3R7C - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   THE STRUCTURE OF A HEXAHESTIDINE-TAGGED FORM OF AUGMENTER OF LIVER REGENERATION REVEALS A NOVEL CD(2)CL(4)O(6) CLUSTER THAT AIDS IN CRYSTAL PACKING

Authors :   Q. J Florence, C. -K. Wu, J. T. Swindell Ii, B. C. Wang, J. P. Rose

Date :   22 Mar 11 (Deposition) - 28 Mar 12 (Release) - 28 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: A,B,D  (1x)
Biol. Unit 3: A,B,C,D  (1x)

Keywords :   Novel Cd(2)Cl(4)O(6) Cluster, Four-Helical Up-And-Down Bundle, All- Helical Fad Binding Motif, Fad-Linked Sulfhydryl Oxidase, Liver Regeneration, Fad Binding, Mitochondrial Intermembrane Space, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. J. Florence, C. -K. Wu, J. E. Habel, J. T. Swindell Ii, B. C. Wang, J. P. Rose
The Structure Of A Hexahestidine-Tagged Form Of Augmenter O Liver Regeneration Reveals A Novel Cd(2)Cl(4)O(6) Cluster That Aids In Crystal Packing
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - FAD-LINKED SULFHYDRYL OXIDASE ALR
	Chains	:	A, B, C, D
	EC Number	:	1.8.3.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHRALR
	Expression System Strain	:	JM109
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 74-198
	Gene	:	ALR, GFER, GFER (ALR)
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	AUGMENTER OF LIVER REGENERATION

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:	A	B		D
Biological Unit 3 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 21)

No.	Name	Count	Type	Full Name
1	CD	5	Ligand/Ion	CADMIUM ION
2	CL	10	Ligand/Ion	CHLORIDE ION
3	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
4	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 5)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FAD	3	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 6)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
4	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:19 , GLU A:20 , GLY A:23 , ARG A:24 , TRP A:27 , HIS A:31 , TYR A:60 , CYS A:62 , CYS A:65 , ALA A:66 , GLU A:67 , CYS A:91 , HIS A:94 , ASN A:95 , VAL A:97 , ASN A:98 , LEU A:101 , LYS A:103 , PHE A:106 , ARG A:114 , TRP A:115 , HOH A:141 , HOH A:143 , HOH A:156 , HOH A:162 , HOH A:165 , HOH A:171 , HOH A:189 , ASP C:14 , HOH C:144	BINDING SITE FOR RESIDUE FAD A 126
02	AC2	SOFTWARE	GLU A:44 , GLN A:47 , HOH A:168 , HOH A:223 , HOH B:222	BINDING SITE FOR RESIDUE CL A 130
03	AC3	SOFTWARE	GLU A:44 , ASP A:48 , ARG B:75 , LYS C:58 , HOH C:150	BINDING SITE FOR RESIDUE CL A 131
04	AC4	SOFTWARE	ARG B:19 , GLU B:20 , GLY B:23 , ARG B:24 , TRP B:27 , HIS B:31 , TYR B:60 , CYS B:62 , CYS B:65 , ALA B:66 , GLU B:67 , CYS B:91 , HIS B:94 , ASN B:95 , VAL B:97 , ASN B:98 , LEU B:101 , LYS B:103 , PHE B:106 , ARG B:114 , TRP B:115 , HOH B:135 , HOH B:144 , HOH B:151 , HOH B:163 , HOH B:172 , HOH B:173 , HOH B:179 , HOH B:181 , HOH B:190	BINDING SITE FOR RESIDUE FAD B 126
05	AC5	SOFTWARE	GLU B:113 , HOH B:138 , HOH B:139 , HOH D:137	BINDING SITE FOR RESIDUE CD B 130
06	AC6	SOFTWARE	HOH A:133 , HOH A:199 , GLU B:44 , GLN B:47 , HOH B:141	BINDING SITE FOR RESIDUE CD B 131
07	AC7	SOFTWARE	CYS B:15 , GLN B:17 , HOH B:174 , HOH B:185	BINDING SITE FOR RESIDUE CL B 132
08	AC8	SOFTWARE	ARG B:92	BINDING SITE FOR RESIDUE CL B 133
09	AC9	SOFTWARE	GLU C:20 , GLY C:23 , ARG C:24 , TRP C:27 , HIS C:31 , TYR C:60 , CYS C:65 , ILE C:69 , CYS C:91 , HIS C:94 , ASN C:95 , VAL C:97 , ASN C:98 , LYS C:100 , LEU C:101 , LYS C:103 , PHE C:106 , VAL C:111 , ARG C:114 , TRP C:115 , HOH C:145	BINDING SITE FOR RESIDUE FAD C 126
10	BC1	SOFTWARE	ASP C:107 , SER C:109 , HOH C:129 , HOH C:131	BINDING SITE FOR RESIDUE CD C 127
11	BC2	SOFTWARE	GLN C:17 , ASN C:25	BINDING SITE FOR RESIDUE CL C 128
12	BC3	SOFTWARE	ARG D:19 , GLU D:20 , GLY D:23 , ARG D:24 , TRP D:27 , HIS D:31 , TYR D:60 , CYS D:65 , ALA D:66 , GLU D:67 , ILE D:69 , CYS D:91 , HIS D:94 , ASN D:95 , VAL D:97 , ASN D:98 , LEU D:101 , LYS D:103 , PHE D:106 , ARG D:114 , TRP D:115 , HOH D:130 , HOH D:138 , HOH D:187	BINDING SITE FOR RESIDUE FAD D 126
13	BC4	SOFTWARE	ASP B:105 , ASP D:112 , HOH D:173	BINDING SITE FOR RESIDUE SO4 D 127
14	BC5	SOFTWARE	GLU D:21 , HOH D:148	BINDING SITE FOR RESIDUE CL D 128
15	BC6	SOFTWARE	GLN D:17 , ASN D:25	BINDING SITE FOR RESIDUE SO4 D 129
16	BC7	SOFTWARE	ASP A:74 , CL A:502 , CL A:503 , CL A:504 , HOH A:506	BINDING SITE FOR RESIDUE CD A 500
17	BC8	SOFTWARE	CL A:502 , CL A:503 , CL A:505 , HOH A:507 , ASP B:74	BINDING SITE FOR RESIDUE CD A 501
18	BC9	SOFTWARE	HIS A:54 , LYS A:58 , CD A:500 , CD A:501 , CL A:503 , ASP B:74	BINDING SITE FOR RESIDUE CL A 502
19	CC1	SOFTWARE	ASP A:74 , CD A:500 , CD A:501 , CL A:502 , HIS B:54 , LYS B:58	BINDING SITE FOR RESIDUE CL A 503
20	CC2	SOFTWARE	LYS A:58 , ARG A:70 , CD A:500 , LYS B:58	BINDING SITE FOR RESIDUE CL A 504
21	CC3	SOFTWARE	LYS A:58 , CD A:501 , ARG B:70 , ASP B:74	BINDING SITE FOR RESIDUE CL A 505

Asymmetric Unit

No.	Residues
1	A:15	-	C:124
2	A:62	-	A:65
3	A:91	-	A:108
4	A:124	-	C:15
5	B:15	-	D:124
6	B:62	-	B:65
7	B:91	-	B:108
8	B:124	-	D:15
9	C:62	-	C:65
10	C:91	-	C:108
11	D:62	-	D:65
12	D:91	-	D:108

Asymmetric Unit

No.	Residues
1	Glu B:63	-	Glu B:64

(no "SAP(SNP)/Variant" information available for 3R7C)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ERV_ALR	PS51324	ERV/ALR sulfhydryl oxidase domain profile.	ALR_RAT	88-188	4	A:15-115 B:15-115 C:15-115 D:15-115

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ERV_ALR	PS51324	ERV/ALR sulfhydryl oxidase domain profile.	ALR_RAT	88-188	2	A:15-115 - C:15-115 -

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ERV_ALR	PS51324	ERV/ALR sulfhydryl oxidase domain profile.	ALR_RAT	88-188	3	A:15-115 B:15-115 - D:15-115

Biological Unit 3 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ERV_ALR	PS51324	ERV/ALR sulfhydryl oxidase domain profile.	ALR_RAT	88-188	4	A:15-115 B:15-115 C:15-115 D:15-115

Asymmetric Unit (2, 8)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000017917	1	ENSRNOE00000127312	chr10:13948665-13948348	318	ALR_RAT	1-79	79	0	-	-
1.2	ENSRNOT00000017917	2	ENSRNOE00000127401	chr10:13947976-13947780	197	ALR_RAT	80-145	66	4	A:14-72 B:14-72 C:14-72 D:14-72	59 59 59 59
1.3	ENSRNOT00000017917	3	ENSRNOE00000127645	chr10:13947020-13946311	710	ALR_RAT	145-198	54	4	A:72-124 B:72-124 C:72-124 D:72-124	53 53 53 53

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:111
 aligned with ALR_RAT | Q63042 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:111
                                    96       106       116       126       136       146       156       166       176       186       196 
              ALR_RAT    87 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 197
               SCOP domains d3r7ca_ A: automated matches                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -ERV_ALR  PDB: A:15-115 UniProt: 88-188                                                               --------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:14-72 UniProt: 80-145 [INCOMPLETE]        ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------Exon 1.3  PDB: A:72-124 UniProt: 145-198 [INCOMPLETE] Transcript 1 (2)
                 3r7c A  14 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 124
                                    23        33        43        53        63        73        83        93       103       113       123

Chain B from PDB  Type:PROTEIN  Length:111
 aligned with ALR_RAT | Q63042 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:111
                                    96       106       116       126       136       146       156       166       176       186       196 
              ALR_RAT    87 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 197
               SCOP domains d3r7cb_ B: automated matches                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -ERV_ALR  PDB: B:15-115 UniProt: 88-188                                                               --------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:14-72 UniProt: 80-145 [INCOMPLETE]        ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------Exon 1.3  PDB: B:72-124 UniProt: 145-198 [INCOMPLETE] Transcript 1 (2)
                 3r7c B  14 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 124
                                    23        33        43        53        63        73        83        93       103       113       123

Chain C from PDB  Type:PROTEIN  Length:111
 aligned with ALR_RAT | Q63042 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:111
                                    96       106       116       126       136       146       156       166       176       186       196 
              ALR_RAT    87 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 197
               SCOP domains d3r7cc_ C: automated matches                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -ERV_ALR  PDB: C:15-115 UniProt: 88-188                                                               --------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:14-72 UniProt: 80-145 [INCOMPLETE]        ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------Exon 1.3  PDB: C:72-124 UniProt: 145-198 [INCOMPLETE] Transcript 1 (2)
                 3r7c C  14 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 124
                                    23        33        43        53        63        73        83        93       103       113       123

Chain D from PDB  Type:PROTEIN  Length:111
 aligned with ALR_RAT | Q63042 from UniProtKB/Swiss-Prot  Length:198

    Alignment length:111
                                    96       106       116       126       136       146       156       166       176       186       196 
              ALR_RAT    87 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 197
               SCOP domains d3r7cd_ D: automated matches                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhh........hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -ERV_ALR  PDB: D:15-115 UniProt: 88-188                                                               --------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:14-72 UniProt: 80-145 [INCOMPLETE]        ---------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------Exon 1.3  PDB: D:72-124 UniProt: 145-198 [INCOMPLETE] Transcript 1 (2)
                 3r7c D  14 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGSC 124
                                    23        33        43        53        63        73        83        93       103       113       123

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: All alpha proteins (14657)

Fold: Four-helical up-and-down bundle (308)

Superfamily: FAD-dependent thiol oxidase (15)

Family: FAD-dependent thiol oxidase (10)

Protein domain: automated matches (1)

Norway rat (Rattus norvegicus) [TaxId: 10116] (1)

1a	d3r7ca_	A:
1b	d3r7cb_	B:
1c	d3r7cc_	C:
1d	d3r7cd_	D:

(no "CATH Domain" information available for 3R7C)

(no "Pfam Domain" information available for 3R7C)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ALR_RAT | Q63042)

molecular function
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016971	flavin-linked sulfhydryl oxidase activity	Catalysis of the formation of disulfide bridges.
	GO:0008083	growth factor activity	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0015035	protein disulfide oxidoreductase activity	Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
	GO:0016972	thiol oxidase activity	Catalysis of the reaction: 4 R'C(R)SH + O2 = 2 R'C(R)S-S(R)CR' + 2 H2O.
biological process
	GO:0072717	cellular response to actinomycin D	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an actinomycin D stimulus.
	GO:0071222	cellular response to lipopolysaccharide	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
	GO:0097237	cellular response to toxic substance	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
	GO:0071356	cellular response to tumor necrosis factor	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus.
	GO:0097421	liver regeneration	The regrowth of lost or destroyed liver.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0045953	negative regulation of natural killer cell mediated cytotoxicity	Any process that stops, prevents, or reduces the rate of natural killer mediated cytotoxicity.
	GO:1903204	negative regulation of oxidative stress-induced neuron death	Any process that stops, prevents or reduces the frequency, rate or extent of oxidative stress-induced neuron death.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:2000573	positive regulation of DNA biosynthetic process	Any process that activates or increases the frequency, rate or extent of DNA biosynthetic process.
	GO:0032496	response to lipopolysaccharide	Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005758	mitochondrial intermembrane space	The region between the inner and outer lipid bilayers of the mitochondrial envelope.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric Unit
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	Cis Peptide Bonds
		Glu B:63 - Glu B:64	[ RasMol ]

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Access by PDB/NDB ID
	3r7c
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
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	ALR_RAT \| Q63042
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	1.8.3.2
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	ALR_RAT \| Q63042
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UniProtKB/Swiss-Prot
	ALR_RAT \| Q63042	:	1oqc

1oqc	THE NATIVE ALR CRYSTAL STRUCTURE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 21)

Sites (21, 21)

SS Bonds (12, 12)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (2, 8)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (22, 22)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File