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(-) Description

Title :  CRYSTAL STRUCTURE OF N-TERMINAL FIRST SPECTRIN REPEAT OF DYSTROPHIN
 
Authors :  M. Muthu, K. A. Richardson, A. J. Sutherland-Smith
Date :  28 Nov 11  (Deposition) - 19 Sep 12  (Release) - 19 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Triple Helical, Cell Structure And Stability, Cytoskeletal, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Muthu, K. A. Richardson, A. J. Sutherland-Smith
The Crystal Structures Of Dystrophin And Utrophin Spectrin Repeats: Implications For Domain Boundaries
Plos One V. 7 40066 2012
PubMed-ID: 22911693  |  Reference-DOI: 10.1371/JOURNAL.PONE.0040066

(-) Compounds

Molecule 1 - DYSTROPHIN
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPROEXHTB
    Expression System StrainBL21 (DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentSPECTRIN REPEAT, UNP RESIDUES 338-456
    GeneDMD
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B
Biological Unit 3 (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3UUN)

(-) Sites  (0, 0)

(no "Site" information available for 3UUN)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:433 -B:433

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3UUN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 4)

Asymmetric Unit (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_005151Q365HDMD_HUMANPolymorphism1800266A/BQ365H
2UniProtVAR_057642T409SDMD_HUMANPolymorphism34155804A/BT409S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_005151Q365HDMD_HUMANPolymorphism1800266AQ365H
2UniProtVAR_057642T409SDMD_HUMANPolymorphism34155804AT409S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_005151Q365HDMD_HUMANPolymorphism1800266BQ365H
2UniProtVAR_057642T409SDMD_HUMANPolymorphism34155804BT409S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_005151Q365HDMD_HUMANPolymorphism1800266A/BQ365H
2UniProtVAR_057642T409SDMD_HUMANPolymorphism34155804A/BT409S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3UUN)

(-) Exons   (3, 6)

Asymmetric Unit (3, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2bENST000003570332bENSE00001899141X:33229636-33229399238DMD_HUMAN1-11110--
1.7bENST000003570337bENSE00001435901X:33038317-3303825662DMD_HUMAN11-31210--
1.9aENST000003570339aENSE00001614720X:32867937-3286784593DMD_HUMAN32-62310--
1.10ENST0000035703310ENSE00001640206X:32862977-3286290078DMD_HUMAN63-88260--
1.11ENST0000035703311ENSE00001685282X:32841504-3284141293DMD_HUMAN89-119310--
1.12aENST0000035703312aENSE00001789498X:32834757-32834585173DMD_HUMAN120-177580--
1.13ENST0000035703313ENSE00001436342X:32827728-32827610119DMD_HUMAN177-217410--
1.14ENST0000035703314ENSE00001436506X:32717410-32717229182DMD_HUMAN217-277610--
1.15ENST0000035703315ENSE00001434995X:32716115-32715987129DMD_HUMAN278-320430--
1.16ENST0000035703316ENSE00001435581X:32663269-32663081189DMD_HUMAN321-383632A:338-383
B:339-383
46
45
1.17ENST0000035703317ENSE00001435687X:32662430-32662249182DMD_HUMAN384-444612A:384-444
B:384-444
61
61
1.18ENST0000035703318ENSE00001435796X:32632570-32632420151DMD_HUMAN444-494512A:444-453
B:444-452
10
9
1.19ENST0000035703319ENSE00001436736X:32613993-32613874120DMD_HUMAN495-534400--
1.20ENST0000035703320ENSE00001034188X:32591963-32591862102DMD_HUMAN535-568340--
1.21cENST0000035703321cENSE00001479014X:32591754-32591647108DMD_HUMAN569-604360--
1.22ENST0000035703322ENSE00001434823X:32583998-32583819180DMD_HUMAN605-664600--
1.23ENST0000035703323ENSE00001435605X:32563451-32563276176DMD_HUMAN665-723590--
1.24aENST0000035703324aENSE00001436267X:32536248-32536125124DMD_HUMAN723-764420--
1.25ENST0000035703325ENSE00001436655X:32519959-3251987288DMD_HUMAN765-794300--
1.26ENST0000035703326ENSE00001436512X:32509635-32509394242DMD_HUMAN794-874810--
1.27ENST0000035703327ENSE00001435151X:32503216-32503036181DMD_HUMAN875-935610--
1.28ENST0000035703328ENSE00001435583X:32490426-32490281146DMD_HUMAN935-983490--
1.29ENST0000035703329ENSE00001435180X:32486827-32486615213DMD_HUMAN984-1054710--
1.30ENST0000035703330ENSE00001436271X:32482816-32482703114DMD_HUMAN1055-1092380--
1.31ENST0000035703331ENSE00001435906X:32481711-32481556156DMD_HUMAN1093-1144520--
1.32ENST0000035703332ENSE00001436731X:32472949-32472779171DMD_HUMAN1145-1201570--
1.33ENST0000035703333ENSE00001436545X:32466755-32466573183DMD_HUMAN1202-1262610--
1.34ENST0000035703334ENSE00001435146X:32459431-32459297135DMD_HUMAN1263-1307450--
1.35ENST0000035703335ENSE00001434999X:32456507-32456358150DMD_HUMAN1308-1357500--
1.38ENST0000035703338ENSE00001434585X:32430030-32429869162DMD_HUMAN1358-1411540--
1.39ENST0000035703339ENSE00001435573X:32408298-32408188111DMD_HUMAN1412-1448370--
1.40ENST0000035703340ENSE00001435218X:32407791-32407618174DMD_HUMAN1449-1506580--
1.41ENST0000035703341ENSE00001436039X:32404582-32404427156DMD_HUMAN1507-1558520--
1.42ENST0000035703342ENSE00001435954X:32398797-32398627171DMD_HUMAN1559-1615570--
1.43ENST0000035703343ENSE00000978409X:32383316-32383137180DMD_HUMAN1616-1675600--
1.44bENST0000035703344bENSE00001157370X:32382827-32382699129DMD_HUMAN1676-1718430--
1.45ENST0000035703345ENSE00001434721X:32381075-32380905171DMD_HUMAN1719-1775570--
1.46aENST0000035703346aENSE00001435398X:32366645-32366523123DMD_HUMAN1776-1816410--
1.47ENST0000035703347ENSE00001436772X:32364197-32364060138DMD_HUMAN1817-1862460--
1.48ENST0000035703348ENSE00001435120X:32361403-32361251153DMD_HUMAN1863-1913510--
1.50ENST0000035703350ENSE00001435597X:32360399-32360217183DMD_HUMAN1914-1974610--
1.51ENST0000035703351ENSE00001435825X:32328393-32328199195DMD_HUMAN1975-2039650--
1.52ENST0000035703352ENSE00001434843X:32305818-32305646173DMD_HUMAN2040-2097580--
1.53ENST0000035703353ENSE00001434686X:32235180-32235033148DMD_HUMAN2097-2146500--
1.55ENST0000035703355ENSE00001657981X:31986631-31986456176DMD_HUMAN2147-2205590--
1.56bENST0000035703356bENSE00001774237X:31950344-31950197148DMD_HUMAN2205-2254500--
1.57aENST0000035703357aENSE00001617885X:31947862-31947713150DMD_HUMAN2255-2304500--
1.58ENST0000035703358ENSE00001704105X:31893490-31893305186DMD_HUMAN2305-2366620--
1.59aENST0000035703359aENSE00001754131X:31854936-31854835102DMD_HUMAN2367-2400340--
1.60ENST0000035703360ENSE00001746471X:31838200-31838092109DMD_HUMAN2401-2437370--
1.61ENST0000035703361ENSE00001616109X:31792309-31792077233DMD_HUMAN2437-2514780--
1.62bENST0000035703362bENSE00001213215X:31747865-31747748118DMD_HUMAN2515-2554400--
1.63ENST0000035703363ENSE00001258577X:31697703-31697492212DMD_HUMAN2554-2624710--
1.64ENST0000035703364ENSE00001213199X:31676261-31676107155DMD_HUMAN2625-2676520--
1.65ENST0000035703365ENSE00001258641X:31645979-31645790190DMD_HUMAN2676-2739640--
1.67ENST0000035703367ENSE00001259225X:31525570-31525398173DMD_HUMAN2740-2797580--
1.68ENST0000035703368ENSE00001259203X:31515061-31514905157DMD_HUMAN2797-2849530--
1.69ENST0000035703369ENSE00001259198X:31497220-31497100121DMD_HUMAN2850-2890410--
1.70bENST0000035703370bENSE00001259193X:31496491-31496223269DMD_HUMAN2890-2979900--
1.71ENST0000035703371ENSE00001259171X:31462744-31462598147DMD_HUMAN2980-3028490--
1.73ENST0000035703373ENSE00001259181X:31366751-3136667379DMD_HUMAN3029-3055270--
1.74ENST0000035703374ENSE00001213363X:31341775-3134171561DMD_HUMAN3055-3075210--
1.76ENST0000035703376ENSE00001733920X:31279133-3127907262DMD_HUMAN3075-3096220--
1.77ENST0000035703377ENSE00001674239X:31241238-3124116475DMD_HUMAN3096-3121260--
1.78bENST0000035703378bENSE00001158950X:31227816-31227615202DMD_HUMAN3121-3188680--
1.79aENST0000035703379aENSE00001158943X:31224784-3122469986DMD_HUMAN3188-3217300--
1.80ENST0000035703380ENSE00001158937X:31222235-31222078158DMD_HUMAN3217-3269530--
1.81bENST0000035703381bENSE00001034045X:31201021-31200855167DMD_HUMAN3270-3325560--
1.82ENST0000035703382ENSE00001158926X:31198598-31198487112DMD_HUMAN3325-3362380--
1.83aENST0000035703383aENSE00001034039X:31196922-31196786137DMD_HUMAN3363-3408460--
1.84ENST0000035703384ENSE00001158912X:31196087-3119604939DMD_HUMAN3408-3421140--
1.85ENST0000035703385ENSE00001158905X:31191721-3119165666DMD_HUMAN3421-3443230--
1.86ENST0000035703386ENSE00001158901X:31190530-3119046566DMD_HUMAN3443-3465230--
1.87bENST0000035703387bENSE00001158895X:31187718-31187560159DMD_HUMAN3465-3518540--
1.88ENST0000035703388ENSE00001158887X:31165635-31165392244DMD_HUMAN3518-3599820--
1.89ENST0000035703389ENSE00001034085X:31164531-31164408124DMD_HUMAN3600-3641420--
1.90ENST0000035703390ENSE00001158874X:31152311-3115221993DMD_HUMAN3641-3672320--
1.91bENST0000035703391bENSE00001436107X:31144790-3114475932DMD_HUMAN3672-3682110--
1.92eENST0000035703392eENSE00001788214X:31140047-311373452703DMD_HUMAN3683-368530--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with DMD_HUMAN | P11532 from UniProtKB/Swiss-Prot  Length:3685

    Alignment length:116
                                   347       357       367       377       387       397       407       417       427       437       447      
            DMD_HUMAN   338 EVNLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQ 453
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------H-------------------------------------------S-------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.16  PDB: A:338-383 UniProt: 321-383    Exon 1.17  PDB: A:384-444 UniProt: 384-444                   --------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------Exon 1.18  Transcript 1 (2)
                 3uun A 338 EVNLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQ 453
                                   347       357       367       377       387       397       407       417       427       437       447      

Chain B from PDB  Type:PROTEIN  Length:114
 aligned with DMD_HUMAN | P11532 from UniProtKB/Swiss-Prot  Length:3685

    Alignment length:114
                                   348       358       368       378       388       398       408       418       428       438       448    
            DMD_HUMAN   339 VNLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDL 452
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------H-------------------------------------------S------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.16  PDB: B:339-383 UniProt: 321-383   Exon 1.17  PDB: B:384-444 UniProt: 384-444                   -------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------Exon 1.18 Transcript 1 (2)
                 3uun B 339 VNLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDL 452
                                   348       358       368       378       388       398       408       418       428       438       448    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3UUN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UUN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UUN)

(-) Gene Ontology  (58, 58)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (DMD_HUMAN | P11532)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0002162    dystroglycan binding    Interacting selectively and non-covalently with dystroglycan. Dystroglycan is glycoprotein found in non-muscle tissues as well as in muscle tissues, often in association with dystrophin. The native dystroglycan cleaved into two non-covalently associated subunits, alpha (N-terminal) and beta (C-terminal).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0017022    myosin binding    Interacting selectively and non-covalently with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments.
    GO:0050998    nitric-oxide synthase binding    Interacting selectively and non-covalently with the enzyme nitric-oxide synthase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
    GO:0008307    structural constituent of muscle    The action of a molecule that contributes to the structural integrity of a muscle fiber.
    GO:0017166    vinculin binding    Interacting selectively and non-covalently with vinculin, a protein found in muscle, fibroblasts, and epithelial cells that binds actin and appears to mediate attachment of actin filaments to integral proteins of the plasma membrane.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0086001    cardiac muscle cell action potential    An action potential that occurs in a cardiac muscle cell.
    GO:0060048    cardiac muscle contraction    Muscle contraction of cardiac muscle tissue.
    GO:0043623    cellular protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell.
    GO:0034613    cellular protein localization    Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
    GO:0044458    motile cilium assembly    The aggregation, arrangement and bonding together of a set of components to form a motile cilium.
    GO:0016203    muscle attachment    The developmental process in which a skeletal muscle attaches to its target (such as bone or body wall).
    GO:0046716    muscle cell cellular homeostasis    The cellular homeostatic process that preserves a muscle cell in a stable functional or structural state.
    GO:0048747    muscle fiber development    The process whose specific outcome is the progression of the muscle fiber over time, from its formation to the mature structure. In skeletal muscle, fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
    GO:0030049    muscle filament sliding    The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated.
    GO:0007517    muscle organ development    The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.
    GO:1902083    negative regulation of peptidyl-cysteine S-nitrosylation    Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-cysteine S-nitrosylation.
    GO:0033137    negative regulation of peptidyl-serine phosphorylation    Any process that stops, prevents, or reduces the frequency, rate or extent of the phosphorylation of peptidyl-serine.
    GO:0043043    peptide biosynthetic process    The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide.
    GO:0045666    positive regulation of neuron differentiation    Any process that activates or increases the frequency, rate or extent of neuron differentiation.
    GO:0010976    positive regulation of neuron projection development    Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:2000651    positive regulation of sodium ion transmembrane transporter activity    Any process that activates or increases the frequency, rate or extent of sodium ion transmembrane transporter activity.
    GO:0010881    regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion    Any process that modulates the frequency, rate or extent of cardiac muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.
    GO:0090287    regulation of cellular response to growth factor stimulus    Any process that modulates the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.
    GO:0002027    regulation of heart rate    Any process that modulates the frequency or rate of heart contraction.
    GO:0010880    regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum    Any process that modulates the rate, frequency or extent of release of sequestered calcium ion into cytosol by the sarcoplasmic reticulum, the process in which the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol occurs via calcium release channels.
    GO:0060314    regulation of ryanodine-sensitive calcium-release channel activity    Any process that modulates the activity of a ryanodine-sensitive calcium-release channel. The ryanodine-sensitive calcium-release channel catalyzes the transmembrane transfer of a calcium ion by a channel that opens when a ryanodine class ligand has been bound by the channel complex or one of its constituent parts.
    GO:0014819    regulation of skeletal muscle contraction    Any process that modulates the frequency, rate or extent of skeletal muscle contraction.
    GO:0014809    regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion    Any process that modulates the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.
    GO:1901385    regulation of voltage-gated calcium channel activity    Any process that modulates the frequency, rate or extent of voltage-gated calcium channel activity.
    GO:0035994    response to muscle stretch    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a myofibril being extended beyond its slack length.
cellular component
    GO:0030018    Z disc    Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0030055    cell-substrate junction    A cell junction that forms a connection between a cell and the extracellular matrix.
    GO:0043034    costamere    Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016010    dystrophin-associated glycoprotein complex    A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase.
    GO:0030175    filopodium    Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft.
    GO:0031527    filopodium membrane    The portion of the plasma membrane surrounding a filopodium.
    GO:0016328    lateral plasma membrane    The portion of the plasma membrane at the lateral side of the cell. In epithelial cells, lateral plasma membranes are on the sides of cells which lie at the interface of adjacent cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0045121    membrane raft    Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
    GO:0044306    neuron projection terminus    The specialized, terminal region of a neuron projection such as an axon or a dendrite.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045211    postsynaptic membrane    A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0042383    sarcolemma    The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
    GO:0016013    syntrophin complex    A protein complex that includes alpha-, beta1-, beta2-syntrophins and syntrophin-like proteins; the syntrophin complex binds to the second half of the carboxy-terminal domain of dystrophin; also associates with neuronal nitric oxide synthase.

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        DMD_HUMAN | P115321dxx 1eg3 1eg4

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