEU9 LYS10 VAL11 LYS12 ARG13 GLN14 TRP15 ALA16 GLU17 ALA18 TYR19 GLY20 SER21 GLY22 ASN23 GLY24 ARG25 GLU26 GLU27 PHE28 GLY29 HIS30 PHE31 ILE32 TRP33 ALA34 ASN35 VAL36 PHE37 LYS38 VAL39 ALA40 PRO41 SER42 ALA43 ARG44 ASP45 MET46 PHE47 LYS48 ARG49 VAL50 ARG51 GLY52 ASP53 ASN54 ILE55 TYR56 THR57 PRO58 ALA59 PHE60 ARG61 ALA62 HIS63 ALA64 THR65 ARG66 VAL67 LEU68 GLY69 GLY70 LEU71 ASP72 MET73 CYS74 VAL75 ALA76 LEU77 LEU78 ASP79 ASP80 GLU81 SER82 VAL83 LEU84 ASN85 THR86 GLN87 LEU88 ALA89 HIS90 LEU91 ALA92 SER93 GLN94 HIS95 SER96 SER97 ARG98 GLY99 VAL100 SER101 ALA102 GLU103 GLN104 TYR105 ASN106 VAL107 VAL108 GLU109 HIS110 ALA111 VAL112 MET113 MET114 GLY115 VAL116 GLU117 HIS118 GLU119 ILE120 GLY121 GLN122 ASN123 VAL124 PHE125 ASP126 LYS127 ASP128 ALA129 TRP130 GLN131 ALA132 CYS133 LEU134 ASP135 VAL136 ILE137 THR138 SER139 GLY140 ILE141 GLN142 GLY143 ASN144
Unit 7 SER1 SER2 ASN3 SER4 CYS5 THR6 THR7 GLU8 ASP9 ARG10 ARG11 GLU12 MET13 GLN14 LEU15 MET16 TRP17 ALA18 ASN19 VAL20 TRP21 SER22 ALA23 GLN24 PHE25 THR26 GLY27 ARG28 ARG29 LEU30 ALA31 ILE32 ALA33 GLN34 ALA35 VAL36 PHE37 LYS38 ASP39 LEU40 PHE41 ALA42 HIS43 VAL44 PRO45 ASP46 ALA47 VAL48 GLY49 LEU50 PHE51 ASP52 ARG53 VAL54 HIS55 GLY56 THR57 GLU58 ILE59 ASP60 SER61 SER62 GLU63 PHE64 LYS65 ALA66 HIS67 CYS68 ILE69 ARG70 VAL71 VAL72 ASN73 GLY74 LEU75 ASP76 SER77 ALA78 ILE79 GLY80 LEU81 LEU82 SER83 ASP84 PRO85 SER86 THR87 LEU88 ASN89 GLU90 GLN91 LEU92 SER93 HIS94 LEU95 ALA96 THR97 GLN98 HIS99 GLN100 GLU101 ARG102 ALA103 GLY104 VAL105 THR106 LYS107 GLY108 GLY109 PHE110 SER111 ALA112 ILE113 ALA114 GLN115 SER116 PHE117 LEU118 ARG119 VAL120 MET121 PRO122 GLN123 VAL124 ALA125 SER126 CYS127 PHE128 ASN129 PRO130 ASP131 ALA132 TRP133 SER134 ARG135 CYS136 PHE137 ASN138 ARG139 ILE140 THR141 ASN142 GLY143 MET144 THR145 GLU146 GLY147 LEU148 ALA149 GLU150
Unit 8 PHE3 CYS4 SER5 GLU6 ALA7 ASP8 ALA9 THR10 ILE11 VAL12 ILE13 LYS14 GLN15 TRP16 ASN17 GLN18 ILE19 TYR20 ASN21 ALA22 GLY23 ILE24 GLY25 ALA26 LYS27 SER28 ARG29 TRP30 THR31 MET32 GLY33 ASN34 GLU35 ILE36 PHE37 SER38 SER39 LEU40 PHE41 LYS42 LEU43 LYS44 PRO45 GLU46 SER47 GLU48 VAL49 LEU50 PHE51 ASN52 ASN53 VAL54 ASN55 VAL56 ALA57 ASN58 MET59 SER60 SER61 GLY62 ALA63 PHE64 HIS65 ALA66 HIS67 THR68 VAL69 ARG70 VAL71 LEU72 SER73 GLY74 LEU75 ASP76 MET77 GLY78 ILE79 ASN80 TYR81 LEU82 ASN83 ASP84 ALA85 GLY86 THR87 LEU88 THR89 SER90 LEU91 THR92 ALA93 HIS94 LEU95 ALA96 ALA97 GLN98 HIS99 VAL100 ALA101 ARG102 THR103 GLY104 LEU105 LYS106 ALA107 VAL108 TYR109 PHE110 ASP111 ALA112 MET113 GLY114 LYS115 VAL116 LEU117 MET118 THR119 VAL120 LEU121 PRO122 SER123 LEU124 ILE125 ASP126 ASN127 PHE128 ASN129 PRO130 ASP131 ALA132 TRP133 ARG134 ASN135 CYS136 LEU137 LEU138 PRO139 LEU140 LYS141 ASN142 ALA143 ILE144 ALA145 LYS146 GLY147 LEU148 PRO149

Ligands
Unit 9 NAG1 NAG2 MAN3 MAN4 MAN5 FUC6
Unit 10 NAG1 NAG2 MAN3 MAN4 MAN5 FUC6
Unit 11 HEM201 OXY202 MG203
Unit 12 HEM201 OXY202 MG203
Unit 13 HEM200 OXY201
Unit 14 HEM201 OXY202
Unit 15 HEM200 OXY201
Unit 16 HEM201 OXY202 MG203
Unit 17 HEM200 OXY201
Unit 18 HEM201 OXY202

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany