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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF OMPA-LIKE DOMAIN FROM ACINETOBACTER BAU COMPLEX WITH L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA
Keywords OMPA-LIKE FOLD, CELL-WALL ATTACHMENT, PEPTIDOGLYCAN-BINDING, PROTEIN-PEPTIDE BINDING PROTEIN COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3TD5     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   OUTER MEMBRANE PROTEIN OMP38  A 119 946 0
2  Protein   OUTER MEMBRANE PROTEIN OMP38  B 121 964 0
3  Protein   OUTER MEMBRANE PROTEIN OMP38  C 120 954 0
4  Protein   OUTER MEMBRANE PROTEIN OMP38  D 120 954 0
5  Protein   OUTER MEMBRANE PROTEIN OMP38  E 121 964 0
6  Protein   OUTER MEMBRANE PROTEIN OMP38  F 121 964 0
7  Protein   OUTER MEMBRANE PROTEIN OMP38  G 120 954 0
8  Protein   OUTER MEMBRANE PROTEIN OMP38  H 120 954 0
9  Protein   PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)  I 5 5 32
10  Protein   PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)  J 5 5 32
11  Protein   PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)  K 5 5 32
12  Protein   PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)  L 5 5 32
13  Protein   PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)  M 5 5 32
14  Protein   PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)  N 5 5 32
15  Protein   PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)  O 5 5 32
16  Protein   PEPTIDE(L-ALA-GAMMA-D-GLU-M-DAP-D-ALA-D-ALA)  P 5 5 32
17  Ligand   OUTER MEMBRANE PROTEIN OMP38  A 1 0 1
18  Ligand   OUTER MEMBRANE PROTEIN OMP38  B 1 0 1
19  Ligand   OUTER MEMBRANE PROTEIN OMP38  C 1 0 1
20  Ligand   OUTER MEMBRANE PROTEIN OMP38  E 1 0 1
21  Ligand   OUTER MEMBRANE PROTEIN OMP38  F 1 0 1
22  Ligand   OUTER MEMBRANE PROTEIN OMP38  G 1 0 1
23 Water     885 0 885
total       1893 7694 1147
Proteins
Unit 1 GLU221 LEU222 THR223 GLU224 ASP225 LEU226 ASN227 MET228 GLU229 LEU230 ARG231 VAL232 PHE233 PHE234 ASP235 THR236 ASN237 LYS238 SER239 ASN240 ILE241 LYS242 ASP243 GLN244 TYR245 LYS246 PRO247 GLU248 ILE249 ALA250 LYS251 VAL252 ALA253 GLU254 LYS255 LEU256 SER257 GLU258 TYR259 PRO260 ASN261 ALA262 THR263 ALA264 ARG265 ILE266 GLU267 GLY268 HIS269 THR270 ASP271 ASN272 THR273 GLY274 PRO275 ARG276 LYS277 LEU278 ASN279 GLU280 ARG281 LEU282 SER283 LEU284 ALA285 ARG286 ALA287 ASN288 SER289 VAL290 LYS291 SER292 ALA293 LEU294 VAL295 ASN296 GLU297 TYR298 ASN299 VAL300 ASP301 ALA302 SER303 ARG304 LEU305 SER306 THR307 GLN308 GLY309 PHE310 ALA311 TRP312 ASP313 GLN314 PRO315 ILE316 ALA317 ASP318 ASN319 LYS320 THR321 LYS322 GLU323 GLY324 ARG325 ALA326 MET327 ASN328 ARG329 ARG330 VAL331 PHE332 ALA333 THR334 ILE335 THR336 GLY337 SER338 ARG339
Unit 2 HIS219 MET220 GLU221 LEU222 THR223 GLU224 ASP225 LEU226 ASN227 MET228 GLU229 LEU230 ARG231 VAL232 PHE233 PHE234 ASP235 THR236 ASN237 LYS238 SER239 ASN240 ILE241 LYS242 ASP243 GLN244 TYR245 LYS246 PRO247 GLU248 ILE249 ALA250 LYS251 VAL252 ALA253 GLU254 LYS255 LEU256 SER257 GLU258 TYR259 PRO260 ASN261 ALA262 THR263 ALA264 ARG265 ILE266 GLU267 GLY268 HIS269 THR270 ASP271 ASN272 THR273 GLY274 PRO275 ARG276 LYS277 LEU278 ASN279 GLU280 ARG281 LEU282 SER283 LEU284 ALA285 ARG286 ALA287 ASN288 SER289 VAL290 LYS291 SER292 ALA293 LEU294 VAL295 ASN296 GLU297 TYR298 ASN299 VAL300 ASP301 ALA302 SER303 ARG304 LEU305 SER306 THR307 GLN308 GLY309 PHE310 ALA311 TRP312 ASP313 GLN314 PRO315 ILE316 ALA317 ASP318 ASN319 LYS320 THR321 LYS322 GLU323 GLY324 ARG325 ALA326 MET327 ASN328 ARG329 ARG330 VAL331 PHE332 ALA333 THR334 ILE335 THR336 GLY337 SER338 ARG339
Unit 3 MET220 GLU221 LEU222 THR223 GLU224 ASP225 LEU226 ASN227 MET228 GLU229 LEU230 ARG231 VAL232 PHE233 PHE234 ASP235 THR236 ASN237 LYS238 SER239 ASN240 ILE241 LYS242 ASP243 GLN244 TYR245 LYS246 PRO247 GLU248 ILE249 ALA250 LYS251 VAL252 ALA253 GLU254 LYS255 LEU256 SER257 GLU258 TYR259 PRO260 ASN261 ALA262 THR263 ALA264 ARG265 ILE266 GLU267 GLY268 HIS269 THR270 ASP271 ASN272 THR273 GLY274 PRO275 ARG276 LYS277 LEU278 ASN279 GLU280 ARG281 LEU282 SER283 LEU284 ALA285 ARG286 ALA287 ASN288 SER289 VAL290 LYS291 SER292 ALA293 LEU294 VAL295 ASN296 GLU297 TYR298 ASN299 VAL300 ASP301 ALA302 SER303 ARG304 LEU305 SER306 THR307 GLN308 GLY309 PHE310 ALA311 TRP312 ASP313 GLN314 PRO315 ILE316 ALA317 ASP318 ASN319 LYS320 THR321 LYS322 GLU323 GLY324 ARG325 ALA326 MET327 ASN328 ARG329 ARG330 VAL331 PHE332 ALA333 THR334 ILE335 THR336 GLY337 SER338 ARG339
Unit 4 MET220 GLU221 LEU222 THR223 GLU224 ASP225 LEU226 ASN227 MET228 GLU229 LEU230 ARG231 VAL232 PHE233 PHE234 ASP235 THR236 ASN237 LYS238 SER239 ASN240 ILE241 LYS242 ASP243 GLN244 TYR245 LYS246 PRO247 GLU248 ILE249 ALA250 LYS251 VAL252 ALA253 GLU254 LYS255 LEU256 SER257 GLU258 TYR259 PRO260 ASN261 ALA262 THR263 ALA264 ARG265 ILE266 GLU267 GLY268 HIS269 THR270 ASP271 ASN272 THR273 GLY274 PRO275 ARG276 LYS277 LEU278 ASN279 GLU280 ARG281 LEU282 SER283 LEU284 ALA285 ARG286 ALA287 ASN288 SER289 VAL290 LYS291 SER292 ALA293 LEU294 VAL295 ASN296 GLU297 TYR298 ASN299 VAL300 ASP301 ALA302 SER303 ARG304 LEU305 SER306 THR307 GLN308 GLY309 PHE310 ALA311 TRP312 ASP313 GLN314 PRO315 ILE316 ALA317 ASP318 ASN319 LYS320 THR321 LYS322 GLU323 GLY324 ARG325 ALA326 MET327 ASN328 ARG329 ARG330 VAL331 PHE332 ALA333 THR334 ILE335 THR336 GLY337 SER338 ARG339
Unit 5 HIS219 MET220 GLU221 LEU222 THR223 GLU224 ASP225 LEU226 ASN227 MET228 GLU229 LEU230 ARG231 VAL232 PHE233 PHE234 ASP235 THR236 ASN237 LYS238 SER239 ASN240 ILE241 LYS242 ASP243 GLN244 TYR245 LYS246 PRO247 GLU248 ILE249 ALA250 LYS251 VAL252 ALA253 GLU254 LYS255 LEU256 SER257 GLU258 TYR259 PRO260 ASN261 ALA262 THR263 ALA264 ARG265 ILE266 GLU267 GLY268 HIS269 THR270 ASP271 ASN272 THR273 GLY274 PRO275 ARG276 LYS277 LEU278 ASN279 GLU280 ARG281 LEU282 SER283 LEU284 ALA285 ARG286 ALA287 ASN288 SER289 VAL290 LYS291 SER292 ALA293 LEU294 VAL295 ASN296 GLU297 TYR298 ASN299 VAL300 ASP301 ALA302 SER303 ARG304 LEU305 SER306 THR307 GLN308 GLY309 PHE310 ALA311 TRP312 ASP313 GLN314 PRO315 ILE316 ALA317 ASP318 ASN319 LYS320 THR321 LYS322 GLU323 GLY324 ARG325 ALA326 MET327 ASN328 ARG329 ARG330 VAL331 PHE332 ALA333 THR334 ILE335 THR336 GLY337 SER338 ARG339
Unit 6 HIS219 MET220 GLU221 LEU222 THR223 GLU224 ASP225 LEU226 ASN227 MET228 GLU229 LEU230 ARG231 VAL232 PHE233 PHE234 ASP235 THR236 ASN237 LYS238 SER239 ASN240 ILE241 LYS242 ASP243 GLN244 TYR245 LYS246 PRO247 GLU248 ILE249 ALA250 LYS251 VAL252 ALA253 GLU254 LYS255 LEU256 SER257 GLU258 TYR259 PRO260 ASN261 ALA262 THR263 ALA264 ARG265 ILE266 GLU267 GLY268 HIS269 THR270 ASP271 ASN272 THR273 GLY274 PRO275 ARG276 LYS277 LEU278 ASN279 GLU280 ARG281 LEU282 SER283 LEU284 ALA285 ARG286 ALA287 ASN288 SER289 VAL290 LYS291 SER292 ALA293 LEU294 VAL295 ASN296 GLU297 TYR298 ASN299 VAL300 ASP301 ALA302 SER303 ARG304 LEU305 SER306 THR307 GLN308 GLY309 PHE310 ALA311 TRP312 ASP313 GLN314 PRO315 ILE316 ALA317 ASP318 ASN319 LYS320 THR321 LYS322 GLU323 GLY324 ARG325 ALA326 MET327 ASN328 ARG329 ARG330 VAL331 PHE332 ALA333 THR334 ILE335 THR336 GLY337 SER338 ARG339
Unit 7 MET220 GLU221 LEU222 THR223 GLU224 ASP225 LEU226 ASN227 MET228 GLU229 LEU230 ARG231 VAL232 PHE233 PHE234 ASP235 THR236 ASN237 LYS238 SER239 ASN240 ILE241 LYS242 ASP243 GLN244 TYR245 LYS246 PRO247 GLU248 ILE249 ALA250 LYS251 VAL252 ALA253 GLU254 LYS255 LEU256 SER257 GLU258 TYR259 PRO260 ASN261 ALA262 THR263 ALA264 ARG265 ILE266 GLU267 GLY268 HIS269 THR270 ASP271 ASN272 THR273 GLY274 PRO275 ARG276 LYS277 LEU278 ASN279 GLU280 ARG281 LEU282 SER283 LEU284 ALA285 ARG286 ALA287 ASN288 SER289 VAL290 LYS291 SER292 ALA293 LEU294 VAL295 ASN296 GLU297 TYR298 ASN299 VAL300 ASP301 ALA302 SER303 ARG304 LEU305 SER306 THR307 GLN308 GLY309 PHE310 ALA311 TRP312 ASP313 GLN314 PRO315 ILE316 ALA317 ASP318 ASN319 LYS320 THR321 LYS322 GLU323 GLY324 ARG325 ALA326 MET327 ASN328 ARG329 ARG330 VAL331 PHE332 ALA333 THR334 ILE335 THR336 GLY337 SER338 ARG339
Unit 8 MET220 GLU221 LEU222 THR223 GLU224 ASP225 LEU226 ASN227 MET228 GLU229 LEU230 ARG231 VAL232 PHE233 PHE234 ASP235 THR236 ASN237 LYS238 SER239 ASN240 ILE241 LYS242 ASP243 GLN244 TYR245 LYS246 PRO247 GLU248 ILE249 ALA250 LYS251 VAL252 ALA253 GLU254 LYS255 LEU256 SER257 GLU258 TYR259 PRO260 ASN261 ALA262 THR263 ALA264 ARG265 ILE266 GLU267 GLY268 HIS269 THR270 ASP271 ASN272 THR273 GLY274 PRO275 ARG276 LYS277 LEU278 ASN279 GLU280 ARG281 LEU282 SER283 LEU284 ALA285 ARG286 ALA287 ASN288 SER289 VAL290 LYS291 SER292 ALA293 LEU294 VAL295 ASN296 GLU297 TYR298 ASN299 VAL300 ASP301 ALA302 SER303 ARG304 LEU305 SER306 THR307 GLN308 GLY309 PHE310 ALA311 TRP312 ASP313 GLN314 PRO315 ILE316 ALA317 ASP318 ASN319 LYS320 THR321 LYS322 GLU323 GLY324 ARG325 ALA326 MET327 ASN328 ARG329 ARG330 VAL331 PHE332 ALA333 THR334 ILE335 THR336 GLY337 SER338 ARG339
Unit 9 ALA401 FGA402 API403 DAL404 DAL405
Unit 10 ALA401 FGA402 API403 DAL404 DAL405
Unit 11 ALA401 FGA402 API403 DAL404 DAL405
Unit 12 ALA401 FGA402 API403 DAL404 DAL405
Unit 13 ALA401 FGA402 API403 DAL404 DAL405
Unit 14 ALA401 FGA402 API403 DAL404 DAL405
Unit 15 ALA401 FGA402 API403 DAL404 DAL405
Unit 16 ALA401 FGA402 API403 DAL404 DAL405
Ligands
Unit 17 CL1
Unit 18 CL2
Unit 19 CL3
Unit 20 CL4
Unit 21 CL5
Unit 22 CL6
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany