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(-) Description

Title :  CRYSTAL STRUCTURE OF ENOLASE BRADO_4202 (TARGET EFI-501651) FROM BRADYRHIZOBIUM SP. ORS278 WITH CALCIUM AND ACETATE BOUND
 
Authors :  Y. Patskovsky, J. Kim, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammond, W. D. Zencheck, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Function I (Efi)
Date :  06 Sep 11  (Deposition) - 21 Sep 11  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Keywords :  Enolase, Magnesium Binding Site, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, J. Kim, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammond, W. D. Zencheck, H. J. Imker, J. A. Gerlt, S. C. Almo
Crystal Structure Of Mandelate Racemase From Bradyrhizobium Sp. Ors278
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FAMILY PROTEIN
    Chains: A, B, C, D
    EC Number: 5.1.2.2, 5.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BRADO4202
    Organism Scientific: BRADYRHIZOBIUM SP. ORS 278
    Organism Taxid: 114615

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 21)

Asymmetric Unit (4, 21)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CA8Ligand/IonCALCIUM ION
3NI3Ligand/IonNICKEL (II) ION
4P4C6Ligand/IonO-ACETALDEHYDYL-HEXAETHYLENE GLYCOL
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3NI-1Ligand/IonNICKEL (II) ION
4P4C12Ligand/IonO-ACETALDEHYDYL-HEXAETHYLENE GLYCOL

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:196 , GLU A:222 , GLU A:248 , ACT A:362 , HOH A:1176 , HOH A:1177BINDING SITE FOR RESIDUE CA A 361
02AC2SOFTWARELYS A:167 , ASP A:196 , ASN A:198 , GLU A:248 , HIS A:298 , CA A:361 , HOH A:1176BINDING SITE FOR RESIDUE ACT A 362
03AC3SOFTWAREHIS A:64 , HOH A:1213 , HOH A:1440BINDING SITE FOR RESIDUE NI A 363
04AC4SOFTWARELEU A:127 , LEU A:282 , ASN A:283 , VAL A:310 , HOH A:441 , HOH A:610 , HOH A:1417 , LEU B:127 , LEU B:282 , ASN B:283 , VAL B:310 , HOH B:577BINDING SITE FOR RESIDUE P4C A 364
05AC5SOFTWAREARG A:237 , SER A:240 , HOH A:1247 , HOH A:1248 , ARG C:239 , HOH C:1249BINDING SITE FOR RESIDUE CA A 365
06AC6SOFTWAREASP B:196 , GLU B:222 , GLU B:248 , ACT B:362 , HOH B:1180 , HOH B:1181BINDING SITE FOR RESIDUE CA B 361
07AC7SOFTWARELYS B:167 , ASP B:196 , ASN B:198 , GLU B:248 , HIS B:298 , CA B:361 , HOH B:1038 , HOH B:1181 , HOH B:1284BINDING SITE FOR RESIDUE ACT B 362
08AC8SOFTWAREHIS B:64 , HOH B:1265 , HOH B:1266 , HOH B:1532 , HIS C:64BINDING SITE FOR RESIDUE NI B 363
09AC9SOFTWAREASP B:202 , ALA B:204 , GLU B:205 , ARG B:208 , HOH B:432 , HOH B:480 , HOH B:611 , HOH B:617 , HOH B:1432 , PRO D:135 , PRO D:189 , THR D:219 , PRO D:294 , HIS D:315 , PHE D:316 , HOH D:486BINDING SITE FOR RESIDUE P4C B 364
10BC1SOFTWAREASP A:202 , GLU A:205 , ARG A:208 , HOH A:381 , HOH A:444 , PRO B:135 , ASP B:217 , THR B:219 , PRO B:294 , HIS B:315 , PHE B:316 , HOH B:503 , HOH B:1145 , HOH B:1301 , HOH B:1437BINDING SITE FOR RESIDUE P4C B 365
11BC2SOFTWAREARG A:239 , ARG B:237 , SER B:240 , HOH B:411 , HOH B:460 , HOH B:701BINDING SITE FOR RESIDUE CA B 366
12BC3SOFTWAREASP C:196 , GLU C:222 , GLU C:248 , ACT C:362 , HOH C:1188 , HOH C:1189BINDING SITE FOR RESIDUE CA C 361
13BC4SOFTWARELYS C:167 , ASP C:196 , ASN C:198 , GLU C:248 , HIS C:298 , CA C:361 , HOH C:1189 , HOH C:1275 , HOH C:1352BINDING SITE FOR RESIDUE ACT C 362
14BC5SOFTWAREPRO A:189 , ILE A:191 , ASP A:217 , THR A:219 , HIS A:315 , PHE A:316 , HOH A:781 , ASP C:202 , ALA C:204 , GLU C:205 , ARG C:208 , HOH C:393 , HOH C:668 , HOH C:862 , HOH C:1021 , HOH C:1424BINDING SITE FOR RESIDUE P4C C 363
15BC6SOFTWAREPRO C:135 , ASP C:217 , PRO C:294 , HIS C:315 , PHE C:316 , HOH C:403 , HOH C:1059 , HOH C:1186 , HOH C:1398 , HOH C:1399 , HOH C:1401 , ASP D:202 , ALA D:204 , GLU D:205 , ARG D:208 , HOH D:399BINDING SITE FOR RESIDUE P4C C 364
16BC7SOFTWAREARG C:237 , SER C:240 , HOH C:382 , HOH C:419 , HOH C:1347 , ARG D:239BINDING SITE FOR RESIDUE CA C 365
17BC8SOFTWAREASP D:196 , GLU D:222 , GLU D:248 , ACT D:362 , HOH D:1194 , HOH D:1195BINDING SITE FOR RESIDUE CA D 361
18BC9SOFTWARELYS D:167 , ASP D:196 , ASN D:198 , GLU D:248 , HIS D:298 , CA D:361 , HOH D:870 , HOH D:1194 , HOH D:1387BINDING SITE FOR RESIDUE ACT D 362
19CC1SOFTWAREHIS D:64 , HOH D:411BINDING SITE FOR RESIDUE NI D 363
20CC2SOFTWARELEU C:127 , LEU C:282 , ASN C:283 , VAL C:310 , HOH C:500 , LEU D:127 , LEU D:282 , ASN D:283 , ALA D:285 , VAL D:310 , HOH D:395 , HOH D:474 , HOH D:1018 , HOH D:1403BINDING SITE FOR RESIDUE P4C D 364
21CC3SOFTWAREARG B:239 , ARG D:237 , SER D:240 , HOH D:685 , HOH D:1197 , HOH D:1519BINDING SITE FOR RESIDUE CA D 365

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TOY)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:342 -Pro A:343
2Gly B:342 -Pro B:343
3Gly C:342 -Pro C:343
4Gly D:342 -Pro D:343

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TOY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TOY)

(-) Exons   (0, 0)

(no "Exon" information available for 3TOY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
 aligned with A4YVM8_BRASO | A4YVM8 from UniProtKB/TrEMBL  Length:360

    Alignment length:359
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
         A4YVM8_BRASO     2 TTAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGKVTAKGPGLGLAWNESAVAKYQVT 360
               SCOP domains d3toya1 A:2-132 automated matches                                                                                                  d3toya2 A:133-360 automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeeee..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eeeeee....hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee....hhhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....eee...hhhhh.........ee...........hhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toy A   2 TTAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGKVTAKGPGLGLAWNESAVAKYQVT 360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         


Chain B from PDB  Type:PROTEIN  Length:359
 aligned with A4YVM8_BRASO | A4YVM8 from UniProtKB/TrEMBL  Length:360

    Alignment length:359
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
         A4YVM8_BRASO     2 TTAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGKVTAKGPGLGLAWNESAVAKYQVT 360
               SCOP domains d3toyb1 B:2-132 automated matches                                                                                                  d3toyb2 B:133-360 automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeeee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eeeeee........hhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee....hhhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....eee...hhhhh.........ee...........hhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toy B   2 TTAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGKVTAKGPGLGLAWNESAVAKYQVT 360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         


Chain C from PDB  Type:PROTEIN  Length:359
 aligned with A4YVM8_BRASO | A4YVM8 from UniProtKB/TrEMBL  Length:360

    Alignment length:359
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
         A4YVM8_BRASO     2 TTAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGKVTAKGPGLGLAWNESAVAKYQVT 360
               SCOP domains d3toyc1 C:2-132 automated matches                                                                                                  d3toyc2 C:133-360 automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eeeeee........hhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee....hhhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....eee...hhhhh.........ee...........hhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toy C   2 TTAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGKVTAKGPGLGLAWNESAVAKYQVT 360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         


Chain D from PDB  Type:PROTEIN  Length:359
 aligned with A4YVM8_BRASO | A4YVM8 from UniProtKB/TrEMBL  Length:360

    Alignment length:359
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351         
         A4YVM8_BRASO     2 TTAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGKVTAKGPGLGLAWNESAVAKYQVT 360
               SCOP domains d3toyd1 D:2-132 automated matches                                                                                                  d3toyd2 D:133-360 automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eeeeee........hhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee....hhhhhhhhhhhhh...ee.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh.....eee...hhhhh.........ee...........hhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3toy D   2 TTAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVEDIGRELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGKVTAKGPGLGLAWNESAVAKYQVT 360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TOY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TOY)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (A4YVM8_BRASO | A4YVM8)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0018838    mandelate racemase activity    Catalysis of the reaction: (S)-mandelate = (R)-mandelate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0018849    muconate cycloisomerase activity    Catalysis of the reaction: 2,5-dihydro-5-oxofuran-2-acetate = cis,cis-hexadienedioate.
biological process
    GO:0009063    cellular amino acid catabolic process    The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  3toy
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    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
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  A4YVM8_BRASO | A4YVM8
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  5.1.2.2
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    Pathway: KEGG | MetaCyc
  5.5.1.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
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Access by UniProt ID/Accession number
  A4YVM8_BRASO | A4YVM8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A4YVM8_BRASO | A4YVM8: 3tte

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3TOY)