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(-) Description

Title :  CRYSTAL STRUCTURE OF OMPA-LIKE DOMAIN FROM ACINETOBACTER BAUMANNII IN COMPLEX WITH L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA
 
Authors :  J. S. Park, W. C. Lee, J. H. Song, H. Y. Kim
Date :  10 Aug 11  (Deposition) - 26 Oct 11  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,I,J  (1x)
Biol. Unit 2:  C,D,K,L  (1x)
Biol. Unit 3:  E,F,M,N  (1x)
Biol. Unit 4:  G,H,O,P  (1x)
Keywords :  Ompa-Like Fold, Cell-Wall Attachment, Peptidoglycan-Binding, Membrane Protein-Peptide Binding Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Park, W. C. Lee, K. J. Yeo, K. S. Ryu, M. Kumarasiri, D. Hesek, M. Lee S. Mobashery, J. H. Song, S. I. Kim, J. C. Lee, C. Cheong, Y. H. Jeon, H. Y. Kim
Mechanism Of Anchoring Of Ompa Protein To The Cell Wall Peptidoglycan Of The Gram-Negative Bacterial Outer Membrane
Faseb J. V. 26 219 2012
PubMed-ID: 21965596  |  Reference-DOI: 10.1096/FJ.11-188425

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN OMP38
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL DOMAIN
    Gene: OMP38
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 470
    Synonym: ABOMPA, OUTER MEMBRANE PROTEIN OMPA, OUTER MEMBRANE PROTEIN OMPAB
 
Molecule 2 - PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)
    Chains: I, J, K, L, M, N, O, P
    Engineered: YES
    Other Details: SYNTHETIC PEPTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): AB      IJ      
Biological Unit 2 (1x):   CD      KL    
Biological Unit 3 (1x):     EF      MN  
Biological Unit 4 (1x):       GH      OP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 38)

Asymmetric Unit (4, 38)
No.NameCountTypeFull Name
1API8Mod. Amino Acid2,6-DIAMINOPIMELIC ACID
2CL6Ligand/IonCHLORIDE ION
3DAL16Mod. Amino AcidD-ALANINE
4FGA8Mod. Amino AcidGAMMA-D-GLUTAMIC ACID
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1API2Mod. Amino Acid2,6-DIAMINOPIMELIC ACID
2CL-1Ligand/IonCHLORIDE ION
3DAL4Mod. Amino AcidD-ALANINE
4FGA2Mod. Amino AcidGAMMA-D-GLUTAMIC ACID
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1API2Mod. Amino Acid2,6-DIAMINOPIMELIC ACID
2CL-1Ligand/IonCHLORIDE ION
3DAL4Mod. Amino AcidD-ALANINE
4FGA2Mod. Amino AcidGAMMA-D-GLUTAMIC ACID
Biological Unit 3 (3, 8)
No.NameCountTypeFull Name
1API2Mod. Amino Acid2,6-DIAMINOPIMELIC ACID
2CL-1Ligand/IonCHLORIDE ION
3DAL4Mod. Amino AcidD-ALANINE
4FGA2Mod. Amino AcidGAMMA-D-GLUTAMIC ACID
Biological Unit 4 (3, 8)
No.NameCountTypeFull Name
1API2Mod. Amino Acid2,6-DIAMINOPIMELIC ACID
2CL-1Ligand/IonCHLORIDE ION
3DAL4Mod. Amino AcidD-ALANINE
4FGA2Mod. Amino AcidGAMMA-D-GLUTAMIC ACID

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET C:327BINDING SITE FOR RESIDUE CL C 3
2AC2SOFTWAREHOH A:65 , THR A:236 , ASN A:237 , THR A:270 , ASP A:271 , THR A:273 , GLY A:274 , PRO A:275 , ASN A:279 , ARG A:286 , ARG A:325 , ARG A:329 , HOH A:376 , HOH I:752BINDING SITE FOR CHAIN I OF PEPTIDE(L-ALA-GAMMA- D-GLU-M-DAP-D-ALA-D-ALA)
3AC3SOFTWARETHR B:236 , ASN B:237 , THR B:270 , ASP B:271 , THR B:273 , GLY B:274 , PRO B:275 , LEU B:278 , ASN B:279 , LEU B:282 , ARG B:286 , ARG B:325 , ARG B:329 , HOH J:358 , HOH J:412 , HOH J:510 , HOH J:563BINDING SITE FOR CHAIN J OF PEPTIDE(L-ALA-GAMMA- D-GLU-M-DAP-D-ALA-D-ALA)
4AC4SOFTWARETHR C:236 , ASN C:237 , THR C:270 , ASP C:271 , THR C:273 , GLY C:274 , PRO C:275 , LEU C:278 , ASN C:279 , LEU C:282 , ARG C:286 , ARG C:325 , ARG C:329 , HOH C:386 , HOH C:396 , HOH K:355 , HOH K:366 , HOH K:367BINDING SITE FOR CHAIN K OF PEPTIDE(L-ALA-GAMMA- D-GLU-M-DAP-D-ALA-D-ALA)
5AC5SOFTWARETHR D:236 , ASN D:237 , THR D:270 , ASP D:271 , THR D:273 , GLY D:274 , PRO D:275 , LEU D:278 , ASN D:279 , LEU D:282 , ARG D:286 , ARG D:325 , ARG D:329 , HOH D:406 , HOH D:407 , HOH L:360 , HOH L:448BINDING SITE FOR CHAIN L OF PEPTIDE(L-ALA-GAMMA- D-GLU-M-DAP-D-ALA-D-ALA)
6AC6SOFTWARETHR E:236 , ASN E:237 , THR E:270 , ASP E:271 , THR E:273 , GLY E:274 , PRO E:275 , ASN E:279 , LEU E:282 , ARG E:286 , ARG E:325 , ARG E:329 , HOH E:381 , HOH M:343 , HOH M:345BINDING SITE FOR CHAIN M OF PEPTIDE(L-ALA-GAMMA- D-GLU-M-DAP-D-ALA-D-ALA)
7AC7SOFTWARETHR F:236 , ASN F:237 , THR F:270 , ASP F:271 , THR F:273 , GLY F:274 , PRO F:275 , LEU F:278 , ASN F:279 , LEU F:282 , ARG F:286 , ARG F:325 , ARG F:329 , HOH F:354 , HOH N:313 , HOH N:356 , HOH N:400BINDING SITE FOR CHAIN N OF PEPTIDE(L-ALA-GAMMA- D-GLU-M-DAP-D-ALA-D-ALA)
8AC8SOFTWARETHR G:236 , ASN G:237 , THR G:270 , ASP G:271 , THR G:273 , GLY G:274 , PRO G:275 , LEU G:278 , ASN G:279 , LEU G:282 , ARG G:286 , ARG G:325 , ARG G:329 , HOH G:353 , HOH G:368 , HOH G:840 , HOH G:841 , HOH O:359 , HOH O:431BINDING SITE FOR CHAIN O OF PEPTIDE(L-ALA-GAMMA- D-GLU-M-DAP-D-ALA-D-ALA)
9AC9SOFTWARETHR H:236 , ASN H:237 , THR H:270 , ASP H:271 , THR H:273 , GLY H:274 , PRO H:275 , LEU H:278 , ASN H:279 , LEU H:282 , ARG H:286 , ARG H:325 , ARG H:329 , HOH H:421 , HOH H:422 , HOH H:859 , HOH P:853BINDING SITE FOR CHAIN P OF PEPTIDE(L-ALA-GAMMA- D-GLU-M-DAP-D-ALA-D-ALA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TD5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TD5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TD5)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPA_2PS51123 OmpA-like domain profile.OMP38_ACIBA221-339
 
 
 
 
 
 
 		  8A:221-339
B:221-339
C:221-339
D:221-339
E:221-339
F:221-339
G:221-339
H:221-339
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPA_2PS51123 OmpA-like domain profile.OMP38_ACIBA221-339
 
 
 
 
 
 
 		  2A:221-339
B:221-339
-
-
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPA_2PS51123 OmpA-like domain profile.OMP38_ACIBA221-339
 
 
 
 
 
 
 		  2-
-
C:221-339
D:221-339
-
-
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPA_2PS51123 OmpA-like domain profile.OMP38_ACIBA221-339
 
 
 
 
 
 
 		  2-
-
-
-
E:221-339
F:221-339
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPA_2PS51123 OmpA-like domain profile.OMP38_ACIBA221-339
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:221-339
H:221-339

(-) Exons   (0, 0)

(no "Exon" information available for 3TD5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with OMP38_ACIBA | Q6RYW5 from UniProtKB/Swiss-Prot  Length:356

    Alignment length:119
                                   230       240       250       260       270       280       290       300       310       320       330         
          OMP38_ACIBA   221 ELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee........hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeee...........hhhhhhhhheeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE OMPA_2  PDB: A:221-339 UniProt: 221-339                                                                                 PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 3td5 A 221 ELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
                                   230       240       250       260       270       280       290       300       310       320       330         


Chain B from PDB  Type:PROTEIN  Length:121
 aligned with OMP38_ACIBA | Q6RYW5 from UniProtKB/Swiss-Prot  Length:356

    Alignment length:121
                                   228       238       248       258       268       278       288       298       308       318       328       338 
          OMP38_ACIBA   219 PQELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee........hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeee...........hhhhhhhhheeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --OMPA_2  PDB: B:221-339 UniProt: 221-339                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3td5 B 219 HMELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
                                   228       238       248       258       268       278       288       298       308       318       328       338 


Chain C from PDB  Type:PROTEIN  Length:120
 aligned with OMP38_ACIBA | Q6RYW5 from UniProtKB/Swiss-Prot  Length:356

    Alignment length:120
                                   229       239       249       259       269       279       289       299       309       319       329       339
          OMP38_ACIBA   220 QELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeee........hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeee...........hhhhhhhhheeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPA_2  PDB: C:221-339 UniProt: 221-339                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3td5 C 220 MELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
                                   229       239       249       259       269       279       289       299       309       319       329       339


Chain D from PDB  Type:PROTEIN  Length:120
 aligned with OMP38_ACIBA | Q6RYW5 from UniProtKB/Swiss-Prot  Length:356

    Alignment length:120
                                   229       239       249       259       269       279       289       299       309       319       329       339
          OMP38_ACIBA   220 QELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeee........hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeee...........hhhhhhhhheeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPA_2  PDB: D:221-339 UniProt: 221-339                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3td5 D 220 MELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
                                   229       239       249       259       269       279       289       299       309       319       329       339


Chain E from PDB  Type:PROTEIN  Length:121
 aligned with OMP38_ACIBA | Q6RYW5 from UniProtKB/Swiss-Prot  Length:356

    Alignment length:121
                                   228       238       248       258       268       278       288       298       308       318       328       338 
          OMP38_ACIBA   219 PQELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee........hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeee...........hhhhhhhhheeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --OMPA_2  PDB: E:221-339 UniProt: 221-339                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3td5 E 219 HMELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
                                   228       238       248       258       268       278       288       298       308       318       328       338 


Chain F from PDB  Type:PROTEIN  Length:121
 aligned with OMP38_ACIBA | Q6RYW5 from UniProtKB/Swiss-Prot  Length:356

    Alignment length:121
                                   228       238       248       258       268       278       288       298       308       318       328       338 
          OMP38_ACIBA   219 PQELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee........hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeee...........hhhhhhhhheeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --OMPA_2  PDB: F:221-339 UniProt: 221-339                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3td5 F 219 HMELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
                                   228       238       248       258       268       278       288       298       308       318       328       338 


Chain G from PDB  Type:PROTEIN  Length:120
 aligned with OMP38_ACIBA | Q6RYW5 from UniProtKB/Swiss-Prot  Length:356

    Alignment length:120
                                   229       239       249       259       269       279       289       299       309       319       329       339
          OMP38_ACIBA   220 QELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeee........hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeee...........hhhhhhhhheeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPA_2  PDB: G:221-339 UniProt: 221-339                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3td5 G 220 MELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
                                   229       239       249       259       269       279       289       299       309       319       329       339


Chain H from PDB  Type:PROTEIN  Length:120
 aligned with OMP38_ACIBA | Q6RYW5 from UniProtKB/Swiss-Prot  Length:356

    Alignment length:120
                                   229       239       249       259       269       279       289       299       309       319       329       339
          OMP38_ACIBA   220 QELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeee........hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeee...........hhhhhhhhheeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -OMPA_2  PDB: H:221-339 UniProt: 221-339                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3td5 H 220 MELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRVFATITGSR 339
                                   229       239       249       259       269       279       289       299       309       319       329       339


Chain I from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3td5 I 401 Axkxx 405
                             ||||
                           402-FGA
                            403-API
                             404-DAL
                              405-DAL


Chain J from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3td5 J 401 Axkxx 405
                             ||||
                             ||||
                           402-FGA
                            403-API
                             404-DAL
                              405-DAL


Chain K from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3td5 K 401 Axkxx 405
                             ||||
                             ||||
                           402-FGA
                            403-API
                             404-DAL
                              405-DAL


Chain L from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3td5 L 401 Axkxx 405
                             ||||
                             ||||
                           402-FGA
                            403-API
                             404-DAL
                              405-DAL


Chain M from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3td5 M 401 Axkxx 405
                             ||||
                             ||||
                           402-FGA
                            403-API
                             404-DAL
                              405-DAL


Chain N from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3td5 N 401 Axkxx 405
                             ||||
                             ||||
                           402-FGA
                            403-API
                             404-DAL
                              405-DAL


Chain O from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3td5 O 401 Axkxx 405
                             ||||
                             ||||
                           402-FGA
                            403-API
                             404-DAL
                              405-DAL


Chain P from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3td5 P 401 Axkxx 405
                             ||||
                             ||||
                           402-FGA
                            403-API
                             404-DAL
                              405-DAL
   Legend:   → Mismatch (orange background)
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TD5)

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(no "Pfam Domain" information available for 3TD5)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (OMP38_ACIBA | Q6RYW5)
molecular function
    GO:0015288    porin activity    Catalysis of the transfer of substances, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
biological process
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0046930    pore complex    Any small opening in a membrane that allows the passage of gases and/or liquids.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OMP38_ACIBA | Q6RYW5: 3td3 3td4 4g4y 4g4z 4g88

(-) Related Entries Specified in the PDB File

3td3 3td4