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Biol. Unit 1
Info
Asym.Unit (477 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (122 KB)
Biol.Unit 4 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VISUAL ARRESTIN
Authors
:
R. Batra-Safferling, J. Granzin
Date
:
03 Nov 11 (Deposition) - 08 Feb 12 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Arrestin Fold, Signal Termination, Gpcr, Outer Segment, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Granzin, A. Cousin, M. Weirauch, R. Schlesinger, G. Buldt, R. Batra-Safferling
Crystal Structure Of P44, A Constitutively Active Splice Variant Of Visual Arrestin.
J. Mol. Biol. V. 416 611 2012
[
close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: IMIDAZOLE (IMDa)
2b: IMIDAZOLE (IMDb)
2c: IMIDAZOLE (IMDc)
3a: POTASSIUM ION (Ka)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: PENTANEDIAL (PTDa)
5b: PENTANEDIAL (PTDb)
5c: PENTANEDIAL (PTDc)
5d: PENTANEDIAL (PTDd)
5e: PENTANEDIAL (PTDe)
5f: PENTANEDIAL (PTDf)
5g: PENTANEDIAL (PTDg)
5h: PENTANEDIAL (PTDh)
5i: PENTANEDIAL (PTDi)
5j: PENTANEDIAL (PTDj)
5k: PENTANEDIAL (PTDk)
5l: PENTANEDIAL (PTDl)
5m: PENTANEDIAL (PTDm)
5n: PENTANEDIAL (PTDn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
IMD
-1
Ligand/Ion
IMIDAZOLE
3
K
-1
Ligand/Ion
POTASSIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
PTD
8
Ligand/Ion
PENTANEDIAL
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC7 (SOFTWARE)
14: CC3 (SOFTWARE)
15: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:19 , LYS A:55 , HIS A:155 , MET A:198
BINDING SITE FOR RESIDUE PTD A 405
02
AC2
SOFTWARE
TYR A:58 , GLN A:87 , GLN C:87 , PHE C:152
BINDING SITE FOR RESIDUE PTD A 406
03
AC3
SOFTWARE
VAL A:248 , TYR A:250 , SER A:252 , PTD A:412
BINDING SITE FOR RESIDUE PTD A 407
04
AC4
SOFTWARE
THR A:258 , ALA A:261 , ASN A:286 , ASN A:287 , HOH A:430
BINDING SITE FOR RESIDUE PTD A 408
05
AC5
SOFTWARE
LYS A:14 , TYR A:25 , PHE A:377
BINDING SITE FOR RESIDUE PTD A 409
06
AC6
SOFTWARE
PRO A:127 , CYS A:128 , VAL A:130 , GLN A:178 , SER A:308 , SER A:309 , THR A:310 , ILE A:311 , ILE A:323 , HOH A:436
BINDING SITE FOR RESIDUE PTD A 410
07
AC7
SOFTWARE
TYR A:125 , VAL C:94 , GLY C:95 , ALA C:96
BINDING SITE FOR RESIDUE PTD A 411
08
AC8
SOFTWARE
LYS A:318 , LEU A:324 , PTD A:407
BINDING SITE FOR RESIDUE PTD A 412
09
AC9
SOFTWARE
SER A:199 , GLU A:231
BINDING SITE FOR RESIDUE NA A 413
10
BC1
SOFTWARE
TYR A:84 , PHE A:85 , VAL C:88 , GLN C:89 , VAL C:94
BINDING SITE FOR RESIDUE EDO A 414
11
BC2
SOFTWARE
LYS A:267 , PHE B:197 , ASP B:200
BINDING SITE FOR RESIDUE EDO A 415
12
BC6
SOFTWARE
VAL A:159 , GLN B:195 , HOH B:411 , HOH B:426 , HOH B:431
BINDING SITE FOR RESIDUE NA B 408
13
BC7
SOFTWARE
ASN A:271 , SER A:272 , SER A:273 , GLU B:350
BINDING SITE FOR RESIDUE EDO B 409
14
CC3
SOFTWARE
GLU A:160 , ASP A:162 , LYS C:150 , ILE C:164 , LYS C:166
BINDING SITE FOR RESIDUE EDO C 409
15
CC4
SOFTWARE
VAL A:88 , GLN A:89 , VAL A:94 , TYR C:84 , PHE C:85
BINDING SITE FOR RESIDUE EDO C 410
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARRESTINS (A:65-83)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARRESTINS
PS00295
Arrestins signature.
ARRS_BOVIN
65-83
1
A:65-83
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3ugxa1 (A:9-182)
1b: SCOP_d3ugxa2 (A:183-386)
1c: SCOP_d3ugxb1 (B:11-182)
1d: SCOP_d3ugxb2 (B:183-385)
1e: SCOP_d3ugxc1 (C:9-182)
1f: SCOP_d3ugxc2 (C:183-386)
1g: SCOP_d3ugxd1 (D:9-182)
1h: SCOP_d3ugxd2 (D:183-385)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Arrestin/Vps26-like
(13)
Protein domain
:
automated matches
(4)
Cow (Bos taurus) [TaxId: 9913]
(4)
1a
d3ugxa1
A:9-182
1b
d3ugxa2
A:183-386
1c
d3ugxb1
B:11-182
1d
d3ugxb2
B:183-385
1e
d3ugxc1
C:9-182
1f
d3ugxc2
C:183-386
1g
d3ugxd1
D:9-182
1h
d3ugxd2
D:183-385
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (477 KB)
Header - Asym.Unit
Biol.Unit 1 (125 KB)
Header - Biol.Unit 1
Biol.Unit 2 (118 KB)
Header - Biol.Unit 2
Biol.Unit 3 (122 KB)
Header - Biol.Unit 3
Biol.Unit 4 (116 KB)
Header - Biol.Unit 4
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