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(-) Description

Title :  STRUCTURAL CHARACTERIZATION OF A GII.4 2004 NOROVIRUS VARIANT (TCH05) BOUND TO SECRETOR LEWIS HBGA (LEB)
 
Authors :  S. Shanker, J. -M. Choi, B. Sankaran, R. L. Atmar, M. K. Estes, B. V. V. Pra
Date :  10 Jun 11  (Deposition) - 13 Jul 11  (Release) - 24 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.04
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  D,F  (1x)
Biol. Unit 4:  G,J  (1x)
Biol. Unit 5:  H  (1x)
Biol. Unit 6:  I  (1x)
Keywords :  Protein-Carbohydrate Complex, Leb Bound, Receptor Binding, Human Blood Group Antigens, Carbohydrate/Sugar Binding, Lewis Family, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Shanker, J. M. Choi, B. Sankaran, R. L. Atmar, M. K. Estes, B. V. Prasa
Structural Analysis Of Histo-Blood Group Antigen Binding Specificity In A Norovirus Gii. 4 Epidemic Variant: Implications For Epochal Evolution.
J. Virol. V. 85 8635 2011
PubMed-ID: 21715503  |  Reference-DOI: 10.1128/JVI.00848-11

(-) Compounds

Molecule 1 - CAPSID
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PROTRUDING DOMAIN (UNP RESIDUES 221-531)
    Organism Scientific: NOROVIRUS HU/GII.4/2004/NL
    Organism Taxid: 311380

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): A C       
Biological Unit 2 (1x):  B  E     
Biological Unit 3 (1x):    D F    
Biological Unit 4 (1x):       G  J
Biological Unit 5 (1x):        H  
Biological Unit 6 (1x):         I 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 48)

Asymmetric Unit (4, 48)
No.NameCountTypeFull Name
1BGC8Ligand/IonBETA-D-GLUCOSE
2FUC16Ligand/IonALPHA-L-FUCOSE
3GAL16Ligand/IonBETA-D-GALACTOSE
4NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2FUC4Ligand/IonALPHA-L-FUCOSE
3GAL4Ligand/IonBETA-D-GALACTOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (4, 12)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2FUC4Ligand/IonALPHA-L-FUCOSE
3GAL4Ligand/IonBETA-D-GALACTOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (4, 12)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2FUC4Ligand/IonALPHA-L-FUCOSE
3GAL4Ligand/IonBETA-D-GALACTOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (4, 12)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2FUC4Ligand/IonALPHA-L-FUCOSE
3GAL4Ligand/IonBETA-D-GALACTOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1BGC-1Ligand/IonBETA-D-GLUCOSE
2FUC-1Ligand/IonALPHA-L-FUCOSE
3GAL-1Ligand/IonBETA-D-GALACTOSE
4NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1BGC-1Ligand/IonBETA-D-GLUCOSE
2FUC-1Ligand/IonALPHA-L-FUCOSE
3GAL-1Ligand/IonBETA-D-GALACTOSE
4NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (48, 48)

Asymmetric Unit (48, 48)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:344 , ARG A:345 , ASP A:374 , GAL C:2 , NAG C:3 , SER C:442 , GLY C:443BINDING SITE FOR RESIDUE FUC C 1
02AC2SOFTWAREFUC C:1 , NAG C:3 , FUC C:4 , SER C:442BINDING SITE FOR RESIDUE GAL C 2
03AC3SOFTWAREFUC C:1 , GAL C:2 , FUC C:4 , GAL C:5 , HOH C:552BINDING SITE FOR RESIDUE NAG C 3
04AC4SOFTWAREGAL C:2 , NAG C:3 , GLN C:390 , ASP C:391 , GLY C:392 , SER C:393BINDING SITE FOR RESIDUE FUC C 4
05AC5SOFTWARENAG C:3 , BGC C:6BINDING SITE FOR RESIDUE GAL C 5
06AC6SOFTWAREGAL C:5BINDING SITE FOR RESIDUE BGC C 6
07AC7SOFTWARESER B:343 , THR B:344 , ARG B:345 , ASP B:374 , GAL E:2 , NAG E:3 , FUC E:4 , SER E:442 , GLY E:443BINDING SITE FOR RESIDUE FUC E 1
08AC8SOFTWAREFUC E:1 , NAG E:3 , FUC E:4 , SER E:442BINDING SITE FOR RESIDUE GAL E 2
09AC9SOFTWAREFUC E:1 , GAL E:2 , FUC E:4 , GAL E:5 , GLY E:392BINDING SITE FOR RESIDUE NAG E 3
10BC1SOFTWAREFUC E:1 , GAL E:2 , NAG E:3 , GLN E:390 , ASP E:391 , GLY E:392 , SER E:393 , SER E:442 , GLY E:443BINDING SITE FOR RESIDUE FUC E 4
11BC2SOFTWARENAG E:3 , BGC E:6BINDING SITE FOR RESIDUE GAL E 5
12BC3SOFTWAREPRO C:253 , GLN C:504 , GAL E:5BINDING SITE FOR RESIDUE BGC E 6
13BC4SOFTWARESER A:442 , GLY A:443 , SER C:343 , THR C:344 , ARG C:345 , ASP C:374 , GAL C:533 , NAG C:534 , FUC C:535BINDING SITE FOR RESIDUE FUC C 532
14BC5SOFTWARESER A:442 , FUC C:532 , NAG C:534 , FUC C:535BINDING SITE FOR RESIDUE GAL C 533
15BC6SOFTWAREFUC C:532 , GAL C:533 , FUC C:535 , GAL C:536BINDING SITE FOR RESIDUE NAG C 534
16BC7SOFTWAREASP A:391 , GLY A:392 , SER A:393 , FUC C:532 , GAL C:533 , NAG C:534BINDING SITE FOR RESIDUE FUC C 535
17BC8SOFTWARENAG C:534 , BGC C:537BINDING SITE FOR RESIDUE GAL C 536
18BC9SOFTWAREGAL C:536BINDING SITE FOR RESIDUE BGC C 537
19CC1SOFTWARESER D:343 , THR D:344 , ARG D:345 , ASP D:374 , GAL F:2 , NAG F:3 , FUC F:4 , GLY F:443 , TYR F:444BINDING SITE FOR RESIDUE FUC F 1
20CC2SOFTWAREFUC F:1 , NAG F:3 , FUC F:4 , SER F:442BINDING SITE FOR RESIDUE GAL F 2
21CC3SOFTWAREFUC F:1 , GAL F:2 , FUC F:4 , GAL F:5 , BGC F:6BINDING SITE FOR RESIDUE NAG F 3
22CC4SOFTWAREFUC F:1 , GAL F:2 , NAG F:3 , GLN F:390 , ASP F:391 , GLY F:392 , SER F:393 , GLY F:443BINDING SITE FOR RESIDUE FUC F 4
23CC5SOFTWARENAG F:3 , BGC F:6BINDING SITE FOR RESIDUE GAL F 5
24CC6SOFTWARENAG F:3 , GAL F:5 , HOH F:533BINDING SITE FOR RESIDUE BGC F 6
25CC7SOFTWAREGAL B:2 , NAG B:3 , FUC B:4 , SER B:442 , GLY B:443 , THR E:344 , ARG E:345 , ASP E:374BINDING SITE FOR RESIDUE FUC B 1
26CC8SOFTWAREFUC B:1 , NAG B:3 , FUC B:4 , SER B:442BINDING SITE FOR RESIDUE GAL B 2
27CC9SOFTWAREFUC B:1 , GAL B:2 , FUC B:4 , GAL B:5BINDING SITE FOR RESIDUE NAG B 3
28DC1SOFTWAREFUC B:1 , GAL B:2 , NAG B:3 , ASP B:391 , GLY B:392 , SER B:393 , SER B:442BINDING SITE FOR RESIDUE FUC B 4
29DC2SOFTWARENAG B:3 , BGC B:6BINDING SITE FOR RESIDUE GAL B 5
30DC3SOFTWAREGAL B:5BINDING SITE FOR RESIDUE BGC B 6
31DC4SOFTWAREGAL D:2 , FUC D:4 , SER D:442 , GLY D:443 , THR F:344 , ARG F:345 , ASP F:374BINDING SITE FOR RESIDUE FUC D 1
32DC5SOFTWAREFUC D:1 , NAG D:3 , FUC D:4 , SER D:442BINDING SITE FOR RESIDUE GAL D 2
33DC6SOFTWAREGAL D:2 , FUC D:4 , GAL D:5BINDING SITE FOR RESIDUE NAG D 3
34DC7SOFTWAREFUC D:1 , GAL D:2 , NAG D:3 , GLN D:390 , ASP D:391 , GLY D:392 , SER D:393 , SER D:442 , GLY D:443BINDING SITE FOR RESIDUE FUC D 4
35DC8SOFTWARENAG D:3 , BGC D:6BINDING SITE FOR RESIDUE GAL D 5
36DC9SOFTWAREGAL D:5BINDING SITE FOR RESIDUE BGC D 6
37EC1SOFTWARETHR G:344 , ARG G:345 , ASP G:374 , GAL J:2 , NAG J:3 , FUC J:4 , SER J:442 , GLY J:443BINDING SITE FOR RESIDUE FUC J 1
38EC2SOFTWAREFUC J:1 , NAG J:3 , FUC J:4 , SER J:442BINDING SITE FOR RESIDUE GAL J 2
39EC3SOFTWAREFUC J:1 , GAL J:2 , FUC J:4 , GAL J:5BINDING SITE FOR RESIDUE NAG J 3
40EC4SOFTWAREFUC J:1 , GAL J:2 , NAG J:3 , GLN J:390 , ASP J:391 , GLY J:392 , SER J:442 , GLY J:443BINDING SITE FOR RESIDUE FUC J 4
41EC5SOFTWARENAG J:3 , BGC J:6BINDING SITE FOR RESIDUE GAL J 5
42EC6SOFTWAREGAL J:5BINDING SITE FOR RESIDUE BGC J 6
43EC7SOFTWAREGAL G:2 , NAG G:3 , FUC G:4 , SER G:442 , GLY G:443 , THR J:344 , ARG J:345 , ASP J:374BINDING SITE FOR RESIDUE FUC G 1
44EC8SOFTWAREFUC G:1 , NAG G:3 , FUC G:4 , SER G:442BINDING SITE FOR RESIDUE GAL G 2
45EC9SOFTWAREFUC G:1 , GAL G:2 , FUC G:4 , GAL G:5 , GLY G:392BINDING SITE FOR RESIDUE NAG G 3
46FC1SOFTWAREFUC G:1 , GAL G:2 , NAG G:3 , ASP G:391 , GLY G:392 , SER G:393BINDING SITE FOR RESIDUE FUC G 4
47FC2SOFTWAREHIS F:414 , NAG G:3 , BGC G:6BINDING SITE FOR RESIDUE GAL G 5
48FC3SOFTWAREGLN F:260 , GAL G:5 , ALA G:256BINDING SITE FOR RESIDUE BGC G 6

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SEJ)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Glu A:399 -Pro A:400
2Glu B:399 -Pro B:400
3Glu C:399 -Pro C:400
4Glu D:399 -Pro D:400
5Glu E:399 -Pro E:400
6Glu F:399 -Pro F:400
7Glu G:399 -Pro G:400
8Glu H:399 -Pro H:400
9Thr I:337 -Thr I:338
10Glu J:399 -Pro J:400

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SEJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SEJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3SEJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:309
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:309
                                   232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522         
         Q5EGK8_9CALI   223 RTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................eeee..................................eeeeeee.....eeeeee.........................eeeeeeeeee....eeeeeeeeee......hhhh.eeeeee...........eeeeeeeee.......................................eeeeeeeee..eeee....eeee..hhhhhhhhhhhh......eeeeeeee....eeeeeeeee...eeeee....ee.......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej A 223 RTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
                                   232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522         


Chain B from PDB  Type:PROTEIN  Length:307
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:307
                                   233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       
         Q5EGK8_9CALI   224 TKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM 530
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeeee.................................eeeeeeee....eeeeee.........................eeeeeeeee......eeeeeeeee......hhhh.eeeeee...........eeeeeeeee.......................................eeeeeeeee..eeee....eeee..hhhhhhhhhhhh......eeeeeee......eeeeeeee...eeeee....ee.......eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej B 224 TKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM 530
                                   233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       


Chain C from PDB  Type:PROTEIN  Length:311
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:311
                                   230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530 
         Q5EGK8_9CALI   221 ESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee........hhhhh..........eeee..................................eeeeeee.....eeeeee.........................eeeeeeeee......eeeeeeeee......hhhh.eeeeee..........eeeeeeeeee.......................................eeeeeeeee..eeee....eeee..hhhhhhhhhhhh......eeeeeee......eeeeeeee....eeee....ee.......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej C 221 ESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
                                   230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530 


Chain D from PDB  Type:PROTEIN  Length:307
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:307
                                   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       
         Q5EGK8_9CALI   225 KPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..........eeeee.................................eeeeeee.....eeeeee.........................eeeeeeeeee....eeeeeeeeee......hhhh.eeeeee...........eeeeeeeee.......................................eeeeeeeee..eee.....eeee..hhhhhhhhhhhh......eeeeeeee....eeeeeeeee....eeee....ee.......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej D 225 KPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
                                   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       


Chain E from PDB  Type:PROTEIN  Length:309
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:309
                                   231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521         
         Q5EGK8_9CALI   222 SRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM 530
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................eeeee.................................eeeeeeee....eeeeee.........................eeeeeeeee......eeeeeeeee......hhhh.eeeeee...........eeeeeeeee.......................................eeeeeeeee..eeee....eeee..hhhhhhhhhhhh......eeeeeee......eeeeeeee...eeeee....ee.......eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej E 222 SRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM 530
                                   231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521         


Chain F from PDB  Type:PROTEIN  Length:308
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:308
                                   233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523        
         Q5EGK8_9CALI   224 TKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeee..................................eeeeeee.....eeeeee.........................eeeeeeeee......eeeeeeeee......hhhh.eeeeee..........eeeeeeeeee.......................................eeeeeeeee..eeee....eeee..hhhhhhhhhhhh......eeeeeeee....eeeeeeeee...eeeee....ee.......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej F 224 TKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
                                   233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523        


Chain G from PDB  Type:PROTEIN  Length:308
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:308
                                   233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523        
         Q5EGK8_9CALI   224 TKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeeee.................................eeeeeee.....eeeeee.........................eeeeeeeee......eeeeeeeee......hhhh.eeeeee...........eeeeeeeee.......................................eeeeeeeee..eee.....eeee..hhhhhhhhhhhh......eeeeeee......eeeeeeee....eeee....ee.......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej G 224 TKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
                                   233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523        


Chain H from PDB  Type:PROTEIN  Length:300
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:311
                                   230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530 
         Q5EGK8_9CALI   221 ESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhh..........eeeee..................ee.............eeeeeee.....eeeeee.........................eeeeeeeeee.....eeeeeeeee......hhhh.eeeeee...........eeeeeeee...-------..............................eeeeeeeee.....----.eeee..hhhhhhhhhhhh......eeeeeee......eeeeeeee...eeeee....ee.......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej H 221 ESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQD-------EPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCS----MNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
                                   230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390|      400       410       420       430       440 |    |450       460       470       480       490       500       510       520       530 
                                                                                                                                                                                                    391     399                                        442  447                                                                                    


Chain I from PDB  Type:PROTEIN  Length:284
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:310
                                   230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530
         Q5EGK8_9CALI   221 ESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM 530
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........................eeee..................................eeeee.......eeeee.-........................eeeeeee...........eeeeee......hhhh.eeeee.-----......eeeeeee.-------------...........................eeeeeeee....-------.eee..hhhhhhhhhhhh......eeeeeee......eeeeeeee...eeeee....ee.......eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej I 221 ESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNL-SQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFST-----FETGQNTRFTPVGV-------------QWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPG-------NLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPM 530
                                   230       240       250       260       270       280       290       300  | |  310       320       330       340       350       360        |-    |  380       | -         - |     410       420       430       440       450       460       470       480       490       500       510       520       530
                                                                                                            303 |                                                             369   375          388           402                                   440     448                                                                                  
                                                                                                              305                                                                                                                                                                                                                                 


Chain J from PDB  Type:PROTEIN  Length:307
 aligned with Q5EGK8_9CALI | Q5EGK8 from UniProtKB/TrEMBL  Length:540

    Alignment length:307
                                   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       
         Q5EGK8_9CALI   225 KPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTTQLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..........eeeee.................................eeeeeee.....eeeeee.........................eeeeeeeee.hhhh.eeeeeeeee...........eeeeee...........eeeeeeeee.......................................eeeeeeeee..eeee....eeee..hhhhhhhhhhhh......eeeeeee......eeeeeeee....eeee....ee.......eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sej J 225 KPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGALLGTTQLSPVDICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVLTQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDGSTTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDCLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLVIPPNGYFRFDSWVNQFYTLAPMG 531
                                   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SEJ)

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(no "CATH Domain" information available for 3SEJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SEJ)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (Q5EGK8_9CALI | Q5EGK8)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

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UniProtKB/TrEMBL
        Q5EGK8_9CALI | Q5EGK8: 3sjp 3skb 3sld 3sln

(-) Related Entries Specified in the PDB File

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