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3R7C
Biol. Unit 3
Info
Asym.Unit (171 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (121 KB)
Biol.Unit 3 (160 KB)
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(1)
Title
:
THE STRUCTURE OF A HEXAHESTIDINE-TAGGED FORM OF AUGMENTER OF LIVER REGENERATION REVEALS A NOVEL CD(2)CL(4)O(6) CLUSTER THAT AIDS IN CRYSTAL PACKING
Authors
:
Q. J Florence, C. -K. Wu, J. T. Swindell Ii, B. C. Wang, J. P. Rose
Date
:
22 Mar 11 (Deposition) - 28 Mar 12 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: A,B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Novel Cd(2)Cl(4)O(6) Cluster, Four-Helical Up-And-Down Bundle, All- Helical Fad Binding Motif, Fad-Linked Sulfhydryl Oxidase, Liver Regeneration, Fad Binding, Mitochondrial Intermembrane Space, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. J. Florence, C. -K. Wu, J. E. Habel, J. T. Swindell Ii, B. C. Wang, J. P. Rose
The Structure Of A Hexahestidine-Tagged Form Of Augmenter O Liver Regeneration Reveals A Novel Cd(2)Cl(4)O(6) Cluster That Aids In Crystal Packing
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
3d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:19 , GLU A:20 , GLY A:23 , ARG A:24 , TRP A:27 , HIS A:31 , TYR A:60 , CYS A:62 , CYS A:65 , ALA A:66 , GLU A:67 , CYS A:91 , HIS A:94 , ASN A:95 , VAL A:97 , ASN A:98 , LEU A:101 , LYS A:103 , PHE A:106 , ARG A:114 , TRP A:115 , HOH A:141 , HOH A:143 , HOH A:156 , HOH A:162 , HOH A:165 , HOH A:171 , HOH A:189 , ASP C:14 , HOH C:144
BINDING SITE FOR RESIDUE FAD A 126
02
AC2
SOFTWARE
GLU A:44 , GLN A:47 , HOH A:168 , HOH A:223 , HOH B:222
BINDING SITE FOR RESIDUE CL A 130
03
AC3
SOFTWARE
GLU A:44 , ASP A:48 , ARG B:75 , LYS C:58 , HOH C:150
BINDING SITE FOR RESIDUE CL A 131
04
AC4
SOFTWARE
ARG B:19 , GLU B:20 , GLY B:23 , ARG B:24 , TRP B:27 , HIS B:31 , TYR B:60 , CYS B:62 , CYS B:65 , ALA B:66 , GLU B:67 , CYS B:91 , HIS B:94 , ASN B:95 , VAL B:97 , ASN B:98 , LEU B:101 , LYS B:103 , PHE B:106 , ARG B:114 , TRP B:115 , HOH B:135 , HOH B:144 , HOH B:151 , HOH B:163 , HOH B:172 , HOH B:173 , HOH B:179 , HOH B:181 , HOH B:190
BINDING SITE FOR RESIDUE FAD B 126
05
AC5
SOFTWARE
GLU B:113 , HOH B:138 , HOH B:139 , HOH D:137
BINDING SITE FOR RESIDUE CD B 130
06
AC6
SOFTWARE
HOH A:133 , HOH A:199 , GLU B:44 , GLN B:47 , HOH B:141
BINDING SITE FOR RESIDUE CD B 131
07
AC7
SOFTWARE
CYS B:15 , GLN B:17 , HOH B:174 , HOH B:185
BINDING SITE FOR RESIDUE CL B 132
08
AC8
SOFTWARE
ARG B:92
BINDING SITE FOR RESIDUE CL B 133
09
AC9
SOFTWARE
GLU C:20 , GLY C:23 , ARG C:24 , TRP C:27 , HIS C:31 , TYR C:60 , CYS C:65 , ILE C:69 , CYS C:91 , HIS C:94 , ASN C:95 , VAL C:97 , ASN C:98 , LYS C:100 , LEU C:101 , LYS C:103 , PHE C:106 , VAL C:111 , ARG C:114 , TRP C:115 , HOH C:145
BINDING SITE FOR RESIDUE FAD C 126
10
BC1
SOFTWARE
ASP C:107 , SER C:109 , HOH C:129 , HOH C:131
BINDING SITE FOR RESIDUE CD C 127
11
BC2
SOFTWARE
GLN C:17 , ASN C:25
BINDING SITE FOR RESIDUE CL C 128
12
BC3
SOFTWARE
ARG D:19 , GLU D:20 , GLY D:23 , ARG D:24 , TRP D:27 , HIS D:31 , TYR D:60 , CYS D:65 , ALA D:66 , GLU D:67 , ILE D:69 , CYS D:91 , HIS D:94 , ASN D:95 , VAL D:97 , ASN D:98 , LEU D:101 , LYS D:103 , PHE D:106 , ARG D:114 , TRP D:115 , HOH D:130 , HOH D:138 , HOH D:187
BINDING SITE FOR RESIDUE FAD D 126
13
BC4
SOFTWARE
ASP B:105 , ASP D:112 , HOH D:173
BINDING SITE FOR RESIDUE SO4 D 127
14
BC5
SOFTWARE
GLU D:21 , HOH D:148
BINDING SITE FOR RESIDUE CL D 128
15
BC6
SOFTWARE
GLN D:17 , ASN D:25
BINDING SITE FOR RESIDUE SO4 D 129
16
BC7
SOFTWARE
ASP A:74 , CL A:502 , CL A:503 , CL A:504 , HOH A:506
BINDING SITE FOR RESIDUE CD A 500
17
BC8
SOFTWARE
CL A:502 , CL A:503 , CL A:505 , HOH A:507 , ASP B:74
BINDING SITE FOR RESIDUE CD A 501
18
BC9
SOFTWARE
HIS A:54 , LYS A:58 , CD A:500 , CD A:501 , CL A:503 , ASP B:74
BINDING SITE FOR RESIDUE CL A 502
19
CC1
SOFTWARE
ASP A:74 , CD A:500 , CD A:501 , CL A:502 , HIS B:54 , LYS B:58
BINDING SITE FOR RESIDUE CL A 503
20
CC2
SOFTWARE
LYS A:58 , ARG A:70 , CD A:500 , LYS B:58
BINDING SITE FOR RESIDUE CL A 504
21
CC3
SOFTWARE
LYS A:58 , CD A:501 , ARG B:70 , ASP B:74
BINDING SITE FOR RESIDUE CL A 505
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ERV_ALR (A:15-115,B:15-115,C:15-115,D:15-11...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ERV_ALR
PS51324
ERV/ALR sulfhydryl oxidase domain profile.
ALR_RAT
88-188
4
A:15-115
B:15-115
C:15-115
D:15-115
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3r7ca_ (A:)
1b: SCOP_d3r7cb_ (B:)
1c: SCOP_d3r7cc_ (C:)
1d: SCOP_d3r7cd_ (D:)
View:
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(
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
FAD-dependent thiol oxidase
(15)
Family
:
FAD-dependent thiol oxidase
(10)
Protein domain
:
automated matches
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d3r7ca_
A:
1b
d3r7cb_
B:
1c
d3r7cc_
C:
1d
d3r7cd_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (171 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (121 KB)
Header - Biol.Unit 2
Biol.Unit 3 (160 KB)
Header - Biol.Unit 3
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