PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3UUN
Asym. Unit
Info
Asym.Unit (83 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (77 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF N-TERMINAL FIRST SPECTRIN REPEAT OF DYSTROPHIN
Authors
:
M. Muthu, K. A. Richardson, A. J. Sutherland-Smith
Date
:
28 Nov 11 (Deposition) - 19 Sep 12 (Release) - 19 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Triple Helical, Cell Structure And Stability, Cytoskeletal, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Muthu, K. A. Richardson, A. J. Sutherland-Smith
The Crystal Structures Of Dystrophin And Utrophin Spectrin Repeats: Implications For Domain Boundaries
Plos One V. 7 40066 2012
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_005151 (Q365H, chain A/B, )
2: VAR_057642 (T409S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_005151
Q
365
H
DMD_HUMAN
Polymorphism
1800266
A/B
Q
365
H
2
UniProt
VAR_057642
T
409
S
DMD_HUMAN
Polymorphism
34155804
A/B
T
409
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(3, 6)
Info
All Exons
Exon 1.16 (A:338-383 | B:339-383)
Exon 1.17 (A:384-444 | B:384-444)
Exon 1.18 (A:444-453 | B:444-452)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000357033
2b
ENSE00001899141
X:33229636-33229399
238
DMD_HUMAN
1-11
11
0
-
-
1.7b
ENST00000357033
7b
ENSE00001435901
X:33038317-33038256
62
DMD_HUMAN
11-31
21
0
-
-
1.9a
ENST00000357033
9a
ENSE00001614720
X:32867937-32867845
93
DMD_HUMAN
32-62
31
0
-
-
1.10
ENST00000357033
10
ENSE00001640206
X:32862977-32862900
78
DMD_HUMAN
63-88
26
0
-
-
1.11
ENST00000357033
11
ENSE00001685282
X:32841504-32841412
93
DMD_HUMAN
89-119
31
0
-
-
1.12a
ENST00000357033
12a
ENSE00001789498
X:32834757-32834585
173
DMD_HUMAN
120-177
58
0
-
-
1.13
ENST00000357033
13
ENSE00001436342
X:32827728-32827610
119
DMD_HUMAN
177-217
41
0
-
-
1.14
ENST00000357033
14
ENSE00001436506
X:32717410-32717229
182
DMD_HUMAN
217-277
61
0
-
-
1.15
ENST00000357033
15
ENSE00001434995
X:32716115-32715987
129
DMD_HUMAN
278-320
43
0
-
-
1.16
ENST00000357033
16
ENSE00001435581
X:32663269-32663081
189
DMD_HUMAN
321-383
63
2
A:338-383
B:339-383
46
45
1.17
ENST00000357033
17
ENSE00001435687
X:32662430-32662249
182
DMD_HUMAN
384-444
61
2
A:384-444
B:384-444
61
61
1.18
ENST00000357033
18
ENSE00001435796
X:32632570-32632420
151
DMD_HUMAN
444-494
51
2
A:444-453
B:444-452
10
9
1.19
ENST00000357033
19
ENSE00001436736
X:32613993-32613874
120
DMD_HUMAN
495-534
40
0
-
-
1.20
ENST00000357033
20
ENSE00001034188
X:32591963-32591862
102
DMD_HUMAN
535-568
34
0
-
-
1.21c
ENST00000357033
21c
ENSE00001479014
X:32591754-32591647
108
DMD_HUMAN
569-604
36
0
-
-
1.22
ENST00000357033
22
ENSE00001434823
X:32583998-32583819
180
DMD_HUMAN
605-664
60
0
-
-
1.23
ENST00000357033
23
ENSE00001435605
X:32563451-32563276
176
DMD_HUMAN
665-723
59
0
-
-
1.24a
ENST00000357033
24a
ENSE00001436267
X:32536248-32536125
124
DMD_HUMAN
723-764
42
0
-
-
1.25
ENST00000357033
25
ENSE00001436655
X:32519959-32519872
88
DMD_HUMAN
765-794
30
0
-
-
1.26
ENST00000357033
26
ENSE00001436512
X:32509635-32509394
242
DMD_HUMAN
794-874
81
0
-
-
1.27
ENST00000357033
27
ENSE00001435151
X:32503216-32503036
181
DMD_HUMAN
875-935
61
0
-
-
1.28
ENST00000357033
28
ENSE00001435583
X:32490426-32490281
146
DMD_HUMAN
935-983
49
0
-
-
1.29
ENST00000357033
29
ENSE00001435180
X:32486827-32486615
213
DMD_HUMAN
984-1054
71
0
-
-
1.30
ENST00000357033
30
ENSE00001436271
X:32482816-32482703
114
DMD_HUMAN
1055-1092
38
0
-
-
1.31
ENST00000357033
31
ENSE00001435906
X:32481711-32481556
156
DMD_HUMAN
1093-1144
52
0
-
-
1.32
ENST00000357033
32
ENSE00001436731
X:32472949-32472779
171
DMD_HUMAN
1145-1201
57
0
-
-
1.33
ENST00000357033
33
ENSE00001436545
X:32466755-32466573
183
DMD_HUMAN
1202-1262
61
0
-
-
1.34
ENST00000357033
34
ENSE00001435146
X:32459431-32459297
135
DMD_HUMAN
1263-1307
45
0
-
-
1.35
ENST00000357033
35
ENSE00001434999
X:32456507-32456358
150
DMD_HUMAN
1308-1357
50
0
-
-
1.38
ENST00000357033
38
ENSE00001434585
X:32430030-32429869
162
DMD_HUMAN
1358-1411
54
0
-
-
1.39
ENST00000357033
39
ENSE00001435573
X:32408298-32408188
111
DMD_HUMAN
1412-1448
37
0
-
-
1.40
ENST00000357033
40
ENSE00001435218
X:32407791-32407618
174
DMD_HUMAN
1449-1506
58
0
-
-
1.41
ENST00000357033
41
ENSE00001436039
X:32404582-32404427
156
DMD_HUMAN
1507-1558
52
0
-
-
1.42
ENST00000357033
42
ENSE00001435954
X:32398797-32398627
171
DMD_HUMAN
1559-1615
57
0
-
-
1.43
ENST00000357033
43
ENSE00000978409
X:32383316-32383137
180
DMD_HUMAN
1616-1675
60
0
-
-
1.44b
ENST00000357033
44b
ENSE00001157370
X:32382827-32382699
129
DMD_HUMAN
1676-1718
43
0
-
-
1.45
ENST00000357033
45
ENSE00001434721
X:32381075-32380905
171
DMD_HUMAN
1719-1775
57
0
-
-
1.46a
ENST00000357033
46a
ENSE00001435398
X:32366645-32366523
123
DMD_HUMAN
1776-1816
41
0
-
-
1.47
ENST00000357033
47
ENSE00001436772
X:32364197-32364060
138
DMD_HUMAN
1817-1862
46
0
-
-
1.48
ENST00000357033
48
ENSE00001435120
X:32361403-32361251
153
DMD_HUMAN
1863-1913
51
0
-
-
1.50
ENST00000357033
50
ENSE00001435597
X:32360399-32360217
183
DMD_HUMAN
1914-1974
61
0
-
-
1.51
ENST00000357033
51
ENSE00001435825
X:32328393-32328199
195
DMD_HUMAN
1975-2039
65
0
-
-
1.52
ENST00000357033
52
ENSE00001434843
X:32305818-32305646
173
DMD_HUMAN
2040-2097
58
0
-
-
1.53
ENST00000357033
53
ENSE00001434686
X:32235180-32235033
148
DMD_HUMAN
2097-2146
50
0
-
-
1.55
ENST00000357033
55
ENSE00001657981
X:31986631-31986456
176
DMD_HUMAN
2147-2205
59
0
-
-
1.56b
ENST00000357033
56b
ENSE00001774237
X:31950344-31950197
148
DMD_HUMAN
2205-2254
50
0
-
-
1.57a
ENST00000357033
57a
ENSE00001617885
X:31947862-31947713
150
DMD_HUMAN
2255-2304
50
0
-
-
1.58
ENST00000357033
58
ENSE00001704105
X:31893490-31893305
186
DMD_HUMAN
2305-2366
62
0
-
-
1.59a
ENST00000357033
59a
ENSE00001754131
X:31854936-31854835
102
DMD_HUMAN
2367-2400
34
0
-
-
1.60
ENST00000357033
60
ENSE00001746471
X:31838200-31838092
109
DMD_HUMAN
2401-2437
37
0
-
-
1.61
ENST00000357033
61
ENSE00001616109
X:31792309-31792077
233
DMD_HUMAN
2437-2514
78
0
-
-
1.62b
ENST00000357033
62b
ENSE00001213215
X:31747865-31747748
118
DMD_HUMAN
2515-2554
40
0
-
-
1.63
ENST00000357033
63
ENSE00001258577
X:31697703-31697492
212
DMD_HUMAN
2554-2624
71
0
-
-
1.64
ENST00000357033
64
ENSE00001213199
X:31676261-31676107
155
DMD_HUMAN
2625-2676
52
0
-
-
1.65
ENST00000357033
65
ENSE00001258641
X:31645979-31645790
190
DMD_HUMAN
2676-2739
64
0
-
-
1.67
ENST00000357033
67
ENSE00001259225
X:31525570-31525398
173
DMD_HUMAN
2740-2797
58
0
-
-
1.68
ENST00000357033
68
ENSE00001259203
X:31515061-31514905
157
DMD_HUMAN
2797-2849
53
0
-
-
1.69
ENST00000357033
69
ENSE00001259198
X:31497220-31497100
121
DMD_HUMAN
2850-2890
41
0
-
-
1.70b
ENST00000357033
70b
ENSE00001259193
X:31496491-31496223
269
DMD_HUMAN
2890-2979
90
0
-
-
1.71
ENST00000357033
71
ENSE00001259171
X:31462744-31462598
147
DMD_HUMAN
2980-3028
49
0
-
-
1.73
ENST00000357033
73
ENSE00001259181
X:31366751-31366673
79
DMD_HUMAN
3029-3055
27
0
-
-
1.74
ENST00000357033
74
ENSE00001213363
X:31341775-31341715
61
DMD_HUMAN
3055-3075
21
0
-
-
1.76
ENST00000357033
76
ENSE00001733920
X:31279133-31279072
62
DMD_HUMAN
3075-3096
22
0
-
-
1.77
ENST00000357033
77
ENSE00001674239
X:31241238-31241164
75
DMD_HUMAN
3096-3121
26
0
-
-
1.78b
ENST00000357033
78b
ENSE00001158950
X:31227816-31227615
202
DMD_HUMAN
3121-3188
68
0
-
-
1.79a
ENST00000357033
79a
ENSE00001158943
X:31224784-31224699
86
DMD_HUMAN
3188-3217
30
0
-
-
1.80
ENST00000357033
80
ENSE00001158937
X:31222235-31222078
158
DMD_HUMAN
3217-3269
53
0
-
-
1.81b
ENST00000357033
81b
ENSE00001034045
X:31201021-31200855
167
DMD_HUMAN
3270-3325
56
0
-
-
1.82
ENST00000357033
82
ENSE00001158926
X:31198598-31198487
112
DMD_HUMAN
3325-3362
38
0
-
-
1.83a
ENST00000357033
83a
ENSE00001034039
X:31196922-31196786
137
DMD_HUMAN
3363-3408
46
0
-
-
1.84
ENST00000357033
84
ENSE00001158912
X:31196087-31196049
39
DMD_HUMAN
3408-3421
14
0
-
-
1.85
ENST00000357033
85
ENSE00001158905
X:31191721-31191656
66
DMD_HUMAN
3421-3443
23
0
-
-
1.86
ENST00000357033
86
ENSE00001158901
X:31190530-31190465
66
DMD_HUMAN
3443-3465
23
0
-
-
1.87b
ENST00000357033
87b
ENSE00001158895
X:31187718-31187560
159
DMD_HUMAN
3465-3518
54
0
-
-
1.88
ENST00000357033
88
ENSE00001158887
X:31165635-31165392
244
DMD_HUMAN
3518-3599
82
0
-
-
1.89
ENST00000357033
89
ENSE00001034085
X:31164531-31164408
124
DMD_HUMAN
3600-3641
42
0
-
-
1.90
ENST00000357033
90
ENSE00001158874
X:31152311-31152219
93
DMD_HUMAN
3641-3672
32
0
-
-
1.91b
ENST00000357033
91b
ENSE00001436107
X:31144790-31144759
32
DMD_HUMAN
3672-3682
11
0
-
-
1.92e
ENST00000357033
92e
ENSE00001788214
X:31140047-31137345
2703
DMD_HUMAN
3683-3685
3
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (83 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
Biol.Unit 3 (77 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3UUN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help