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Asym. Unit
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Asym.Unit (263 KB)
Biol.Unit 1 (503 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENOLASE BRADO_4202 (TARGET EFI-501651) FROM BRADYRHIZOBIUM SP. ORS278 WITH CALCIUM AND ACETATE BOUND
Authors
:
Y. Patskovsky, J. Kim, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammond, W. D. Zencheck, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Function I (Efi)
Date
:
06 Sep 11 (Deposition) - 21 Sep 11 (Release) - 22 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (2x)
Keywords
:
Enolase, Magnesium Binding Site, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, J. Kim, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammond, W. D. Zencheck, H. J. Imker, J. A. Gerlt, S. C. Almo
Crystal Structure Of Mandelate Racemase From Bradyrhizobium Sp. Ors278
To Be Published
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
3c: NICKEL (II) ION (NIc)
4a: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Ca)
4b: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cb)
4c: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cc)
4d: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cd)
4e: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Ce)
4f: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CA
8
Ligand/Ion
CALCIUM ION
3
NI
3
Ligand/Ion
NICKEL (II) ION
4
P4C
6
Ligand/Ion
O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:196 , GLU A:222 , GLU A:248 , ACT A:362 , HOH A:1176 , HOH A:1177
BINDING SITE FOR RESIDUE CA A 361
02
AC2
SOFTWARE
LYS A:167 , ASP A:196 , ASN A:198 , GLU A:248 , HIS A:298 , CA A:361 , HOH A:1176
BINDING SITE FOR RESIDUE ACT A 362
03
AC3
SOFTWARE
HIS A:64 , HOH A:1213 , HOH A:1440
BINDING SITE FOR RESIDUE NI A 363
04
AC4
SOFTWARE
LEU A:127 , LEU A:282 , ASN A:283 , VAL A:310 , HOH A:441 , HOH A:610 , HOH A:1417 , LEU B:127 , LEU B:282 , ASN B:283 , VAL B:310 , HOH B:577
BINDING SITE FOR RESIDUE P4C A 364
05
AC5
SOFTWARE
ARG A:237 , SER A:240 , HOH A:1247 , HOH A:1248 , ARG C:239 , HOH C:1249
BINDING SITE FOR RESIDUE CA A 365
06
AC6
SOFTWARE
ASP B:196 , GLU B:222 , GLU B:248 , ACT B:362 , HOH B:1180 , HOH B:1181
BINDING SITE FOR RESIDUE CA B 361
07
AC7
SOFTWARE
LYS B:167 , ASP B:196 , ASN B:198 , GLU B:248 , HIS B:298 , CA B:361 , HOH B:1038 , HOH B:1181 , HOH B:1284
BINDING SITE FOR RESIDUE ACT B 362
08
AC8
SOFTWARE
HIS B:64 , HOH B:1265 , HOH B:1266 , HOH B:1532 , HIS C:64
BINDING SITE FOR RESIDUE NI B 363
09
AC9
SOFTWARE
ASP B:202 , ALA B:204 , GLU B:205 , ARG B:208 , HOH B:432 , HOH B:480 , HOH B:611 , HOH B:617 , HOH B:1432 , PRO D:135 , PRO D:189 , THR D:219 , PRO D:294 , HIS D:315 , PHE D:316 , HOH D:486
BINDING SITE FOR RESIDUE P4C B 364
10
BC1
SOFTWARE
ASP A:202 , GLU A:205 , ARG A:208 , HOH A:381 , HOH A:444 , PRO B:135 , ASP B:217 , THR B:219 , PRO B:294 , HIS B:315 , PHE B:316 , HOH B:503 , HOH B:1145 , HOH B:1301 , HOH B:1437
BINDING SITE FOR RESIDUE P4C B 365
11
BC2
SOFTWARE
ARG A:239 , ARG B:237 , SER B:240 , HOH B:411 , HOH B:460 , HOH B:701
BINDING SITE FOR RESIDUE CA B 366
12
BC3
SOFTWARE
ASP C:196 , GLU C:222 , GLU C:248 , ACT C:362 , HOH C:1188 , HOH C:1189
BINDING SITE FOR RESIDUE CA C 361
13
BC4
SOFTWARE
LYS C:167 , ASP C:196 , ASN C:198 , GLU C:248 , HIS C:298 , CA C:361 , HOH C:1189 , HOH C:1275 , HOH C:1352
BINDING SITE FOR RESIDUE ACT C 362
14
BC5
SOFTWARE
PRO A:189 , ILE A:191 , ASP A:217 , THR A:219 , HIS A:315 , PHE A:316 , HOH A:781 , ASP C:202 , ALA C:204 , GLU C:205 , ARG C:208 , HOH C:393 , HOH C:668 , HOH C:862 , HOH C:1021 , HOH C:1424
BINDING SITE FOR RESIDUE P4C C 363
15
BC6
SOFTWARE
PRO C:135 , ASP C:217 , PRO C:294 , HIS C:315 , PHE C:316 , HOH C:403 , HOH C:1059 , HOH C:1186 , HOH C:1398 , HOH C:1399 , HOH C:1401 , ASP D:202 , ALA D:204 , GLU D:205 , ARG D:208 , HOH D:399
BINDING SITE FOR RESIDUE P4C C 364
16
BC7
SOFTWARE
ARG C:237 , SER C:240 , HOH C:382 , HOH C:419 , HOH C:1347 , ARG D:239
BINDING SITE FOR RESIDUE CA C 365
17
BC8
SOFTWARE
ASP D:196 , GLU D:222 , GLU D:248 , ACT D:362 , HOH D:1194 , HOH D:1195
BINDING SITE FOR RESIDUE CA D 361
18
BC9
SOFTWARE
LYS D:167 , ASP D:196 , ASN D:198 , GLU D:248 , HIS D:298 , CA D:361 , HOH D:870 , HOH D:1194 , HOH D:1387
BINDING SITE FOR RESIDUE ACT D 362
19
CC1
SOFTWARE
HIS D:64 , HOH D:411
BINDING SITE FOR RESIDUE NI D 363
20
CC2
SOFTWARE
LEU C:127 , LEU C:282 , ASN C:283 , VAL C:310 , HOH C:500 , LEU D:127 , LEU D:282 , ASN D:283 , ALA D:285 , VAL D:310 , HOH D:395 , HOH D:474 , HOH D:1018 , HOH D:1403
BINDING SITE FOR RESIDUE P4C D 364
21
CC3
SOFTWARE
ARG B:239 , ARG D:237 , SER D:240 , HOH D:685 , HOH D:1197 , HOH D:1519
BINDING SITE FOR RESIDUE CA D 365
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3toya1 (A:2-132)
1b: SCOP_d3toyb1 (B:2-132)
1c: SCOP_d3toyc1 (C:2-132)
1d: SCOP_d3toyd1 (D:2-132)
2a: SCOP_d3toya2 (A:133-360)
2b: SCOP_d3toyb2 (B:133-360)
2c: SCOP_d3toyc2 (C:133-360)
2d: SCOP_d3toyd2 (D:133-360)
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Classes
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Bradyrhizobium sp. [TaxId: 114615]
(2)
1a
d3toya1
A:2-132
1b
d3toyb1
B:2-132
1c
d3toyc1
C:2-132
1d
d3toyd1
D:2-132
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Bradyrhizobium sp. [TaxId: 114615]
(2)
2a
d3toya2
A:133-360
2b
d3toyb2
B:133-360
2c
d3toyc2
C:133-360
2d
d3toyd2
D:133-360
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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