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3SEJ
Asym. Unit
Info
Asym.Unit (1015 KB)
Biol.Unit 1 (208 KB)
Biol.Unit 2 (208 KB)
Biol.Unit 3 (210 KB)
Biol.Unit 4 (207 KB)
Biol.Unit 5 (104 KB)
Biol.Unit 6 (97 KB)
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(1)
Title
:
STRUCTURAL CHARACTERIZATION OF A GII.4 2004 NOROVIRUS VARIANT (TCH05) BOUND TO SECRETOR LEWIS HBGA (LEB)
Authors
:
S. Shanker, J. -M. Choi, B. Sankaran, R. L. Atmar, M. K. Estes, B. V. V. Pra
Date
:
10 Jun 11 (Deposition) - 13 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.04
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: D,F (1x)
Biol. Unit 4: G,J (1x)
Biol. Unit 5: H (1x)
Biol. Unit 6: I (1x)
Keywords
:
Protein-Carbohydrate Complex, Leb Bound, Receptor Binding, Human Blood Group Antigens, Carbohydrate/Sugar Binding, Lewis Family, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Shanker, J. M. Choi, B. Sankaran, R. L. Atmar, M. K. Estes, B. V. Prasa
Structural Analysis Of Histo-Blood Group Antigen Binding Specificity In A Norovirus Gii. 4 Epidemic Variant: Implications For Epochal Evolution.
J. Virol. V. 85 8635 2011
[
close entry info
]
Hetero Components
(4, 48)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
2g: ALPHA-L-FUCOSE (FUCg)
2h: ALPHA-L-FUCOSE (FUCh)
2i: ALPHA-L-FUCOSE (FUCi)
2j: ALPHA-L-FUCOSE (FUCj)
2k: ALPHA-L-FUCOSE (FUCk)
2l: ALPHA-L-FUCOSE (FUCl)
2m: ALPHA-L-FUCOSE (FUCm)
2n: ALPHA-L-FUCOSE (FUCn)
2o: ALPHA-L-FUCOSE (FUCo)
2p: ALPHA-L-FUCOSE (FUCp)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
3d: BETA-D-GALACTOSE (GALd)
3e: BETA-D-GALACTOSE (GALe)
3f: BETA-D-GALACTOSE (GALf)
3g: BETA-D-GALACTOSE (GALg)
3h: BETA-D-GALACTOSE (GALh)
3i: BETA-D-GALACTOSE (GALi)
3j: BETA-D-GALACTOSE (GALj)
3k: BETA-D-GALACTOSE (GALk)
3l: BETA-D-GALACTOSE (GALl)
3m: BETA-D-GALACTOSE (GALm)
3n: BETA-D-GALACTOSE (GALn)
3o: BETA-D-GALACTOSE (GALo)
3p: BETA-D-GALACTOSE (GALp)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
8
Ligand/Ion
BETA-D-GLUCOSE
2
FUC
16
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
16
Ligand/Ion
BETA-D-GALACTOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:344 , ARG A:345 , ASP A:374 , GAL C:2 , NAG C:3 , SER C:442 , GLY C:443
BINDING SITE FOR RESIDUE FUC C 1
02
AC2
SOFTWARE
FUC C:1 , NAG C:3 , FUC C:4 , SER C:442
BINDING SITE FOR RESIDUE GAL C 2
03
AC3
SOFTWARE
FUC C:1 , GAL C:2 , FUC C:4 , GAL C:5 , HOH C:552
BINDING SITE FOR RESIDUE NAG C 3
04
AC4
SOFTWARE
GAL C:2 , NAG C:3 , GLN C:390 , ASP C:391 , GLY C:392 , SER C:393
BINDING SITE FOR RESIDUE FUC C 4
05
AC5
SOFTWARE
NAG C:3 , BGC C:6
BINDING SITE FOR RESIDUE GAL C 5
06
AC6
SOFTWARE
GAL C:5
BINDING SITE FOR RESIDUE BGC C 6
07
AC7
SOFTWARE
SER B:343 , THR B:344 , ARG B:345 , ASP B:374 , GAL E:2 , NAG E:3 , FUC E:4 , SER E:442 , GLY E:443
BINDING SITE FOR RESIDUE FUC E 1
08
AC8
SOFTWARE
FUC E:1 , NAG E:3 , FUC E:4 , SER E:442
BINDING SITE FOR RESIDUE GAL E 2
09
AC9
SOFTWARE
FUC E:1 , GAL E:2 , FUC E:4 , GAL E:5 , GLY E:392
BINDING SITE FOR RESIDUE NAG E 3
10
BC1
SOFTWARE
FUC E:1 , GAL E:2 , NAG E:3 , GLN E:390 , ASP E:391 , GLY E:392 , SER E:393 , SER E:442 , GLY E:443
BINDING SITE FOR RESIDUE FUC E 4
11
BC2
SOFTWARE
NAG E:3 , BGC E:6
BINDING SITE FOR RESIDUE GAL E 5
12
BC3
SOFTWARE
PRO C:253 , GLN C:504 , GAL E:5
BINDING SITE FOR RESIDUE BGC E 6
13
BC4
SOFTWARE
SER A:442 , GLY A:443 , SER C:343 , THR C:344 , ARG C:345 , ASP C:374 , GAL C:533 , NAG C:534 , FUC C:535
BINDING SITE FOR RESIDUE FUC C 532
14
BC5
SOFTWARE
SER A:442 , FUC C:532 , NAG C:534 , FUC C:535
BINDING SITE FOR RESIDUE GAL C 533
15
BC6
SOFTWARE
FUC C:532 , GAL C:533 , FUC C:535 , GAL C:536
BINDING SITE FOR RESIDUE NAG C 534
16
BC7
SOFTWARE
ASP A:391 , GLY A:392 , SER A:393 , FUC C:532 , GAL C:533 , NAG C:534
BINDING SITE FOR RESIDUE FUC C 535
17
BC8
SOFTWARE
NAG C:534 , BGC C:537
BINDING SITE FOR RESIDUE GAL C 536
18
BC9
SOFTWARE
GAL C:536
BINDING SITE FOR RESIDUE BGC C 537
19
CC1
SOFTWARE
SER D:343 , THR D:344 , ARG D:345 , ASP D:374 , GAL F:2 , NAG F:3 , FUC F:4 , GLY F:443 , TYR F:444
BINDING SITE FOR RESIDUE FUC F 1
20
CC2
SOFTWARE
FUC F:1 , NAG F:3 , FUC F:4 , SER F:442
BINDING SITE FOR RESIDUE GAL F 2
21
CC3
SOFTWARE
FUC F:1 , GAL F:2 , FUC F:4 , GAL F:5 , BGC F:6
BINDING SITE FOR RESIDUE NAG F 3
22
CC4
SOFTWARE
FUC F:1 , GAL F:2 , NAG F:3 , GLN F:390 , ASP F:391 , GLY F:392 , SER F:393 , GLY F:443
BINDING SITE FOR RESIDUE FUC F 4
23
CC5
SOFTWARE
NAG F:3 , BGC F:6
BINDING SITE FOR RESIDUE GAL F 5
24
CC6
SOFTWARE
NAG F:3 , GAL F:5 , HOH F:533
BINDING SITE FOR RESIDUE BGC F 6
25
CC7
SOFTWARE
GAL B:2 , NAG B:3 , FUC B:4 , SER B:442 , GLY B:443 , THR E:344 , ARG E:345 , ASP E:374
BINDING SITE FOR RESIDUE FUC B 1
26
CC8
SOFTWARE
FUC B:1 , NAG B:3 , FUC B:4 , SER B:442
BINDING SITE FOR RESIDUE GAL B 2
27
CC9
SOFTWARE
FUC B:1 , GAL B:2 , FUC B:4 , GAL B:5
BINDING SITE FOR RESIDUE NAG B 3
28
DC1
SOFTWARE
FUC B:1 , GAL B:2 , NAG B:3 , ASP B:391 , GLY B:392 , SER B:393 , SER B:442
BINDING SITE FOR RESIDUE FUC B 4
29
DC2
SOFTWARE
NAG B:3 , BGC B:6
BINDING SITE FOR RESIDUE GAL B 5
30
DC3
SOFTWARE
GAL B:5
BINDING SITE FOR RESIDUE BGC B 6
31
DC4
SOFTWARE
GAL D:2 , FUC D:4 , SER D:442 , GLY D:443 , THR F:344 , ARG F:345 , ASP F:374
BINDING SITE FOR RESIDUE FUC D 1
32
DC5
SOFTWARE
FUC D:1 , NAG D:3 , FUC D:4 , SER D:442
BINDING SITE FOR RESIDUE GAL D 2
33
DC6
SOFTWARE
GAL D:2 , FUC D:4 , GAL D:5
BINDING SITE FOR RESIDUE NAG D 3
34
DC7
SOFTWARE
FUC D:1 , GAL D:2 , NAG D:3 , GLN D:390 , ASP D:391 , GLY D:392 , SER D:393 , SER D:442 , GLY D:443
BINDING SITE FOR RESIDUE FUC D 4
35
DC8
SOFTWARE
NAG D:3 , BGC D:6
BINDING SITE FOR RESIDUE GAL D 5
36
DC9
SOFTWARE
GAL D:5
BINDING SITE FOR RESIDUE BGC D 6
37
EC1
SOFTWARE
THR G:344 , ARG G:345 , ASP G:374 , GAL J:2 , NAG J:3 , FUC J:4 , SER J:442 , GLY J:443
BINDING SITE FOR RESIDUE FUC J 1
38
EC2
SOFTWARE
FUC J:1 , NAG J:3 , FUC J:4 , SER J:442
BINDING SITE FOR RESIDUE GAL J 2
39
EC3
SOFTWARE
FUC J:1 , GAL J:2 , FUC J:4 , GAL J:5
BINDING SITE FOR RESIDUE NAG J 3
40
EC4
SOFTWARE
FUC J:1 , GAL J:2 , NAG J:3 , GLN J:390 , ASP J:391 , GLY J:392 , SER J:442 , GLY J:443
BINDING SITE FOR RESIDUE FUC J 4
41
EC5
SOFTWARE
NAG J:3 , BGC J:6
BINDING SITE FOR RESIDUE GAL J 5
42
EC6
SOFTWARE
GAL J:5
BINDING SITE FOR RESIDUE BGC J 6
43
EC7
SOFTWARE
GAL G:2 , NAG G:3 , FUC G:4 , SER G:442 , GLY G:443 , THR J:344 , ARG J:345 , ASP J:374
BINDING SITE FOR RESIDUE FUC G 1
44
EC8
SOFTWARE
FUC G:1 , NAG G:3 , FUC G:4 , SER G:442
BINDING SITE FOR RESIDUE GAL G 2
45
EC9
SOFTWARE
FUC G:1 , GAL G:2 , FUC G:4 , GAL G:5 , GLY G:392
BINDING SITE FOR RESIDUE NAG G 3
46
FC1
SOFTWARE
FUC G:1 , GAL G:2 , NAG G:3 , ASP G:391 , GLY G:392 , SER G:393
BINDING SITE FOR RESIDUE FUC G 4
47
FC2
SOFTWARE
HIS F:414 , NAG G:3 , BGC G:6
BINDING SITE FOR RESIDUE GAL G 5
48
FC3
SOFTWARE
GLN F:260 , GAL G:5 , ALA G:256
BINDING SITE FOR RESIDUE BGC G 6
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1015 KB)
Header - Asym.Unit
Biol.Unit 1 (208 KB)
Header - Biol.Unit 1
Biol.Unit 2 (208 KB)
Header - Biol.Unit 2
Biol.Unit 3 (210 KB)
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Biol.Unit 4 (207 KB)
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Biol.Unit 5 (104 KB)
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