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Description

Title :   MUTATION OF SFALR

Authors :   M. Dong, B. J. Bahnson

Date :   25 Aug 11 (Deposition) - 29 Aug 12 (Release) - 29 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.61

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Flavin, Flavoprotein, Sulfhydryl Oxidase, Fad, Gfer, Alr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Dong, B. J. Bahnson
Sfalr Mutation
To Be Published
PubMed: search

Compounds

Molecule 1 - FAD-LINKED SULFHYDRYL OXIDASE ALR
	Chains	:	A
	EC Number	:	1.8.3.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	GFER, ALR, HERV1, HPO
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	AUGMENTER OF LIVER REGENERATION, HERV1, HEPATOPOIETIN

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 1)

Asymmetric Unit (1, 1)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Sites (1, 1)

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:1 , HOH A:12 , HOH A:14 , HOH A:25 , HOH A:36 , HOH A:40 , HOH A:60 , HOH A:68 , ARG A:99 , GLY A:103 , ARG A:104 , SER A:106 , TRP A:107 , HIS A:111 , TYR A:140 , CYS A:145 , CYS A:171 , HIS A:174 , ASN A:175 , VAL A:177 , ASN A:178 , LYS A:180 , LEU A:181 , LYS A:183 , PHE A:186 , ARG A:194 , TRP A:195 , HOH A:223 , HOH A:251 , HOH A:270 , HOH A:284 , HOH A:294	BINDING SITE FOR RESIDUE FAD A 300

SS Bonds (2, 2)

Asymmetric Unit

No.	Residues
1	A:95	-	A:204
2	A:171	-	A:188

Cis Peptide Bonds (0, 0)

(no "Cis Peptide Bond" information available for 3TK0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 2)

Asymmetric Unit (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_061994	F	166	L	ALR_HUMAN	Polymorphism	36041021	A	F	166	L
2	UniProt	VAR_063435	R	194	H	ALR_HUMAN	Disease (MPMCHD)	121908192	A	R	194	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_061994	F	166	L	ALR_HUMAN	Polymorphism	36041021	A	F	166	L
2	UniProt	VAR_063435	R	194	H	ALR_HUMAN	Disease (MPMCHD)	121908192	A	R	194	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 1)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ERV_ALR	PS51324	ERV/ALR sulfhydryl oxidase domain profile.	ALR_HUMAN	95-195	1	A:95-195

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ERV_ALR	PS51324	ERV/ALR sulfhydryl oxidase domain profile.	ALR_HUMAN	95-195	2	A:95-195

Exons (0, 0)

(no "Exon" information available for 3TK0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:126
 aligned with ALR_HUMAN | P55789 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:126
                                    89        99       109       119       129       139       149       159       169       179       189       199      
            ALR_HUMAN    80 WMRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRLCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 205
               SCOP domains d3tk0a_ A: Augmenter of liver regeneration                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhh........hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------L---------------------------H----------- SAPs(SNPs)
                    PROSITE ---------------ERV_ALR  PDB: A:95-195 UniProt: 95-195                                                               ---------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3tk0 A  80 SMRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGSCD 205
                                    89        99       109       119       129       139       149       159       169       179       189       199

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Four-helical up-and-down bundle (308)

Superfamily: FAD-dependent thiol oxidase (15)

Family: FAD-dependent thiol oxidase (10)

Protein domain: Augmenter of liver regeneration (7)

Human (Homo sapiens) [TaxId: 9606] (6)

d3tk0a_

CATH Domains (0, 0)

(no "CATH Domain" information available for 3TK0)

Pfam Domains (0, 0)

(no "Pfam Domain" information available for 3TK0)

Gene Ontology (11, 11)

Asymmetric Unit(hide GO term definitions)

Chain A (ALR_HUMAN | P55789)

molecular function
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0008083	growth factor activity	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0015035	protein disulfide oxidoreductase activity	Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
	GO:0016972	thiol oxidase activity	Catalysis of the reaction: 4 R'C(R)SH + O2 = 2 R'C(R)S-S(R)CR' + 2 H2O.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005758	mitochondrial intermembrane space	The region between the inner and outer lipid bilayers of the mitochondrial envelope.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
	ALR_HUMAN \| P55789	:	3mbg 3o55 3u2l 3u2m 3u5s 4ldk

Related Entries Specified in the PDB File

3mbg