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3SFU
Asym. Unit
Info
Asym.Unit (262 KB)
Biol.Unit 1 (170 KB)
Biol.Unit 2 (170 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MURINE NOROVIRUS RNA DEPENDENT RNA POLYMERASE IN COMPLEX WITH RIBAVIRIN
Authors
:
K. H. Kim, I. Alam
Date
:
14 Jun 11 (Deposition) - 09 May 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B,C (1x)
Keywords
:
Right Handed Fold, Viral Replication Enzyme, Rna Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Alam, J. H. Lee, K. J. Cho, K. R. Han, J. M. Yang, M. S. Chung, K. H. Kim
Crystal Structures Of Murine Norovirus-1 Rna-Dependent Rna Polymerase In Complex With 2-Thiouridine Or Ribavirin.
Virology V. 426 143 2012
[
close entry info
]
Hetero Components
(4, 59)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
1y: GLYCEROL (GOLy)
1z: GLYCEROL (GOLz)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: 1-(BETA-D-RIBOFURANOSYL)-1H-1,2,4-... (RBVa)
3b: 1-(BETA-D-RIBOFURANOSYL)-1H-1,2,4-... (RBVb)
3c: 1-(BETA-D-RIBOFURANOSYL)-1H-1,2,4-... (RBVc)
4a: SULFATE ION (SO4a)
4aa: SULFATE ION (SO4aa)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
4v: SULFATE ION (SO4v)
4w: SULFATE ION (SO4w)
4x: SULFATE ION (SO4x)
4y: SULFATE ION (SO4y)
4z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
26
Ligand/Ion
GLYCEROL
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
RBV
3
Ligand/Ion
1-(BETA-D-RIBOFURANOSYL)-1H-1,2,4-TRIAZOLE-3-CARBOXAMIDE
4
SO4
27
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(58, 58)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:250 , THR A:308 , THR A:309 , ASN A:312 , TYR A:344 , GLY A:345 , ASP A:346 , ASP A:347 , HOH A:844 , HOH A:866
BINDING SITE FOR RESIDUE RBV A 601
02
AC2
SOFTWARE
TRP A:134 , HOH A:766
BINDING SITE FOR RESIDUE SO4 A 602
03
AC3
SOFTWARE
THR A:148 , HIS A:149 , ASN A:152
BINDING SITE FOR RESIDUE SO4 A 603
04
AC4
SOFTWARE
HIS A:241 , THR A:387 , LEU A:388 , TRP A:405 , HOH A:763 , HOH A:857
BINDING SITE FOR RESIDUE SO4 A 604
05
AC5
SOFTWARE
LYS A:29 , HIS A:426 , GLN A:427 , GLU A:431
BINDING SITE FOR RESIDUE SO4 A 605
06
AC6
SOFTWARE
TYR A:246 , THR A:247 , ARG A:248 , HOH A:822
BINDING SITE FOR RESIDUE SO4 A 606
07
AC7
SOFTWARE
ARG A:7 , PRO A:8 , SER A:9 , SER A:61 , ARG A:67
BINDING SITE FOR RESIDUE SO4 A 607
08
AC8
SOFTWARE
LYS A:158 , SER A:159 , HOH A:843
BINDING SITE FOR RESIDUE SO4 A 608
09
AC9
SOFTWARE
ARG A:408 , GOL A:615
BINDING SITE FOR RESIDUE SO4 A 609
10
BC1
SOFTWARE
ASP A:243 , ASP A:347 , GLU A:348 , SER A:392 , HOH A:802
BINDING SITE FOR RESIDUE MG A 610
11
BC2
SOFTWARE
SER A:27 , THR A:28 , LYS A:29 , ASN A:425
BINDING SITE FOR RESIDUE GOL A 611
12
BC3
SOFTWARE
GLY A:400 , ASP A:401 , TRP A:405
BINDING SITE FOR RESIDUE GOL A 612
13
BC4
SOFTWARE
SER A:223 , MET A:224 , ASN A:225
BINDING SITE FOR RESIDUE GOL A 614
14
BC5
SOFTWARE
ASP A:410 , ARG A:411 , HIS A:453 , SO4 A:609
BINDING SITE FOR RESIDUE GOL A 615
15
BC6
SOFTWARE
THR A:328 , LEU A:354 , GLU A:355 , THR B:328 , GLU B:355 , GOL B:613 , GOL B:618
BINDING SITE FOR RESIDUE GOL A 616
16
BC7
SOFTWARE
ARG A:96 , PHE A:215 , ASN A:216 , PRO A:217 , ARG A:219 , MET A:336 , GLU A:340 , PHE A:341
BINDING SITE FOR RESIDUE GOL A 617
17
BC8
SOFTWARE
PRO A:103 , GLN A:104 , LEU A:268 , PRO A:270
BINDING SITE FOR RESIDUE GOL A 618
18
BC9
SOFTWARE
SER A:115 , ASP A:207 , PRO A:306
BINDING SITE FOR RESIDUE GOL A 619
19
CC1
SOFTWARE
PRO A:6 , ALA A:18 , TYR A:293
BINDING SITE FOR RESIDUE GOL A 620
20
CC2
SOFTWARE
ASP B:250 , THR B:309 , ASN B:312 , GLY B:345 , ASP B:346 , ASP B:347 , HOH B:747 , HOH B:776
BINDING SITE FOR RESIDUE RBV B 601
21
CC3
SOFTWARE
HIS B:149 , ASN B:152
BINDING SITE FOR RESIDUE SO4 B 602
22
CC4
SOFTWARE
TYR B:246 , ARG B:248
BINDING SITE FOR RESIDUE SO4 B 603
23
CC5
SOFTWARE
LYS A:158 , LYS B:29 , HIS B:426 , GLN B:427 , HOH B:714
BINDING SITE FOR RESIDUE SO4 B 604
24
CC6
SOFTWARE
LYS B:158 , SER B:159 , HOH B:765
BINDING SITE FOR RESIDUE SO4 B 605
25
CC7
SOFTWARE
ASP B:410 , ARG B:411 , HIS B:453
BINDING SITE FOR RESIDUE SO4 B 606
26
CC8
SOFTWARE
GLY B:51 , SER B:52 , SER B:61 , LEU B:62 , GLN B:63
BINDING SITE FOR RESIDUE SO4 B 607
27
CC9
SOFTWARE
ARG B:408
BINDING SITE FOR RESIDUE SO4 B 608
28
DC1
SOFTWARE
ASP B:243 , ASP B:347 , GLU B:348 , SER B:392
BINDING SITE FOR RESIDUE MG B 609
29
DC2
SOFTWARE
SER B:223 , MET B:224 , ASN B:225
BINDING SITE FOR RESIDUE GOL B 610
30
DC3
SOFTWARE
VAL B:325 , ARG B:329 , ASP B:331
BINDING SITE FOR RESIDUE GOL B 611
31
DC4
SOFTWARE
SER B:27 , THR B:28 , LYS B:29 , ASN B:425
BINDING SITE FOR RESIDUE GOL B 612
32
DC5
SOFTWARE
GLU A:338 , ASN A:353 , GOL A:616 , VAL B:327 , ARG B:329 , LYS B:360 , HOH B:764
BINDING SITE FOR RESIDUE GOL B 613
33
DC6
SOFTWARE
PRO B:82 , GLN B:83 , HOH B:750
BINDING SITE FOR RESIDUE GOL B 614
34
DC7
SOFTWARE
ARG B:248
BINDING SITE FOR RESIDUE GOL B 615
35
DC8
SOFTWARE
ASP B:401 , TRP B:405 , ASN C:237
BINDING SITE FOR RESIDUE GOL B 616
36
DC9
SOFTWARE
GLN B:104 , LEU B:268 , SER B:269 , PRO B:270
BINDING SITE FOR RESIDUE GOL B 617
37
EC1
SOFTWARE
VAL A:327 , LYS A:360 , GOL A:616 , GLU B:338 , ASN B:353 , LEU B:354 , GLU B:355
BINDING SITE FOR RESIDUE GOL B 618
38
EC2
SOFTWARE
LYS C:169 , LEU C:186 , LEU C:187 , ASP C:250 , LEU C:301 , SER C:303 , THR C:308 , THR C:309 , ASN C:312 , TYR C:344 , GLY C:345 , ASP C:346
BINDING SITE FOR RESIDUE RBV C 601
39
EC3
SOFTWARE
HIS C:149 , ASN C:152
BINDING SITE FOR RESIDUE SO4 C 602
40
EC4
SOFTWARE
THR C:247 , ARG C:248 , HOH C:723
BINDING SITE FOR RESIDUE SO4 C 603
41
EC5
SOFTWARE
ASP C:243 , ASP C:347 , GLU C:348 , SER C:392 , HOH C:767
BINDING SITE FOR RESIDUE MG C 604
42
EC6
SOFTWARE
ARG C:408 , HOH C:770
BINDING SITE FOR RESIDUE SO4 C 605
43
EC7
SOFTWARE
GLN C:389 , GLY C:400 , ASP C:401 , GOL C:616
BINDING SITE FOR RESIDUE GOL C 606
44
EC8
SOFTWARE
ALA B:236 , ALA C:236 , ASN C:237
BINDING SITE FOR RESIDUE SO4 C 607
45
EC9
SOFTWARE
LYS C:158 , SER C:159 , HOH C:766 , HOH C:805
BINDING SITE FOR RESIDUE SO4 C 608
46
FC1
SOFTWARE
GLY C:51 , SER C:52 , SER C:61 , LEU C:62 , GLN C:63
BINDING SITE FOR RESIDUE SO4 C 609
47
FC2
SOFTWARE
TRP C:134 , GLY C:136
BINDING SITE FOR RESIDUE SO4 C 610
48
FC3
SOFTWARE
ARG C:248
BINDING SITE FOR RESIDUE SO4 C 611
49
FC4
SOFTWARE
VAL C:359 , ARG C:366 , GLY C:380 , PRO C:381
BINDING SITE FOR RESIDUE SO4 C 612
50
FC5
SOFTWARE
ARG C:374 , ALA C:375 , LEU C:382 , GLU C:383 , HOH C:774 , HOH C:818
BINDING SITE FOR RESIDUE SO4 C 613
51
FC6
SOFTWARE
TYR C:240 , ARG C:384 , GLN C:386
BINDING SITE FOR RESIDUE SO4 C 614
52
FC7
SOFTWARE
ASP C:410 , ARG C:411 , HIS C:453
BINDING SITE FOR RESIDUE SO4 C 615
53
FC8
SOFTWARE
ASN B:237 , ALA C:236 , PHE C:238 , HIS C:241 , THR C:387 , LEU C:388 , GLN C:389 , TRP C:405 , GOL C:606
BINDING SITE FOR RESIDUE GOL C 616
54
FC9
SOFTWARE
GLN B:64 , ARG B:67 , THR C:11
BINDING SITE FOR RESIDUE GOL C 617
55
GC1
SOFTWARE
SER C:223 , MET C:224 , ASN C:225
BINDING SITE FOR RESIDUE GOL C 618
56
GC2
SOFTWARE
SER C:27 , THR C:28 , LYS C:29 , ASN C:425
BINDING SITE FOR RESIDUE GOL C 619
57
GC3
SOFTWARE
GLN C:146 , HIS C:149 , ALA C:150 , ASP C:191 , GLY C:193 , HOH C:758 , HOH C:855
BINDING SITE FOR RESIDUE GOL C 620
58
GC4
SOFTWARE
ARG C:96 , PRO C:217 , MET C:336 , SER C:339 , GLU C:340 , PHE C:341
BINDING SITE FOR RESIDUE GOL C 621
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3sfua_ (A:)
1b: SCOP_d3sfub_ (B:)
1c: SCOP_d3sfuc_ (C:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
automated matches
(100)
Murine norovirus 1 [TaxId: 223997]
(6)
1a
d3sfua_
A:
1b
d3sfub_
B:
1c
d3sfuc_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
close Pfam info
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