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3R6S
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLXR TRANSCRIPTION FACTOR FROM CORYNEBACTERIUM GLUTAMICUM WITH CAMP
Authors
:
B. Jungwirth, F. Pojer
Date
:
22 Mar 11 (Deposition) - 28 Mar 12 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.38
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Biol. Unit 3: D,E (1x)
Biol. Unit 4: F (2x)
Keywords
:
N-Terminal Camp-Binding Domain, C-Terminal Hth-Motif, Transcription Factor, Homodimer, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Jungwirth, F. Pojer
Crystal Structure Of Glxr Transcription Factor From Corynebacterium Glutamicum With Camp
To Be Published
[
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]
Hetero Components
(2, 9)
Info
All Hetero Components
1a: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPa)
1b: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPb)
1c: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPc)
1d: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPd)
1e: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPe)
1f: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPf)
2a: HEXANE-1,6-DIOL (HEZa)
2b: HEXANE-1,6-DIOL (HEZb)
2c: HEXANE-1,6-DIOL (HEZc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMP
6
Ligand/Ion
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2
HEZ
3
Ligand/Ion
HEXANE-1,6-DIOL
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:41 , LEU A:60 , LEU A:72 , MET A:75 , PHE A:81 , GLY A:82 , GLU A:83 , LEU A:84 , SER A:85 , ARG A:92 , THR A:93 , SER A:94 , ARG A:133 , THR A:137 , ASN C:138
BINDING SITE FOR RESIDUE CMP A 301
2
AC2
SOFTWARE
ARG A:33 , PHE A:34 , TYR A:51 , TYR E:51 , THR E:106
BINDING SITE FOR RESIDUE HEZ A 228
3
AC3
SOFTWARE
PHE B:41 , LEU B:72 , MET B:75 , PHE B:81 , GLY B:82 , GLU B:83 , LEU B:84 , SER B:85 , ARG B:92 , THR B:93 , SER B:94 , ARG B:133 , LEU B:134 , THR B:137 , ASN B:138 , HOH B:237
BINDING SITE FOR RESIDUE CMP B 301
4
AC4
SOFTWARE
LEU A:134 , ASN A:138 , PHE C:41 , LEU C:60 , LEU C:72 , PHE C:81 , GLY C:82 , GLU C:83 , LEU C:84 , SER C:85 , ARG C:92 , THR C:93 , SER C:94 , ARG C:133 , THR C:137
BINDING SITE FOR RESIDUE CMP C 301
5
AC5
SOFTWARE
PHE D:41 , LEU D:60 , LEU D:72 , PHE D:81 , GLY D:82 , GLU D:83 , LEU D:84 , SER D:85 , ARG D:92 , THR D:93 , SER D:94 , ARG D:133 , THR D:137 , ASN E:138
BINDING SITE FOR RESIDUE CMP D 301
6
AC6
SOFTWARE
ARG C:49 , TYR C:51 , ARG D:49 , TYR D:51
BINDING SITE FOR RESIDUE HEZ D 228
7
AC7
SOFTWARE
ASN D:138 , PHE E:41 , LEU E:60 , MET E:75 , PHE E:81 , GLY E:82 , GLU E:83 , LEU E:84 , SER E:85 , ARG E:92 , THR E:93 , SER E:94 , ARG E:133 , HOH E:247
BINDING SITE FOR RESIDUE CMP E 301
8
AC8
SOFTWARE
LEU F:60 , LEU F:72 , PHE F:81 , GLY F:82 , GLU F:83 , LEU F:84 , SER F:85 , ARG F:92 , THR F:93 , SER F:94 , ARG F:133 , ASN F:138
BINDING SITE FOR RESIDUE CMP F 301
9
AC9
SOFTWARE
PHE B:34 , TYR B:51 , ARG F:49 , TYR F:51 , THR F:106 , HOH F:241
BINDING SITE FOR RESIDUE HEZ F 228
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (A:13-133,B:13-133,C:13-133,D:13-13...)
2: HTH_CRP_2 (A:147-220,B:147-220,C:147-220,D:14...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
CRPL_CORGL
13-133
6
A:13-133
B:13-133
C:13-133
D:13-133
E:13-133
F:13-133
2
HTH_CRP_2
PS51063
Crp-type HTH domain profile.
CRPL_CORGL
147-220
6
A:147-220
B:147-220
C:147-220
D:147-220
E:147-220
F:147-220
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d3r6sa2 (A:148-227)
1b: SCOP_d3r6sb2 (B:148-227)
1c: SCOP_d3r6sc2 (C:148-226)
1d: SCOP_d3r6sd2 (D:148-226)
1e: SCOP_d3r6se2 (E:148-227)
1f: SCOP_d3r6sf2 (F:148-227)
2a: SCOP_d3r6sa1 (A:3-147)
2b: SCOP_d3r6sb1 (B:3-147)
2c: SCOP_d3r6sc1 (C:3-147)
2d: SCOP_d3r6sd1 (D:3-147)
2e: SCOP_d3r6se1 (E:3-147)
2f: SCOP_d3r6sf1 (F:3-147)
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
automated matches
(118)
Protein domain
:
automated matches
(118)
Corynebacterium glutamicum [TaxId: 1718]
(1)
1a
d3r6sa2
A:148-227
1b
d3r6sb2
B:148-227
1c
d3r6sc2
C:148-226
1d
d3r6sd2
D:148-226
1e
d3r6se2
E:148-227
1f
d3r6sf2
F:148-227
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Corynebacterium glutamicum [TaxId: 1718]
(1)
2a
d3r6sa1
A:3-147
2b
d3r6sb1
B:3-147
2c
d3r6sc1
C:3-147
2d
d3r6sd1
D:3-147
2e
d3r6se1
E:3-147
2f
d3r6sf1
F:3-147
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CATH Domains
(0, 0)
Info
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (224 KB)
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