3UGX - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF VISUAL ARRESTIN

Authors :   R. Batra-Safferling, J. Granzin

Date :   03 Nov 11 (Deposition) - 08 Feb 12 (Release) - 21 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Arrestin Fold, Signal Termination, Gpcr, Outer Segment, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Granzin, A. Cousin, M. Weirauch, R. Schlesinger, G. Buldt, R. Batra-Safferling
Crystal Structure Of P44, A Constitutively Active Splice Variant Of Visual Arrestin.
J. Mol. Biol. V. 416 611 2012
PubMed-ID: 22306737 | Reference-DOI: 10.1016/J.JMB.2012.01.028

Molecule 1 - S-ARRESTIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	SACCHAROMYCES CEREVISIAE
	Expression System Taxid	:	4932
	Gene	:	SAG
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	48 KDA PROTEIN, RETINAL S-ANTIGEN, S-AG, ROD PHOTORECEPTOR ARRESTIN, S-ARRESTIN SHORT FORM

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 27)

No.	Name	Count	Type	Full Name
1	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
2	IMD	3	Ligand/Ion	IMIDAZOLE
3	K	1	Ligand/Ion	POTASSIUM ION
4	NA	2	Ligand/Ion	SODIUM ION
5	PTD	14	Ligand/Ion	PENTANEDIAL

Biological Unit 1 (2, 10)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	IMD	-1	Ligand/Ion	IMIDAZOLE
3	K	-1	Ligand/Ion	POTASSIUM ION
4	NA	-1	Ligand/Ion	SODIUM ION
5	PTD	8	Ligand/Ion	PENTANEDIAL

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	IMD	1	Ligand/Ion	IMIDAZOLE
3	K	-1	Ligand/Ion	POTASSIUM ION
4	NA	-1	Ligand/Ion	SODIUM ION
5	PTD	2	Ligand/Ion	PENTANEDIAL

Biological Unit 3 (2, 6)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	IMD	-1	Ligand/Ion	IMIDAZOLE
3	K	-1	Ligand/Ion	POTASSIUM ION
4	NA	-1	Ligand/Ion	SODIUM ION
5	PTD	3	Ligand/Ion	PENTANEDIAL

Biological Unit 4 (3, 4)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	IMD	2	Ligand/Ion	IMIDAZOLE
3	K	-1	Ligand/Ion	POTASSIUM ION
4	NA	-1	Ligand/Ion	SODIUM ION
5	PTD	1	Ligand/Ion	PENTANEDIAL

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:19 , LYS A:55 , HIS A:155 , MET A:198	BINDING SITE FOR RESIDUE PTD A 405
02	AC2	SOFTWARE	TYR A:58 , GLN A:87 , GLN C:87 , PHE C:152	BINDING SITE FOR RESIDUE PTD A 406
03	AC3	SOFTWARE	VAL A:248 , TYR A:250 , SER A:252 , PTD A:412	BINDING SITE FOR RESIDUE PTD A 407
04	AC4	SOFTWARE	THR A:258 , ALA A:261 , ASN A:286 , ASN A:287 , HOH A:430	BINDING SITE FOR RESIDUE PTD A 408
05	AC5	SOFTWARE	LYS A:14 , TYR A:25 , PHE A:377	BINDING SITE FOR RESIDUE PTD A 409
06	AC6	SOFTWARE	PRO A:127 , CYS A:128 , VAL A:130 , GLN A:178 , SER A:308 , SER A:309 , THR A:310 , ILE A:311 , ILE A:323 , HOH A:436	BINDING SITE FOR RESIDUE PTD A 410
07	AC7	SOFTWARE	TYR A:125 , VAL C:94 , GLY C:95 , ALA C:96	BINDING SITE FOR RESIDUE PTD A 411
08	AC8	SOFTWARE	LYS A:318 , LEU A:324 , PTD A:407	BINDING SITE FOR RESIDUE PTD A 412
09	AC9	SOFTWARE	SER A:199 , GLU A:231	BINDING SITE FOR RESIDUE NA A 413
10	BC1	SOFTWARE	TYR A:84 , PHE A:85 , VAL C:88 , GLN C:89 , VAL C:94	BINDING SITE FOR RESIDUE EDO A 414
11	BC2	SOFTWARE	LYS A:267 , PHE B:197 , ASP B:200	BINDING SITE FOR RESIDUE EDO A 415
12	BC3	SOFTWARE	ARG B:66 , GLU B:70 , MET B:131 , CYS B:143 , ASP B:146 , HOH B:435	BINDING SITE FOR RESIDUE IMD B 405
13	BC4	SOFTWARE	TYR B:67 , TYR B:250 , SER B:251	BINDING SITE FOR RESIDUE PTD B 406
14	BC5	SOFTWARE	LYS B:318 , LEU B:324	BINDING SITE FOR RESIDUE PTD B 407
15	BC6	SOFTWARE	VAL A:159 , GLN B:195 , HOH B:411 , HOH B:426 , HOH B:431	BINDING SITE FOR RESIDUE NA B 408
16	BC7	SOFTWARE	ASN A:271 , SER A:272 , SER A:273 , GLU B:350	BINDING SITE FOR RESIDUE EDO B 409
17	BC8	SOFTWARE	TYR C:250 , SER C:251 , SER C:252	BINDING SITE FOR RESIDUE PTD C 405
18	BC9	SOFTWARE	ASP B:73 , VAL B:74 , GLY B:76 , GLN C:187 , PRO C:188 , ARG C:189 , GLU C:350 , PRO C:352 , HOH C:455	BINDING SITE FOR RESIDUE PTD C 406
19	CC1	SOFTWARE	GLU C:212 , THR C:310 , VAL C:325 , SER C:326 , PRO C:352 , PHE C:353 , ARG C:354 , HOH C:412	BINDING SITE FOR RESIDUE PTD C 407
20	CC2	SOFTWARE	GLU D:350	BINDING SITE FOR RESIDUE K C 408
21	CC3	SOFTWARE	GLU A:160 , ASP A:162 , LYS C:150 , ILE C:164 , LYS C:166	BINDING SITE FOR RESIDUE EDO C 409
22	CC4	SOFTWARE	VAL A:88 , GLN A:89 , VAL A:94 , TYR C:84 , PHE C:85	BINDING SITE FOR RESIDUE EDO C 410
23	CC5	SOFTWARE	LEU C:274 , THR C:275 , GLU D:346 , ALA D:348	BINDING SITE FOR RESIDUE EDO C 411
24	CC6	SOFTWARE	ARG D:66 , CYS D:143 , ASP D:146 , HOH D:430	BINDING SITE FOR RESIDUE IMD D 405
25	CC7	SOFTWARE	PRO D:127 , CYS D:128 , VAL D:130 , THR D:310 , ILE D:323 , HOH D:432 , HOH D:443	BINDING SITE FOR RESIDUE IMD D 406
26	CC8	SOFTWARE	LYS D:318 , LEU D:324	BINDING SITE FOR RESIDUE PTD D 407
27	CC9	SOFTWARE	GLN D:187 , LYS D:211 , ILE D:213 , TYR D:215 , GLU D:218	BINDING SITE FOR RESIDUE EDO D 408

(no "SS Bond" information available for 3UGX)

Asymmetric Unit

No.	Residues
1	Ile A:72	-	Asp A:73
2	Phe A:91	-	Pro A:92
3	Phe B:91	-	Pro B:92
4	Asp B:158	-	Val B:159
5	Phe C:91	-	Pro C:92
6	Phe D:91	-	Pro D:92

(no "SAP(SNP)/Variant" information available for 3UGX)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARRESTINS	PS00295	Arrestins signature.	ARRS_BOVIN	65-83	4	A:65-83 B:65-83 C:65-83 D:65-83

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARRESTINS	PS00295	Arrestins signature.	ARRS_BOVIN	65-83	1	A:65-83 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARRESTINS	PS00295	Arrestins signature.	ARRS_BOVIN	65-83	1	- B:65-83 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARRESTINS	PS00295	Arrestins signature.	ARRS_BOVIN	65-83	1	- - C:65-83 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARRESTINS	PS00295	Arrestins signature.	ARRS_BOVIN	65-83	1	- - - D:65-83

Asymmetric Unit (15, 58)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSBTAT00000028633	1	ENSBTAE00000264532	chr3:120323559-120323664	106	ARRS_BOVIN	-	0	0	-	-
1.2	ENSBTAT00000028633	2	ENSBTAE00000264531	chr3:120324357-120324487	131	ARRS_BOVIN	1-25	25	4	A:9-25 B:11-25 C:9-25 D:9-25	17 15 17 17
1.3	ENSBTAT00000028633	3	ENSBTAE00000233945	chr3:120328854-120328914	61	ARRS_BOVIN	26-46	21	4	A:26-46 B:26-46 C:26-46 D:26-46	21 21 21 21
1.4	ENSBTAT00000028633	4	ENSBTAE00000233946	chr3:120331269-120331313	45	ARRS_BOVIN	46-61	16	4	A:46-61 B:46-61 C:46-61 D:46-61	16 16 16 16
1.5	ENSBTAT00000028633	5	ENSBTAE00000233947	chr3:120333403-120333596	194	ARRS_BOVIN	61-125	65	4	A:61-125 B:61-125 (gaps) C:61-125 (gaps) D:61-125 (gaps)	65 65 65 65
1.6	ENSBTAT00000028633	6	ENSBTAE00000233948	chr3:120334857-120334916	60	ARRS_BOVIN	126-145	20	4	A:126-145 B:126-145 C:126-145 D:126-145	20 20 20 20
1.7	ENSBTAT00000028633	7	ENSBTAE00000264537	chr3:120336535-120336611	77	ARRS_BOVIN	146-171	26	4	A:146-171 B:146-171 (gaps) C:146-171 D:146-171 (gaps)	26 26 26 26
1.8	ENSBTAT00000028633	8	ENSBTAE00000233950	chr3:120337650-120337785	136	ARRS_BOVIN	171-216	46	4	A:171-216 B:171-216 C:171-216 D:171-216	46 46 46 46
1.9	ENSBTAT00000028633	9	ENSBTAE00000233951	chr3:120338752-120338836	85	ARRS_BOVIN	217-245	29	4	A:217-245 B:217-245 C:217-245 D:217-245	29 29 29 29
1.10	ENSBTAT00000028633	10	ENSBTAE00000233952	chr3:120340732-120340804	73	ARRS_BOVIN	245-269	25	4	A:245-269 B:245-269 C:245-269 D:245-269	25 25 25 25
1.11	ENSBTAT00000028633	11	ENSBTAE00000233953	chr3:120343177-120343314	138	ARRS_BOVIN	269-315	47	4	A:269-315 B:269-315 C:269-315 D:269-315	47 47 47 47
1.12	ENSBTAT00000028633	12	ENSBTAE00000233954	chr3:120345389-120345466	78	ARRS_BOVIN	315-341	27	4	A:315-341 B:315-338 C:315-339 D:315-337	27 24 25 23
1.13	ENSBTAT00000028633	13	ENSBTAE00000423082	chr3:120348241-120348264	24	ARRS_BOVIN	341-349	9	4	A:341-349 B:343-349 C:344-349 D:343-349	9 7 6 7
1.14	ENSBTAT00000028633	14	ENSBTAE00000264530	chr3:120350100-120350155	56	ARRS_BOVIN	349-368	20	4	A:349-362 B:349-362 C:349-362 D:349-361	14 14 14 13
1.15	ENSBTAT00000028633	15	ENSBTAE00000392917	chr3:120352804-120352819	16	ARRS_BOVIN	368-373	6	2	A:372-373 - C:372-373 -	2 - 2 -
1.17	ENSBTAT00000028633	17	ENSBTAE00000233957	chr3:120353845-120353953	109	ARRS_BOVIN	373-408	36	4	A:373-386 B:376-385 C:373-386 D:374-385	14 10 14 12

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:369
 aligned with ARRS_BOVIN | P08168 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:378
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378        
           ARRS_BOVIN     9 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDPDTAKESFQDENFVFEEFARQNLK 386
               SCOP domains d3ugxa1 A:9-182 automated matches                                                                                                                                             d3ugxa2 A:183-386 automated matches                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....eeeee...eeee.......eeeeeeehhhhhh..eeeeeeeeeeee...........eeeeeeeeeeeee.........hhhhhhhhhhhh..eeeeee.........eee..........eeeeeeeeeeee..........hhhhheeeeeeeee..........eeeeeee.......eeeeeee...eee....eeeeeeeee.....eeeeeeeeeeeeee......eeeeeeeeee........eeeeeeeee..hhhhh.............................hhhhh.eeeeeeeeeeeee...........eeeeeeeeee......---------...eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------ARRESTINS          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2         Exon 1.3  PDB: A:26-4--------------Exon 1.5  PDB: A:61-125 UniProt: 61-125                          Exon 1.6            Exon 1.7  PDB: A:146-171  -------------------------------------------------------------------------Exon 1.10  PDB: A:245-269---------------------------------------------Exon 1.12  PDB: A:315-341  -------Exon 1.14           ----Exon 1.17      Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.4        -------------------------------------------------------------------------------------------------------------Exon 1.8  PDB: A:171-216 UniProt: 171-216     Exon 1.9  PDB: A:217-245     -----------------------Exon 1.11  PDB: A:269-315 UniProt: 269-315     -------------------------Exon 1.13------------------1.15  ------------- Transcript 1 (2)
                 3ugx A   9 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPED---------DENFVFEEFARQNLK 386
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358   |     -   |   378        
                                                                                                                                                                                                                                                                                                                                                                                           362       372

Chain B from PDB  Type:PROTEIN  Length:352
 aligned with ARRS_BOVIN | P08168 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:375
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
           ARRS_BOVIN    11 VIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDPDTAKESFQDENFVFEEFARQNL 385
               SCOP domains d3ugxb1 B:11-182 automated matches                                                                                                                                          d3ugxb2 B:183-385 automated matches                                                                                                                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......eeee...eeee.......eeeeee........eeeeeeeeeeeee........eeeeeeeeeeeeeeee....--...hhhhhhhhhhhh..eeeeee.........eee..........eeeeeeeeeeeee....----.hhh.eeeee.eeee............eeeeeeee..eeeeeeeee...eee....eeeeeeeee....eeeeeeeeeeeeeee......eeeeeeeeeeeeeee...eeeeeeeee....................................hhhhh.eeeeeeeeeeeeee..----..eeeeeeeeeeee......-------------.eee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------ARRESTINS          -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2       Exon 1.3  PDB: B:26-4--------------Exon 1.5  PDB: B:61-125 (gaps) UniProt: 61-125                   Exon 1.6            Exon 1.7 UniProt: 146-171 -------------------------------------------------------------------------Exon 1.10  PDB: B:245-269---------------------------------------------Exon 1.12  PDB: B:315-338  -------Exon 1.14           ----Exon 1.17     Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.4        -------------------------------------------------------------------------------------------------------------Exon 1.8  PDB: B:171-216 UniProt: 171-216     Exon 1.9  PDB: B:217-245     -----------------------Exon 1.11  PDB: B:269-315 UniProt: 269-315     -------------------------Exon 1.13------------------1.15  ------------ Transcript 1 (2)
                 3ugx B  11 VIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVG--GATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDV----IPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGL----TSSEVATEVPFRLMHPQPED-------------VFEEFARQNL 385
                                    20        30        40        50        60        70        80        90    |  100       110       120       130       140       150        |-   |   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       | -  |    350       360 |       -     | 380     
                                                                                                               95 98                                                          159  164                                                                                                                                                                           338  343                362           376

Chain C from PDB  Type:PROTEIN  Length:358
 aligned with ARRS_BOVIN | P08168 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:378
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378        
           ARRS_BOVIN     9 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDPDTAKESFQDENFVFEEFARQNLK 386
               SCOP domains d3ugxc1 C:9-182 automated matches                                                                                                                                             d3ugxc2 C:183-386 automated matches                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....eeeee...eeee.......eeeeeee........eeeeeeeeeeee..-------..eeeeeeeeeeeee.........hhhhhhhhhhhh..eeeeee.........eee..........eeeeeeeeeeeeeeee..eee.hhhhheeeeeeeee..........eeeeeee......eeeeeeee...eee....eeeeeeeee.....eeeeeeeeeeeeee.....eeeeeeeeeee........eeeeeeeee..hhhhh.............................hhhhh.eeeeeeeeeeeee....----.eeeeeeeeeeee......---------...eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------ARRESTINS          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2         Exon 1.3  PDB: C:26-4--------------Exon 1.5  PDB: C:61-125 (gaps) UniProt: 61-125                   Exon 1.6            Exon 1.7  PDB: C:146-171  -------------------------------------------------------------------------Exon 1.10  PDB: C:245-269---------------------------------------------Exon 1.12  PDB: C:315-339  -------Exon 1.14           ----Exon 1.17      Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.4        -------------------------------------------------------------------------------------------------------------Exon 1.8  PDB: C:171-216 UniProt: 171-216     Exon 1.9  PDB: C:217-245     -----------------------Exon 1.11  PDB: C:269-315 UniProt: 269-315     -------------------------Exon 1.13------------------1.15  ------------- Transcript 1 (2)
                 3ugx C   9 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQ-------LSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLL----SSEVATEVPFRLMHPQPED---------DENFVFEEFARQNLK 386
                                    18        28        38        48        58        68|       78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338|    | 348       358   |     -   |   378        
                                                                                       69      77                                                                                                                                                                                                                                                                   339  344               362       372

Chain D from PDB  Type:PROTEIN  Length:348
 aligned with ARRS_BOVIN | P08168 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:377
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       
           ARRS_BOVIN     9 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQPEDPDTAKESFQDENFVFEEFARQNL 385
               SCOP domains d3ugxd1 D:9-182 automated matches                                                                                                                                             d3ugxd2 D:183-385 automated matches                                                                                                                                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeee...eeee.......eeeeeee........eeeeeeeeeeee.......eeeeeeeeeeeeeeeee...-----.hhhhhhhhhhhh..eeeeee.........eee..........eeeeeeeeeeee-------...hhh.eeeeeeeeee...........eeeeeeeee..eeeeeeeee...eee....eeeeeeeee....eeeeeeeeeeeeeee.....eeeeeeeeeeeeeeee...eeeeeeeee..hhhhh.............................hhhhh.eeeeeeeeeeeeee.-----..eeeeeeeeeeee.....------------.eeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------ARRESTINS          -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2         Exon 1.3  PDB: D:26-4--------------Exon 1.5  PDB: D:61-125 (gaps) UniProt: 61-125                   Exon 1.6            Exon 1.7 UniProt: 146-171 -------------------------------------------------------------------------Exon 1.10  PDB: D:245-269---------------------------------------------Exon 1.12  PDB: D:315-337  -------Exon 1.14           ----Exon 1.17     Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.4        -------------------------------------------------------------------------------------------------------------Exon 1.8  PDB: D:171-216 UniProt: 171-216     Exon 1.9  PDB: D:217-245     -----------------------Exon 1.11  PDB: D:269-315 UniProt: 269-315     -------------------------Exon 1.13------------------1.15  ------------ Transcript 1 (2)
                 3ugx D   9 NHVIFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPV-----TTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFAT-------DKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSG-----TSSEVATEVPFRLMHPQPE------------NFVFEEFARQNL 385
                                    18        28        38        48        58        68        78        88     |   - |     108       118       128       138       148     |   -   |   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328        |-    |  348       358  |      -     | 378       
                                                                                                                94   100                                                   154     162                                                                                                                                                                            337   343               361          374

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Immunoglobulin-like beta-sandwich (7299)

Superfamily: E set domains (509)

Family: Arrestin/Vps26-like (13)

Protein domain: automated matches (4)

Cow (Bos taurus) [TaxId: 9913] (4)

1a	d3ugxa1	A:9-182
1b	d3ugxa2	A:183-386
1c	d3ugxb1	B:11-182
1d	d3ugxb2	B:183-385
1e	d3ugxc1	C:9-182
1f	d3ugxc2	C:183-386
1g	d3ugxd1	D:9-182
1h	d3ugxd2	D:183-385

(no "CATH Domain" information available for 3UGX)

(no "Pfam Domain" information available for 3UGX)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ARRS_BOVIN | P08168)

molecular function
	GO:0002046	opsin binding	Interacting selectively and non-covalently with an opsin, any of a group of hydrophobic, integral membrane glycoproteins located primarily in the disc membrane of rods or cones, involved in photoreception.
	GO:0051219	phosphoprotein binding	Interacting selectively and non-covalently with a phosphorylated protein.
biological process
	GO:0022400	regulation of rhodopsin mediated signaling pathway	Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
	GO:0050896	response to stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
	GO:0007601	visual perception	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0001917	photoreceptor inner segment	The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.
	GO:0001750	photoreceptor outer segment	The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes.

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	ARRS_BOVIN \| P08168	:	1ayr 1cf1 1y6y 3ugu 4j2q 4pxf 4zrg

Description

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Ligands, Modified Residues, Ions (5, 27)

Sites (27, 27)

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Cis Peptide Bonds (6, 6)

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