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(-) Description

Title :  REDJ-THIOESTERASE FROM THE PRODIGININE BIOSYNTHETIC PATHWAY IN STREPTOMYCES COELICOLOR
 
Authors :  J. R. Whicher, J. L. Smith
Date :  05 Feb 11  (Deposition) - 04 May 11  (Release) - 06 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Alpha/Beta Hydrolase Fold, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Whicher, G. Florova, P. K. Sydor, R. Singh, M. Alhamadsheh, G. L. Challis, K. A. Reynolds, J. L. Smith
Structure And Function Of The Redj Protein, A Thioesterase From The Prodiginine Biosynthetic Pathway In Streptomyces Coelicolor.
J. Biol. Chem. V. 286 22558 2011
PubMed-ID: 21543318  |  Reference-DOI: 10.1074/JBC.M110.213512

(-) Compounds

Molecule 1 - THIOESTERASE
    Chains: A, B, C, D
    EC Number: 3.1.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 6-261
    Gene: SCO5894, SC3F7.14
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 1902
    Synonym: REDJ

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3QMV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QMV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu C:24 -Pro C:25
2Glu D:24 -Pro D:25

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QMV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QMV)

(-) Exons   (0, 0)

(no "Exon" information available for 3QMV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:244
 aligned with O54157_STRCO | O54157 from UniProtKB/TrEMBL  Length:280

    Alignment length:253
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258   
         O54157_STRCO     9 QRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..................eeeeee.....hhhhhhhhhhhhh..eeeee.....hhhhh......hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhh.......eeee...hhhhh...hhhhhhhhhhhhhhhhhh...---------...hhhhhhhhhhhhhh............eeeeeeee....hhhhhhhhhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qmv A   9 QRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTmEPLAEAVADALEEHRLTHDYALFGHSmGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLD---------FDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEmVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
                                    18        28        38        48        58        68        78  |     88        98       108       118       128       138       148       158       | -       178       188       198       208       218 |     228       238       248       258   
                                                                                                   81-MSE                    108-MSE                                                   166       176                                         220-MSE                                     


Chain B from PDB  Type:PROTEIN  Length:254
 aligned with O54157_STRCO | O54157 from UniProtKB/TrEMBL  Length:280

    Alignment length:254
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
         O54157_STRCO     8 SQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh...................eeeee.....hhhhhhhhhhhhh...eeee.....hhhhh......hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhh.......eeee...hhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeee....hhhhhhhhhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qmv B   8 SQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTmEPLAEAVADALEEHRLTHDYALFGHSmGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEmVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
                                    17        27        37        47        57        67        77   |    87        97       107|      117       127       137       147       157       167       177       187       197       207       217  |    227       237       247       257    
                                                                                                    81-MSE                    108-MSE                                                                                                         220-MSE                                     


Chain C from PDB  Type:PROTEIN  Length:268
 aligned with O54157_STRCO | O54157 from UniProtKB/TrEMBL  Length:280

    Alignment length:269
                                    1                                                                                                                                                                                                                                                                    
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
         O54157_STRCO     - --------MSPADLLSQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh....hhhhhhhhhhh........-.........eeeeee.....hhhhhhhhhhhhh..eeeee.....hhhhh......hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhh.......eeee...hhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeee......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qmv C  -7 DLGTENLYFQSNALLSQRSAWFPRPVAAPA-EPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTmEPLAEAVADALEEHRLTHDYALFGHSmGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEmVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
                                     2        12        22 |      32        42        52        62        72        82        92       102     | 112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
                                                        22 |                                                       81-MSE                    108-MSE                                                                                                         220-MSE                                     
                                                          24                                                                                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:266
 aligned with O54157_STRCO | O54157 from UniProtKB/TrEMBL  Length:280

    Alignment length:269
                                    1                                                                                                                                                                                                                                                                    
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
         O54157_STRCO     - --------MSPADLLSQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------Thioesterase-3qmvD01 D:33-261                                                                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) ----------------------------------------Thioesterase-3qmvD02 D:33-261                                                                                                                                                                                                         Pfam domains (2)
           Pfam domains (3) ----------------------------------------Thioesterase-3qmvD03 D:33-261                                                                                                                                                                                                         Pfam domains (3)
           Pfam domains (4) ----------------------------------------Thioesterase-3qmvD04 D:33-261                                                                                                                                                                                                         Pfam domains (4)
         Sec.struct. author ..hhhhh.....hhhhhhhhhh......---.........eeeeee.....hhhhhhhhhhhhh..eeeee.....hhhhh......hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhh.......eeee...hhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh............eeeeee......hhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qmv D  -7 DLGTENLYFQSNALLSQRSAWFPRPVAA---EPPDPAAAPLRLVCFPYAGGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTmEPLAEAVADALEEHRLTHDYALFGHSmGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIATPEmVEAWRPYTTGSFLRRHLPGNHFFLNGGPSRDRLLAHLGTEL 261
                                     2        12       | - |      32        42        52        62        72        82        92       102     | 112       122       132       142       152       162       172       182       192       202       212       222       232       242       252         
                                                      20  24                                                       81-MSE                    108-MSE                                                                                                         220-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QMV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QMV)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (O54157_STRCO | O54157)
molecular function
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008610    lipid biosynthetic process    The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O54157_STRCO | O54157: 3qmw

(-) Related Entries Specified in the PDB File

3qmw STRUCTURE OF REDJ WITH PEG BOUND IN THE ACTIVE SITE.