3SGZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   HIGH RESOLUTION CRYSTAL STRUCTURE OF RAT LONG CHAIN HYDROXY ACID OXIDASE IN COMPLEX WITH THE INHIBITOR 4-CARBOXY-5-[(4-CHIOROPHENYL) SULFANYL]-1, 2, 3-THIADIAZOLE.

Authors :   Z. Chen, C. Vignaud, A. Jaafar, F. Gueritte, D. Guenard, F. Lederer, F. S

Date :   15 Jun 11 (Deposition) - 07 Mar 12 (Release) - 25 Apr 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.35

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (4x)
Biol. Unit 2: B  (4x)
Biol. Unit 3: C  (4x)
Biol. Unit 4: A  (8x)
Biol. Unit 5: B (4x),C (4x)

Keywords :   Flavoprotein, Homology, Long Chain Hydroxy Acid Oxidase, Inhibitor, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. W. Chen, C. Vignaud, A. Jaafar, B. Levy, F. Gueritte, D. Guenard, F. Lederer, F. S. Mathews
High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1, 2, 3-Thiadiazole. Implications For Inhibitor Specificity And Drug Design.
Biochimie V. 94 1172 2012
PubMed-ID: 22342614 | Reference-DOI: 10.1016/J.BIOCHI.2012.02.003
(for further references see the PDB file header)

Molecule 1 - HYDROXYACID OXIDASE 2
	Chains	:	A, B, C
	EC Number	:	1.1.3.15
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	HAO2, HAO3, HAOX2
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	HAOX2, (S)-2-HYDROXY-ACID OXIDASE, PEROXISOMAL, LONG CHAIN ALPHA-HYDROXY ACID OXIDASE, LONG-CHAIN L-2-HYDROXY ACID OXIDASE

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (4x)	:	A
Biological Unit 2 (4x)	:		B
Biological Unit 3 (4x)	:			C
Biological Unit 4 (8x)	:	A
Biological Unit 5 (4x)	:		B (4x)	C (4x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	FMN	3	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	HO6	3	Ligand/Ion	5-[(4-METHYLPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLIC ACID

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	HO6	4	Ligand/Ion	5-[(4-METHYLPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLIC ACID

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	HO6	4	Ligand/Ion	5-[(4-METHYLPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLIC ACID

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	HO6	4	Ligand/Ion	5-[(4-METHYLPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLIC ACID

Biological Unit 4 (2, 16)

No.	Name	Count	Type	Full Name
1	FMN	8	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	HO6	8	Ligand/Ion	5-[(4-METHYLPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLIC ACID

Biological Unit 5 (2, 8)

No.	Name	Count	Type	Full Name
1	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	HO6	4	Ligand/Ion	5-[(4-METHYLPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLIC ACID

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:23 , ILE A:24 , SER A:75 , PRO A:76 , THR A:77 , ALA A:78 , SER A:105 , GLN A:127 , TYR A:129 , THR A:155 , LYS A:223 , SER A:245 , HIS A:247 , GLY A:248 , ARG A:250 , ASP A:278 , GLY A:279 , GLY A:280 , ARG A:282 , GLY A:301 , ARG A:302 , PRO A:303 , LEU A:305 , HO6 A:402 , HOH A:503 , HOH A:504	BINDING SITE FOR RESIDUE FMN A 401
2	AC2	SOFTWARE	PHE A:23 , PHE A:79 , TYR A:107 , TYR A:129 , ARG A:164 , LEU A:198 , HIS A:247 , ARG A:250 , FMN A:401	BINDING SITE FOR RESIDUE HO6 A 402
3	AC3	SOFTWARE	PHE B:23 , ILE B:24 , SER B:75 , PRO B:76 , THR B:77 , ALA B:78 , SER B:105 , GLN B:127 , TYR B:129 , THR B:155 , LYS B:223 , SER B:245 , HIS B:247 , GLY B:248 , ARG B:250 , ASP B:278 , GLY B:279 , GLY B:280 , ARG B:282 , GLY B:301 , ARG B:302 , PRO B:303 , LEU B:305 , HO6 B:402 , HOH B:503 , HOH B:509	BINDING SITE FOR RESIDUE FMN B 401
4	AC4	SOFTWARE	PHE B:23 , PHE B:79 , TYR B:107 , TYR B:129 , LEU B:161 , ARG B:164 , LEU B:198 , PHE B:199 , HIS B:247 , ARG B:250 , FMN B:401	BINDING SITE FOR RESIDUE HO6 B 402
5	AC5	SOFTWARE	PHE C:23 , ILE C:24 , SER C:75 , PRO C:76 , THR C:77 , ALA C:78 , SER C:105 , GLN C:127 , TYR C:129 , THR C:155 , LYS C:223 , SER C:245 , HIS C:247 , GLY C:248 , ARG C:250 , ASP C:278 , GLY C:279 , GLY C:280 , ARG C:282 , GLY C:301 , ARG C:302 , PRO C:303 , LEU C:305 , HO6 C:402 , HOH C:1002 , HOH C:1006	BINDING SITE FOR RESIDUE FMN C 401
6	AC6	SOFTWARE	PHE C:23 , PHE C:79 , TYR C:107 , TYR C:129 , ARG C:164 , LEU C:198 , HIS C:247 , ARG C:250 , FMN C:401	BINDING SITE FOR RESIDUE HO6 C 402

(no "SS Bond" information available for 3SGZ)

Asymmetric Unit

No.	Residues
1	Phe A:199	-	Pro A:200

(no "SAP(SNP)/Variant" information available for 3SGZ)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX2_RAT	246-252	3	A:245-251 B:245-251 C:245-251

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX2_RAT	246-252	4	A:245-251 - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX2_RAT	246-252	4	- B:245-251 -

Biological Unit 3 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX2_RAT	246-252	4	- - C:245-251

Biological Unit 4 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX2_RAT	246-252	8	A:245-251 - -

Biological Unit 5 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX2_RAT	246-252	8	- B:245-251 C:245-251

Asymmetric Unit (7, 21)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000046942	1	ENSRNOE00000330508	chr2:193557229-193557142	88	HAOX2_RAT	-	0	0	-	-
1.2	ENSRNOT00000046942	2	ENSRNOE00000336299	chr2:193549512-193549408	105	HAOX2_RAT	-	0	0	-	-
1.3	ENSRNOT00000046942	3	ENSRNOE00000188996	chr2:193548657-193548519	139	HAOX2_RAT	1-44	44	3	A:1-43 B:1-43 C:1-43	43 43 43
1.4	ENSRNOT00000046942	4	ENSRNOE00000189030	chr2:193547532-193547381	152	HAOX2_RAT	44-95	52	3	A:43-94 B:43-94 C:43-94	52 52 52
1.5	ENSRNOT00000046942	5	ENSRNOE00000189057	chr2:193546078-193545795	284	HAOX2_RAT	95-189	95	3	A:94-182 B:94-182 C:94-182	89 89 89
1.6	ENSRNOT00000046942	6	ENSRNOE00000189087	chr2:193544624-193544415	210	HAOX2_RAT	190-259	70	3	A:198-258 B:198-258 C:198-258	61 61 61
1.7	ENSRNOT00000046942	7	ENSRNOE00000189115	chr2:193534744-193534586	159	HAOX2_RAT	260-312	53	3	A:259-311 B:259-311 C:259-311	53 53 53
1.8	ENSRNOT00000046942	8	ENSRNOE00000189146	chr2:193534270-193534201	70	HAOX2_RAT	313-336	24	3	A:312-335 B:312-335 C:312-335	24 24 24
1.9	ENSRNOT00000046942	9	ENSRNOE00000340820	chr2:193533272-193532833	440	HAOX2_RAT	336-353	18	3	A:335-351 B:335-349 C:335-351	17 15 17

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:336
 aligned with HAOX2_RAT | Q07523 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:351
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 
            HAOX2_RAT     2 PLVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFSR 352
               SCOP domains d3sgza_ A: automated matches                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhhh.................eee..eee...eee....hhhhh..hhhhhhhhhhhhhh.eeee......hhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhh..---------------.......hhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMN_HYD---------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: A:1-43 UniProt: 1-44        --------------------------------------------------Exon 1.5  PDB: A:94-182 UniProt: 95-189 [INCOMPLETE]                                           Exon 1.6  PDB: A:198-258 UniProt: 190-259 [INCOMPLETE]                Exon 1.7  PDB: A:259-311 UniProt: 260-312            Exon 1.8  PDB: A:312-335---------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.4  PDB: A:43-94 UniProt: 44-95               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9          Transcript 1 (2)
                 3sgz A   1 PLVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAA---------------LFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFSR 351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 |       -       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350 
                                                                                                                                                                                                               182             198

Chain B from PDB  Type:PROTEIN  Length:334
 aligned with HAOX2_RAT | Q07523 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:349
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341         
            HAOX2_RAT     2 PLVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQF 350
               SCOP domains d3sgzb_ B: automated matches                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh................eee..eee...eee....hhhhh..hhhhhhhhhhhhhh.eeee......hhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhh..---------------.......hhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMN_HYD-------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: B:1-43 UniProt: 1-44        --------------------------------------------------Exon 1.5  PDB: B:94-182 UniProt: 95-189 [INCOMPLETE]                                           Exon 1.6  PDB: B:198-258 UniProt: 190-259 [INCOMPLETE]                Exon 1.7  PDB: B:259-311 UniProt: 260-312            Exon 1.8  PDB: B:312-335-------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.4  PDB: B:43-94 UniProt: 44-95               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9        Transcript 1 (2)
                 3sgz B   1 PLVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAA---------------LFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQF 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 |       -       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
                                                                                                                                                                                                               182             198

Chain C from PDB  Type:PROTEIN  Length:336
 aligned with HAOX2_RAT | Q07523 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:351
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 
            HAOX2_RAT     2 PLVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFSR 352
               SCOP domains d3sgzc_ C: automated matches                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.................eee..eee...eee....hhhhh..hhhhhhhhhhhhhh.eeee......hhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhh..---------------.......hhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMN_HYD---------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: C:1-43 UniProt: 1-44        --------------------------------------------------Exon 1.5  PDB: C:94-182 UniProt: 95-189 [INCOMPLETE]                                           Exon 1.6  PDB: C:198-258 UniProt: 190-259 [INCOMPLETE]                Exon 1.7  PDB: C:259-311 UniProt: 260-312            Exon 1.8  PDB: C:312-335---------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.4  PDB: C:43-94 UniProt: 44-95               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9          Transcript 1 (2)
                 3sgz C   1 PLVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAA---------------LFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLIQFSR 351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180 |       -       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350 
                                                                                                                                                                                                               182             198

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: FMN-linked oxidoreductases (290)

Family: FMN-linked oxidoreductases (242)

Protein domain: automated matches (40)

Norway rat (Rattus norvegicus) [TaxId: 10116] (1)

1a	d3sgza_	A:
1b	d3sgzb_	B:
1c	d3sgzc_	C:

(no "CATH Domain" information available for 3SGZ)

(no "Pfam Domain" information available for 3SGZ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (HAOX2_RAT | Q07523)

molecular function
	GO:0003973	(S)-2-hydroxy-acid oxidase activity	Catalysis of the reaction: (S)-2-hydroxy-acid + O2 = 2-oxo acid + hydrogen peroxide.
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0052853	long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	Catalysis of the reaction: long-chain-(S)-2-hydroxy-acid + O2 = long-chain-2-oxo acid + hydrogen peroxide. Long chain refers to a chain length of 14 to 18 carbons.
	GO:0052854	medium-chain-(S)-2-hydroxy-acid oxidase activity	Catalysis of the reaction: medium-chain-(S)-2-hydroxy-acid + O2 = medium-chain-2-oxo acid + hydrogen peroxide. Medium chain refers to a chain length of between 8 and 12 carbons.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0052852	very-long-chain-(S)-2-hydroxy-acid oxidase activity	Catalysis of the reaction: very-long-chain (S)-2-hydroxy-acid + O2 = very-long-chain 2-oxo acid + hydrogen peroxide. Very long chain refers to a chain length of greater than 18 carbons.
biological process
	GO:0018924	mandelate metabolic process	The chemical reactions and pathways involving mandelate, the anion of mandelic acid. Mandelic acid (alpha-hydroxybenzeneacetic acid) is an 8-carbon alpha-hydroxy acid (AHA) that is used in organic chemistry and as a urinary antiseptic.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0051260	protein homooligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
cellular component
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

Asymmetric Unit
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	HAOX2_RAT \| Q07523	:	1tb3

1tb3	CRYSTAL STRUCTURE ANALYSIS OF RECOMBINANT RAT KIDNEY LONG- CHAIN HYDROXY ACID OXIDASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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PROSITE Motifs (1, 3)

Exons (7, 21)

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