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(-) Description

Title :  CRYSTAL STRUCTURE OF DUAL-SPECIFIC A-KINASE ANCHORING PROTEIN 2 IN COMPLEX WITH CAMP-DEPENDENT PROTEIN KINASE A TYPE II ALPHA AND PDZK1
 
Authors :  G. N. Sarma, R. H. Phan, B. Sankaran, S. S. Taylor
Date :  31 Aug 11  (Deposition) - 05 Sep 12  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,L
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,L  (2x)
Keywords :  Alpha Helical Bundle, Pdz Fold, Anchoring Protein, Pka, Pdz Proteins, Membrane, Transport Protein-Signaling Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. N. Sarma, R. H. Phan, B. Sankaran, S. S. Taylor
Differential Mode Of D-Akap2 To Pka Isoforms: Insights From D-Akap2 Pka Rii Pdzk1 Ternary Complex Structure
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NA(+)/H(+) EXCHANGE REGULATORY COFACTOR NHE-RF3
    Chains: A, E, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 375-459
    Gene: PDZK1, CAP70, NHERF3, PDZD1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NHERF-3, CFTR-ASSOCIATED PROTEIN OF 70 KDA, NA(+)/H(+) EXCHANGER REGULATORY FACTOR 3, NA/PI COTRANSPORTER C-TERMINAL- ASSOCIATED PROTEIN 1, NAPI-CAP1, PDZ DOMAIN-CONTAINING PROTEIN 1, SODIUM-HYDROGEN EXCHANGER REGULATORY FACTOR 3
 
Molecule 2 - CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY SUBUNIT
    Chains: B, C, F, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: DIMERIZATION/DOCKING DOMAIN (D/D), UNP RESIDUES 3-44
    Gene: PRKAR2A
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
 
Molecule 3 - A-KINASE ANCHOR PROTEIN 10, MITOCHONDRIAL
    Chains: D, H, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: A-KINASE BINDING DOMAIN (AKB), UNP RESIDUES 623-662
    Gene: AKAP10
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AKAP-10, DUAL SPECIFICITY A KINASE-ANCHORING PROTEIN 2, D- AKAP-2, PROTEIN KINASE A-ANCHORING PROTEIN 10, PRKA10

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIL
Biological Unit 1 (2x): ABCDEFGHIL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3TMH)

(-) Sites  (0, 0)

(no "Site" information available for 3TMH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TMH)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gln D:654 -Pro D:655
2Gln H:654 -Pro H:655
3Gln L:654 -Pro L:655

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 3)

Asymmetric Unit (1, 3)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_024608I646VAKA10_HUMANPolymorphism203462D/H/LV646V
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_024608I646VAKA10_HUMANPolymorphism203462D/H/LV646V
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 3)

Asymmetric Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.NHRF3_HUMAN9-90
134-215
243-323
378-458
 
 		  3-
-
-
A:378-456
E:378-456
I:378-456
Biological Unit 1 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.NHRF3_HUMAN9-90
134-215
243-323
378-458
 
 		  6-
-
-
A:378-456
E:378-456
I:378-456

(-) Exons   (2, 6)

Asymmetric Unit (2, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3ENST000003447703ENSE00001411267chr1:145743263-14574333371NHRF3_HUMAN-00--
1.4bENST000003447704bENSE00001372163chr1:145747042-145747253212NHRF3_HUMAN1-70700--
1.5ENST000003447705ENSE00001759427chr1:145748338-145748587250NHRF3_HUMAN71-154840--
1.6ENST000003447706ENSE00001710717chr1:145752428-145752564137NHRF3_HUMAN154-199460--
1.7ENST000003447707ENSE00002188888chr1:145753955-145754150196NHRF3_HUMAN200-265660--
1.8ENST000003447708ENSE00001787521chr1:145756417-145756613197NHRF3_HUMAN265-330660--
1.9aENST000003447709aENSE00001784849chr1:145761178-145761402225NHRF3_HUMAN331-405753A:375-405
E:375-405
I:375-405		31
31
31
1.10aENST0000034477010aENSE00001706980chr1:145762039-145762329291NHRF3_HUMAN406-502973A:406-456
E:406-456
I:406-456		51
51
51
1.12dENST0000034477012dENSE00001365469chr1:145763570-145764074505NHRF3_HUMAN503-519170--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:82
 aligned with NHRF3_HUMAN | Q5T2W1 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:82
                                   384       394       404       414       424       434       444       454  
          NHRF3_HUMAN   375 KPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCG 456
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........eeeee.....eee......hhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PDZ  PDB: A:378-456 UniProt: 378-458                                            PROSITE
               Transcript 1 Exon 1.9a  PDB: A:375-405      Exon 1.10a  PDB: A:406-456 UniProt: 406-502         Transcript 1
                 3tmh A 375 KPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCG 456
                                   384       394       404       414       424       434       444       454  


Chain B from PDB  Type:PROTEIN  Length:36
 aligned with KAP2_RAT | P12368 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:36
                                    18        28        38      
             KAP2_RAT     9 GLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR  44
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 3tmh B   8 GLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR  43
                                    17        27        37      


Chain C from PDB  Type:PROTEIN  Length:39
 aligned with KAP2_RAT | P12368 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:39
                                    13        23        33         
             KAP2_RAT     4 IQIPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLRE  42
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                 3tmh C   3 IQIPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLRE  41
                                    12        22        32         


Chain D from PDB  Type:PROTEIN  Length:28
 aligned with AKA10_HUMAN | O43572 from UniProtKB/Swiss-Prot  Length:662

    Alignment length:28
                                   644       654        
          AKA10_HUMAN   635 AWKIAKMIVSDIMQQAQYDQPLEKSTKL 662
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) -----------V---------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 3tmh D 635 AWKIAKMIVSDVMQQAQYDQPLEKSTKL 662
                                   644       654        


Chain E from PDB  Type:PROTEIN  Length:82
 aligned with NHRF3_HUMAN | Q5T2W1 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:82
                                   384       394       404       414       424       434       444       454  
          NHRF3_HUMAN   375 KPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCG 456
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........eeeee.....eee......hhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PDZ  PDB: E:378-456 UniProt: 378-458                                            PROSITE
               Transcript 1 Exon 1.9a  PDB: E:375-405      Exon 1.10a  PDB: E:406-456 UniProt: 406-502         Transcript 1
                 3tmh E 375 KPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCG 456
                                   384       394       404       414       424       434       444       454  


Chain F from PDB  Type:PROTEIN  Length:39
 aligned with KAP2_RAT | P12368 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:39
                                    15        25        35         
             KAP2_RAT     6 IPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR  44
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                 3tmh F   5 IPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR  43
                                    14        24        34         


Chain G from PDB  Type:PROTEIN  Length:33
 aligned with KAP2_RAT | P12368 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:33
                                    17        27        37   
             KAP2_RAT     8 PGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRL  40
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 3tmh G   7 PGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRL  39
                                    16        26        36   


Chain H from PDB  Type:PROTEIN  Length:23
 aligned with AKA10_HUMAN | O43572 from UniProtKB/Swiss-Prot  Length:662

    Alignment length:23
                                   649       659   
          AKA10_HUMAN   640 KMIVSDIMQQAQYDQPLEKSTKL 662
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) ------V---------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 3tmh H 640 KMIVSDVMQQAQYDQPLEKSTKL 662
                                   649       659   


Chain I from PDB  Type:PROTEIN  Length:82
 aligned with NHRF3_HUMAN | Q5T2W1 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:82
                                   384       394       404       414       424       434       444       454  
          NHRF3_HUMAN   375 KPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCG 456
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........eeeee.....eee......hhhhhh......eeeee..ee....hhhhhhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---PDZ  PDB: I:378-456 UniProt: 378-458                                            PROSITE
               Transcript 1 Exon 1.9a  PDB: I:375-405      Exon 1.10a  PDB: I:406-456 UniProt: 406-502         Transcript 1
                 3tmh I 375 KPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCG 456
                                   384       394       404       414       424       434       444       454  


Chain L from PDB  Type:PROTEIN  Length:27
 aligned with AKA10_HUMAN | O43572 from UniProtKB/Swiss-Prot  Length:662

    Alignment length:27
                                   645       655       
          AKA10_HUMAN   636 WKIAKMIVSDIMQQAQYDQPLEKSTKL 662
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------V---------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 3tmh L 636 WKIAKMIVSDVMQQAQYDQPLEKSTKL 662
                                   645       655
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TMH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TMH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TMH)

(-) Gene Ontology  (40, 46)

Asymmetric Unit(hide GO term definitions)
Chain A,E,I   (NHRF3_HUMAN | Q5T2W1)
molecular function
    GO:0030165    PDZ domain binding    Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005124    scavenger receptor binding    Interacting selectively and non-covalently with scavenger receptors, a family of proteins that are expressed on myeloid cells and are involved in the uptake of effete cellular components and foreign particles.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0015879    carnitine transport    The directed movement of carnitine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carnitine is a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0015893    drug transport    The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0034767    positive regulation of ion transmembrane transport    Any process that activates or increases the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other.
    GO:0090314    positive regulation of protein targeting to membrane    Any process that increases the frequency, rate or extent of the process of directing proteins towards a membrane, usually using signals contained within the protein.
    GO:0044070    regulation of anion transport    Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016324    apical plasma membrane    The region of the plasma membrane located at the apical end of the cell.
    GO:0031526    brush border membrane    The portion of the plasma membrane surrounding the brush border.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0045121    membrane raft    Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
    GO:0031528    microvillus membrane    The portion of the plasma membrane surrounding a microvillus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,C,F,G   (KAP2_RAT | P12368)
molecular function
    GO:0030552    cAMP binding    Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).
    GO:0008603    cAMP-dependent protein kinase regulator activity    Modulation of the activity of the enzyme cAMP-dependent protein kinase.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0034236    protein kinase A catalytic subunit binding    Interacting selectively and non-covalently with one or both of the catalytic subunits of protein kinase A.
    GO:0036094    small molecule binding    Interacting selectively and non-covalently with a small molecule, any low molecular weight, monomeric, non-encoded molecule.
biological process
    GO:0051291    protein heterooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers that are not all identical. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0045859    regulation of protein kinase activity    Any process that modulates the frequency, rate or extent of protein kinase activity.
    GO:0001932    regulation of protein phosphorylation    Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein.
    GO:0097338    response to clozapine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a clozapine stimulus.
cellular component
    GO:0030315    T-tubule    Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane.
    GO:0005952    cAMP-dependent protein kinase complex    An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Chain D,H,L   (AKA10_HUMAN | O43572)
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0008104    protein localization    Any process in which a protein is transported to, or maintained in, a specific location.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  Cis Peptide Bonds
    Gln D:654 - Pro D:655   [ RasMol ]  
    Gln H:654 - Pro H:655   [ RasMol ]  
    Gln L:654 - Pro L:655   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AKA10_HUMAN | O43572: 3im4
        KAP2_RAT | P12368: 2drn 2h9r 2hwn 2izy
        NHRF3_HUMAN | Q5T2W1: 2eei 2eej 2vsp 4q2p

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3TMH)