3R6S - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF GLXR TRANSCRIPTION FACTOR FROM CORYNEBACTERIUM GLUTAMICUM WITH CAMP

Authors :   B. Jungwirth, F. Pojer

Date :   22 Mar 11 (Deposition) - 28 Mar 12 (Release) - 28 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.38

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B  (2x)
Biol. Unit 3: D,E  (1x)
Biol. Unit 4: F  (2x)

Keywords :   N-Terminal Camp-Binding Domain, C-Terminal Hth-Motif, Transcription Factor, Homodimer, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Jungwirth, F. Pojer
Crystal Structure Of Glxr Transcription Factor From Corynebacterium Glutamicum With Camp
To Be Published
PubMed: search

Molecule 1 - TRANSCRIPTION REGULATOR
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28A
	Expression System Strain	:	JM109(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CG0350, CG0350 (GLXR), CGL0291
	Organism Scientific	:	CORYNEBACTERIUM GLUTAMICUM
	Organism Taxid	:	1718
	Strain	:	ATCC13032
	Synonym	:	TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY, CAMP-BINDING DOMAINS-CATABOLITE GENE ACTIVATOR AND REGULATORY SUBUNIT OF CAMP- DEPENDENT PROTEIN KINASES

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (2x)	:		B
Biological Unit 3 (1x)	:				D	E
Biological Unit 4 (2x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 9)

No.	Name	Count	Type	Full Name
1	CMP	6	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2	HEZ	3	Ligand/Ion	HEXANE-1,6-DIOL

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	CMP	2	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2	HEZ	1	Ligand/Ion	HEXANE-1,6-DIOL

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	CMP	2	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2	HEZ	-1	Ligand/Ion	HEXANE-1,6-DIOL

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	CMP	2	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2	HEZ	1	Ligand/Ion	HEXANE-1,6-DIOL

Biological Unit 4 (2, 4)

No.	Name	Count	Type	Full Name
1	CMP	2	Ligand/Ion	ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2	HEZ	2	Ligand/Ion	HEXANE-1,6-DIOL

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:41 , LEU A:60 , LEU A:72 , MET A:75 , PHE A:81 , GLY A:82 , GLU A:83 , LEU A:84 , SER A:85 , ARG A:92 , THR A:93 , SER A:94 , ARG A:133 , THR A:137 , ASN C:138	BINDING SITE FOR RESIDUE CMP A 301
2	AC2	SOFTWARE	ARG A:33 , PHE A:34 , TYR A:51 , TYR E:51 , THR E:106	BINDING SITE FOR RESIDUE HEZ A 228
3	AC3	SOFTWARE	PHE B:41 , LEU B:72 , MET B:75 , PHE B:81 , GLY B:82 , GLU B:83 , LEU B:84 , SER B:85 , ARG B:92 , THR B:93 , SER B:94 , ARG B:133 , LEU B:134 , THR B:137 , ASN B:138 , HOH B:237	BINDING SITE FOR RESIDUE CMP B 301
4	AC4	SOFTWARE	LEU A:134 , ASN A:138 , PHE C:41 , LEU C:60 , LEU C:72 , PHE C:81 , GLY C:82 , GLU C:83 , LEU C:84 , SER C:85 , ARG C:92 , THR C:93 , SER C:94 , ARG C:133 , THR C:137	BINDING SITE FOR RESIDUE CMP C 301
5	AC5	SOFTWARE	PHE D:41 , LEU D:60 , LEU D:72 , PHE D:81 , GLY D:82 , GLU D:83 , LEU D:84 , SER D:85 , ARG D:92 , THR D:93 , SER D:94 , ARG D:133 , THR D:137 , ASN E:138	BINDING SITE FOR RESIDUE CMP D 301
6	AC6	SOFTWARE	ARG C:49 , TYR C:51 , ARG D:49 , TYR D:51	BINDING SITE FOR RESIDUE HEZ D 228
7	AC7	SOFTWARE	ASN D:138 , PHE E:41 , LEU E:60 , MET E:75 , PHE E:81 , GLY E:82 , GLU E:83 , LEU E:84 , SER E:85 , ARG E:92 , THR E:93 , SER E:94 , ARG E:133 , HOH E:247	BINDING SITE FOR RESIDUE CMP E 301
8	AC8	SOFTWARE	LEU F:60 , LEU F:72 , PHE F:81 , GLY F:82 , GLU F:83 , LEU F:84 , SER F:85 , ARG F:92 , THR F:93 , SER F:94 , ARG F:133 , ASN F:138	BINDING SITE FOR RESIDUE CMP F 301
9	AC9	SOFTWARE	PHE B:34 , TYR B:51 , ARG F:49 , TYR F:51 , THR F:106 , HOH F:241	BINDING SITE FOR RESIDUE HEZ F 228

(no "SS Bond" information available for 3R6S)

Asymmetric Unit

No.	Residues
1	Leu F:141	-	Ala F:142

(no "SAP(SNP)/Variant" information available for 3R6S)

Asymmetric Unit (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	CRPL_CORGL	13-133	6	A:13-133 B:13-133 C:13-133 D:13-133 E:13-133 F:13-133
2	HTH_CRP_2	PS51063	Crp-type HTH domain profile.	CRPL_CORGL	147-220	6	A:147-220 B:147-220 C:147-220 D:147-220 E:147-220 F:147-220

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	CRPL_CORGL	13-133	2	A:13-133 - C:13-133 - - -
2	HTH_CRP_2	PS51063	Crp-type HTH domain profile.	CRPL_CORGL	147-220	2	A:147-220 - C:147-220 - - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	CRPL_CORGL	13-133	2	- B:13-133 - - - -
2	HTH_CRP_2	PS51063	Crp-type HTH domain profile.	CRPL_CORGL	147-220	2	- B:147-220 - - - -

Biological Unit 3 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	CRPL_CORGL	13-133	2	- - - D:13-133 E:13-133 -
2	HTH_CRP_2	PS51063	Crp-type HTH domain profile.	CRPL_CORGL	147-220	2	- - - D:147-220 E:147-220 -

Biological Unit 4 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CNMP_BINDING_3	PS50042	cAMP/cGMP binding motif profile.	CRPL_CORGL	13-133	2	- - - - - F:13-133
2	HTH_CRP_2	PS51063	Crp-type HTH domain profile.	CRPL_CORGL	147-220	2	- - - - - F:147-220

(no "Exon" information available for 3R6S)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:225
 aligned with CRPL_CORGL | Q79VI7 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
           CRPL_CORGL     3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR 227
               SCOP domains d3r6sa1 A:3-147 automated matches                                                                                                                d3r6sa2 A:148-227 automated matches                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..hhhhhhhhhhh.eeeee....eee........eeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee....eee.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------CNMP_BINDING_3  PDB: A:13-133 UniProt: 13-133                                                                            -------------HTH_CRP_2  PDB: A:147-220 UniProt: 147-220                                ------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r6s A   3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR 227
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Chain B from PDB  Type:PROTEIN  Length:225
 aligned with CRPL_CORGL | Q79VI7 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
           CRPL_CORGL     3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR 227
               SCOP domains d3r6sb1 B:3-147 automated matches                                                                                                                d3r6sb2 B:148-227 automated matches                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..hhhhhhhhhh..eeeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee....eee.hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------CNMP_BINDING_3  PDB: B:13-133 UniProt: 13-133                                                                            -------------HTH_CRP_2  PDB: B:147-220 UniProt: 147-220                                ------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r6s B   3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR 227
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Chain C from PDB  Type:PROTEIN  Length:224
 aligned with CRPL_CORGL | Q79VI7 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:224
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
           CRPL_CORGL     3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRA 226
               SCOP domains d3r6sc1 C:3-147 automated matches                                                                                                                d3r6sc2 C:148-226 automated matches                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..hhhhhhhhhh..eeeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------CNMP_BINDING_3  PDB: C:13-133 UniProt: 13-133                                                                            -------------HTH_CRP_2  PDB: C:147-220 UniProt: 147-220                                ------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r6s C   3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRA 226
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Chain D from PDB  Type:PROTEIN  Length:224
 aligned with CRPL_CORGL | Q79VI7 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:224
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
           CRPL_CORGL     3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRA 226
               SCOP domains d3r6sd1 D:3-147 automated matches                                                                                                                d3r6sd2 D:148-226 automated matches                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhheeeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee....eee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------CNMP_BINDING_3  PDB: D:13-133 UniProt: 13-133                                                                            -------------HTH_CRP_2  PDB: D:147-220 UniProt: 147-220                                ------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r6s D   3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRA 226
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Chain E from PDB  Type:PROTEIN  Length:225
 aligned with CRPL_CORGL | Q79VI7 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
           CRPL_CORGL     3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR 227
               SCOP domains d3r6se1 E:3-147 automated matches                                                                                                                d3r6se2 E:148-227 automated matches                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..hhhhhhhhhhh.eeeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhheee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------CNMP_BINDING_3  PDB: E:13-133 UniProt: 13-133                                                                            -------------HTH_CRP_2  PDB: E:147-220 UniProt: 147-220                                ------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r6s E   3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR 227
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Chain F from PDB  Type:PROTEIN  Length:222
 aligned with CRPL_CORGL | Q79VI7 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
           CRPL_CORGL     3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR 227
               SCOP domains d3r6sf1 F:3-147 automated matches                                                                                                                d3r6sf2 F:148-227 automated matches                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..hhhhhhhhhhh.eeeee....eee.......eeeeeee..eeeee..---..eeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------CNMP_BINDING_3  PDB: F:13-133 UniProt: 13-133                                                                            -------------HTH_CRP_2  PDB: F:147-220 UniProt: 147-220                                ------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r6s F   3 GVQEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHA---RENLLTIMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSDMLRNWVADHPAIAEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEAGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLARRAR 227
                                    12        22        32        42        52        62 |   |  72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
                                                                                        64  68

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: DNA/RNA-binding 3-helical bundle (1299)

Superfamily: Winged helix DNA-binding domain (576)

Family: automated matches (118)

Protein domain: automated matches (118)

Corynebacterium glutamicum [TaxId: 1718] (1)

1a	d3r6sa2	A:148-227
1b	d3r6sb2	B:148-227
1c	d3r6sc2	C:148-226
1d	d3r6sd2	D:148-226
1e	d3r6se2	E:148-227
1f	d3r6sf2	F:148-227

Class: All beta proteins (24004)

Fold: Double-stranded beta-helix (580)

Superfamily: cAMP-binding domain-like (99)

Family: automated matches (17)

Protein domain: automated matches (17)

Corynebacterium glutamicum [TaxId: 1718] (1)

2a	d3r6sa1	A:3-147
2b	d3r6sb1	B:3-147
2c	d3r6sc1	C:3-147
2d	d3r6sd1	D:3-147
2e	d3r6se1	E:3-147
2f	d3r6sf1	F:3-147

(no "CATH Domain" information available for 3R6S)

(no "Pfam Domain" information available for 3R6S)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (CRPL_CORGL | Q79VI7)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0030552	cAMP binding	Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:2000874	regulation of glyoxylate cycle	Any process that modulates the frequency, rate or extent of glyoxylate cycle.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Leu F:141 - Ala F:142	[ RasMol ]

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	3r6s
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(no "Related Entries Specified in the PDB File" available for 3R6S)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 12)

Exons (0, 0)

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SCOP Domains (2, 12)

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Gene Ontology (9, 9)

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