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(-) Description

Title :  REDJ WITH PEG MOLECULE BOUND IN THE ACTIVE SITE
 
Authors :  J. R. Whicher, J. L. Smith
Date :  05 Feb 11  (Deposition) - 04 May 11  (Release) - 06 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Alpha/Beta Hydrolase Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Whicher, G. Florova, P. K. Sydor, R. Singh, M. Alhamadsheh, G. L. Challis, K. A. Reynolds, J. L. Smith
Structure And Function Of The Redj Protein, A Thioesterase From The Prodiginine Biosynthetic Pathway In Streptomyces Coelicolor.
J. Biol. Chem. V. 286 22558 2011
PubMed-ID: 21543318  |  Reference-DOI: 10.1074/JBC.M110.213512

(-) Compounds

Molecule 1 - THIOESTERASE
    Chains: A, B, C, D
    EC Number: 3.1.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 6-261
    Gene: SCO5894, SC3F7.14
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 1902
    Synonym: REDJ

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1PG4-1Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU B:150 , VAL B:158 , LEU B:187BINDING SITE FOR RESIDUE PG4 B 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QMW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QMW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QMW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QMW)

(-) Exons   (0, 0)

(no "Exon" information available for 3QMW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with O54157_STRCO | O54157 from UniProtKB/TrEMBL  Length:280

    Alignment length:251
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
         O54157_STRCO    11 SAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........--..........eeeeee.....hhhhhhhhhhhhh..eeeee.....hhhhh......hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhh.......eeee...hhhhh...hhhhhhhhhhhhhhhhh...---......hhhhhhhhhhhhhhhhhh............eeeeee......hhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qmw A  11 SAWFPRPVAA--AEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGL---DTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
                                    20  |     30        40        50        60        70        80        90       100       110       120       130       140       150       160    |  170       180       190       200       210       220       230       240       250       260 
                                    20 23                                                                                                                                           165 169                                                                                            


Chain B from PDB  Type:PROTEIN  Length:246
 aligned with O54157_STRCO | O54157 from UniProtKB/TrEMBL  Length:280

    Alignment length:251
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
         O54157_STRCO    11 SAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........-----.........eeeeee.....hhhhhhhhhhhhh..eeeee.....hhhhh......hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhh.....eeeee...hhhhh........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeee......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qmw B  11 SAWFPRPV-----EPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
                                   | -   |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
                                  18    24                                                                                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:241
 aligned with O54157_STRCO | O54157 from UniProtKB/TrEMBL  Length:280

    Alignment length:256
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255      
         O54157_STRCO     6 LLSQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........-..........eeeeee.....hhhhh.hhhhhh...eeeee.....hhhhh......hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhh......eeee...hhhhh...hhhhhhhhhhhhhhhh...--------------hhhhhhhhhhhhhh............eeeeeeee....hhhhhhhhhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qmw C   6 LLSQRSAWFPRPVAAP-AEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGG--------------RLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
                                    15     | |25        35        45        55        65        75        85        95       105       115       125       135       145       155        |-         -   |   185       195       205       215       225       235       245       255      
                                          21 |                                                                                                                                          164            179                                                                                  
                                            23                                                                                                                                                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:249
 aligned with O54157_STRCO | O54157 from UniProtKB/TrEMBL  Length:280

    Alignment length:251
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 
         O54157_STRCO    11 SAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------Thioesterase-3qmwD01 D:33-261                                                                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) ----------------------Thioesterase-3qmwD02 D:33-261                                                                                                                                                                                                         Pfam domains (2)
           Pfam domains (3) ----------------------Thioesterase-3qmwD03 D:33-261                                                                                                                                                                                                         Pfam domains (3)
           Pfam domains (4) ----------------------Thioesterase-3qmwD04 D:33-261                                                                                                                                                                                                         Pfam domains (4)
         Sec.struct. author ......................eeeeee.....hhhhhhhhhhhhh..eeeee.....hhhhh......hhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhh.......eeee...hhhhh........hhhhhhhhhhhh....--.hhhhhhhhhhhhhhhhhhhhhhh............eeeeee......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qmw D  11 SAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLD--DTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     | 170       180       190       200       210       220       230       240       250       260 
                                                                                                                                                                                     166  |                                                                                            
                                                                                                                                                                                        169
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QMW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QMW)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (O54157_STRCO | O54157)
molecular function
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008610    lipid biosynthetic process    The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O54157_STRCO | O54157: 3qmv

(-) Related Entries Specified in the PDB File

3qmv STRUCTURE OF REDJ WITHOUT PEG BOUND IN THE ACTIVE SITE.