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3SGZ
Asym. Unit
Info
Asym.Unit (191 KB)
Biol.Unit 1 (247 KB)
Biol.Unit 2 (243 KB)
Biol.Unit 3 (246 KB)
Biol.Unit 4 (490 KB)
Biol.Unit 5 (485 KB)
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(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURE OF RAT LONG CHAIN HYDROXY ACID OXIDASE IN COMPLEX WITH THE INHIBITOR 4-CARBOXY-5-[(4-CHIOROPHENYL) SULFANYL]-1, 2, 3-THIADIAZOLE.
Authors
:
Z. Chen, C. Vignaud, A. Jaafar, F. Gueritte, D. Guenard, F. Lederer, F. S
Date
:
15 Jun 11 (Deposition) - 07 Mar 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (4x)
Biol. Unit 2: B (4x)
Biol. Unit 3: C (4x)
Biol. Unit 4: A (8x)
Biol. Unit 5: B,C (4x)
Keywords
:
Flavoprotein, Homology, Long Chain Hydroxy Acid Oxidase, Inhibitor, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. W. Chen, C. Vignaud, A. Jaafar, B. Levy, F. Gueritte, D. Guenard, F. Lederer, F. S. Mathews
High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chlorophenyl)Sulfanyl]-1, 2, 3-Thiadiazole. Implications For Inhibitor Specificity And Drug Design.
Biochimie V. 94 1172 2012
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
2a: 5-[(4-METHYLPHENYL)SULFANYL]-1,2,3... (HO6a)
2b: 5-[(4-METHYLPHENYL)SULFANYL]-1,2,3... (HO6b)
2c: 5-[(4-METHYLPHENYL)SULFANYL]-1,2,3... (HO6c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMN
3
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
HO6
3
Ligand/Ion
5-[(4-METHYLPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLIC ACID
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:23 , ILE A:24 , SER A:75 , PRO A:76 , THR A:77 , ALA A:78 , SER A:105 , GLN A:127 , TYR A:129 , THR A:155 , LYS A:223 , SER A:245 , HIS A:247 , GLY A:248 , ARG A:250 , ASP A:278 , GLY A:279 , GLY A:280 , ARG A:282 , GLY A:301 , ARG A:302 , PRO A:303 , LEU A:305 , HO6 A:402 , HOH A:503 , HOH A:504
BINDING SITE FOR RESIDUE FMN A 401
2
AC2
SOFTWARE
PHE A:23 , PHE A:79 , TYR A:107 , TYR A:129 , ARG A:164 , LEU A:198 , HIS A:247 , ARG A:250 , FMN A:401
BINDING SITE FOR RESIDUE HO6 A 402
3
AC3
SOFTWARE
PHE B:23 , ILE B:24 , SER B:75 , PRO B:76 , THR B:77 , ALA B:78 , SER B:105 , GLN B:127 , TYR B:129 , THR B:155 , LYS B:223 , SER B:245 , HIS B:247 , GLY B:248 , ARG B:250 , ASP B:278 , GLY B:279 , GLY B:280 , ARG B:282 , GLY B:301 , ARG B:302 , PRO B:303 , LEU B:305 , HO6 B:402 , HOH B:503 , HOH B:509
BINDING SITE FOR RESIDUE FMN B 401
4
AC4
SOFTWARE
PHE B:23 , PHE B:79 , TYR B:107 , TYR B:129 , LEU B:161 , ARG B:164 , LEU B:198 , PHE B:199 , HIS B:247 , ARG B:250 , FMN B:401
BINDING SITE FOR RESIDUE HO6 B 402
5
AC5
SOFTWARE
PHE C:23 , ILE C:24 , SER C:75 , PRO C:76 , THR C:77 , ALA C:78 , SER C:105 , GLN C:127 , TYR C:129 , THR C:155 , LYS C:223 , SER C:245 , HIS C:247 , GLY C:248 , ARG C:250 , ASP C:278 , GLY C:279 , GLY C:280 , ARG C:282 , GLY C:301 , ARG C:302 , PRO C:303 , LEU C:305 , HO6 C:402 , HOH C:1002 , HOH C:1006
BINDING SITE FOR RESIDUE FMN C 401
6
AC6
SOFTWARE
PHE C:23 , PHE C:79 , TYR C:107 , TYR C:129 , ARG C:164 , LEU C:198 , HIS C:247 , ARG C:250 , FMN C:401
BINDING SITE FOR RESIDUE HO6 C 402
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: FMN_HYDROXY_ACID_DH_1 (A:245-251,B:245-251,C:245-251)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FMN_HYDROXY_ACID_DH_1
PS00557
FMN-dependent alpha-hydroxy acid dehydrogenases active site.
HAOX2_RAT
246-252
3
A:245-251
B:245-251
C:245-251
[
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]
Exons
(7, 21)
Info
All Exons
Exon 1.3 (A:1-43 | B:1-43 | C:1-43)
Exon 1.4 (A:43-94 | B:43-94 | C:43-94)
Exon 1.5 (A:94-182 | B:94-182 | C:94-182)
Exon 1.6 (A:198-258 | B:198-258 | C:198-258)
Exon 1.7 (A:259-311 | B:259-311 | C:259-311)
Exon 1.8 (A:312-335 | B:312-335 | C:312-335)
Exon 1.9 (A:335-351 | B:335-349 | C:335-351)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9
8: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000046942
1
ENSRNOE00000330508
chr2:
193557229-193557142
88
HAOX2_RAT
-
0
0
-
-
1.2
ENSRNOT00000046942
2
ENSRNOE00000336299
chr2:
193549512-193549408
105
HAOX2_RAT
-
0
0
-
-
1.3
ENSRNOT00000046942
3
ENSRNOE00000188996
chr2:
193548657-193548519
139
HAOX2_RAT
1-44
44
3
A:1-43
B:1-43
C:1-43
43
43
43
1.4
ENSRNOT00000046942
4
ENSRNOE00000189030
chr2:
193547532-193547381
152
HAOX2_RAT
44-95
52
3
A:43-94
B:43-94
C:43-94
52
52
52
1.5
ENSRNOT00000046942
5
ENSRNOE00000189057
chr2:
193546078-193545795
284
HAOX2_RAT
95-189
95
3
A:94-182
B:94-182
C:94-182
89
89
89
1.6
ENSRNOT00000046942
6
ENSRNOE00000189087
chr2:
193544624-193544415
210
HAOX2_RAT
190-259
70
3
A:198-258
B:198-258
C:198-258
61
61
61
1.7
ENSRNOT00000046942
7
ENSRNOE00000189115
chr2:
193534744-193534586
159
HAOX2_RAT
260-312
53
3
A:259-311
B:259-311
C:259-311
53
53
53
1.8
ENSRNOT00000046942
8
ENSRNOE00000189146
chr2:
193534270-193534201
70
HAOX2_RAT
313-336
24
3
A:312-335
B:312-335
C:312-335
24
24
24
1.9
ENSRNOT00000046942
9
ENSRNOE00000340820
chr2:
193533272-193532833
440
HAOX2_RAT
336-353
18
3
A:335-351
B:335-349
C:335-351
17
15
17
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3sgza_ (A:)
1b: SCOP_d3sgzb_ (B:)
1c: SCOP_d3sgzc_ (C:)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
automated matches
(40)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d3sgza_
A:
1b
d3sgzb_
B:
1c
d3sgzc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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