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(-) Description

Title :  THE STRUCTURE AND FUNCTION OF AN ARABINAN-SPECIFIC ALPHA-1,2-ARABINOFURANOSIDASE IDENTIFIED FROM SCREENING THE ACTIVITIES OF BACTERIAL GH43 GLYCOSIDE HYDROLASES
 
Authors :  A. Cartmell, L. S. Mckee, M. Pena, J. Larsbrink, H. Brumer, R. J. Lewis, A Nielsen, H. J. Gilbert, J. Marles-Wright
Date :  20 Jan 11  (Deposition) - 16 Feb 11  (Release) - 11 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  5-Bladed Beta Propeller, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Cartmell, L. S. Mckee, M. J. Pena, J. Larsbrink, H. Brumer, S. Kaneko H. Ichinose, R. J. Lewis, A. Vikso-Nielsen, H. J. Gilbert, J. Marles-Wright
The Structure And Function Of An Arabinan-Specific {Alpha}-1, 2-Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases.
J. Biol. Chem. V. 286 15483 2011
PubMed-ID: 21339299  |  Reference-DOI: 10.1074/JBC.M110.215962

(-) Compounds

Molecule 1 - BETA-XYLOSIDASE/ALPHA-L-ARABINFURANOSIDASE, GLY43N
    Chains: A, B, C, D
    EC Number: 3.2.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: B834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PET32B
    Fragment: UNP RESIDUES 28-334
    Gene: GLY43N, CJA_3018
    Organism Common: PSEUDOMONAS FLUORESCENS SUBSP. CELLULOSA
    Organism Scientific: CELLVIBRIO JAPONICUS
    Organism Taxid: 498211
    Strain: UEDA107

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 79)

Asymmetric Unit (4, 79)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2MSE30Mod. Amino AcidSELENOMETHIONINE
3SO444Ligand/IonSULFATE ION
4TAM1Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
Biological Unit 1 (2, 19)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE7Mod. Amino AcidSELENOMETHIONINE
3SO412Ligand/IonSULFATE ION
4TAM-1Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
Biological Unit 2 (2, 14)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3SO46Ligand/IonSULFATE ION
4TAM-1Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
Biological Unit 3 (3, 20)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE7Mod. Amino AcidSELENOMETHIONINE
3SO412Ligand/IonSULFATE ION
4TAM1Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
Biological Unit 4 (2, 22)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3SO414Ligand/IonSULFATE ION
4TAM-1Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE

(-) Sites  (49, 49)

Asymmetric Unit (49, 49)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:41 , MSE A:69 , TRP A:103 , ASP A:168 , ARG A:295BINDING SITE FOR RESIDUE SO4 A 336
02AC2SOFTWAREHIS A:47 , LYS A:48 , SER A:138 , PRO A:139BINDING SITE FOR RESIDUE SO4 A 337
03AC3SOFTWAREARG A:110 , ASN A:111 , SO4 A:339BINDING SITE FOR RESIDUE SO4 A 338
04AC4SOFTWAREARG A:110 , ASN A:111 , SO4 A:338BINDING SITE FOR RESIDUE SO4 A 339
05AC5SOFTWARETRP A:97 , HIS A:122 , LYS A:126 , LYS A:149 , ALA A:150BINDING SITE FOR RESIDUE SO4 A 340
06AC6SOFTWARELYS A:192 , PRO A:203 , ARG A:205BINDING SITE FOR RESIDUE SO4 A 341
07AC7SOFTWAREPRO A:42 , ALA A:104 , SER A:105 , GLN A:106 , PRO A:169 , ILE A:217 , HIS A:267 , GLN A:268BINDING SITE FOR RESIDUE SO4 A 342
08AC8SOFTWAREASP B:26 , GLN B:28 , ASN B:82BINDING SITE FOR RESIDUE SO4 B 335
09AC9SOFTWAREPRO B:42 , ALA B:104 , SER B:105 , GLN B:106 , PRO B:169 , ALA B:216 , ILE B:217 , TRP B:218 , HIS B:267 , GLN B:268BINDING SITE FOR RESIDUE SO4 B 336
10BC1SOFTWAREARG B:110 , ASN B:111 , LYS B:195BINDING SITE FOR RESIDUE SO4 B 337
11BC2SOFTWARESER C:105 , GLN C:106 , PRO C:169 , ILE C:217 , TRP C:218 , HIS C:267 , GLN C:268BINDING SITE FOR RESIDUE SO4 C 335
12BC3SOFTWARETRP C:97 , HIS C:122 , LYS C:126 , LYS C:149 , ALA C:150BINDING SITE FOR RESIDUE SO4 C 336
13BC4SOFTWARELYS C:192 , ARG C:205BINDING SITE FOR RESIDUE SO4 C 337
14BC5SOFTWARELYS C:194 , LYS C:195BINDING SITE FOR RESIDUE SO4 C 338
15BC6SOFTWAREARG C:110 , ASN C:111 , LYS C:195BINDING SITE FOR RESIDUE SO4 C 339
16BC7SOFTWAREASP D:41 , MSE D:69 , ALA D:104 , ARG D:295 , SO4 D:342BINDING SITE FOR RESIDUE SO4 D 335
17BC8SOFTWARESER D:105 , GLN D:106 , ASP D:168 , PRO D:169 , ILE D:217 , TRP D:218 , HIS D:267 , GLN D:268BINDING SITE FOR RESIDUE SO4 D 336
18BC9SOFTWAREARG D:110 , ASN D:111 , LYS D:195BINDING SITE FOR RESIDUE SO4 D 337
19CC1SOFTWAREHIS D:122 , LYS D:126 , LYS D:149 , ALA D:150BINDING SITE FOR RESIDUE SO4 D 338
20CC2SOFTWARELYS D:194 , LYS D:195BINDING SITE FOR RESIDUE SO4 D 339
21CC3SOFTWAREASP C:41 , PHE C:67 , MSE C:69 , ALA C:104 , ARG C:295 , SO4 C:343BINDING SITE FOR RESIDUE SO4 C 340
22CC4SOFTWARELYS C:237 , GLU C:258 , VAL C:259 , THR D:316 , THR D:317BINDING SITE FOR RESIDUE SO4 C 341
23CC5SOFTWAREALA A:285 , THR A:316 , GLU B:258 , VAL B:259BINDING SITE FOR RESIDUE SO4 A 343
24CC6SOFTWAREASP D:26 , GLN D:28 , ASN D:82BINDING SITE FOR RESIDUE SO4 D 340
25CC7SOFTWAREARG A:121 , GLY A:128 , PHE A:129 , ASP A:163BINDING SITE FOR RESIDUE SO4 A 344
26CC8SOFTWARELYS B:192BINDING SITE FOR RESIDUE SO4 B 338
27CC9SOFTWAREHIS C:47 , LYS C:48 , SER C:138 , PRO C:139BINDING SITE FOR RESIDUE SO4 C 342
28DC1SOFTWARELYS D:192 , ARG D:205BINDING SITE FOR RESIDUE SO4 D 341
29DC2SOFTWAREHIS B:47 , LYS B:48 , PRO B:139BINDING SITE FOR RESIDUE SO4 B 339
30DC3SOFTWARETYR A:222 , GLN A:223BINDING SITE FOR RESIDUE SO4 A 345
31DC4SOFTWAREASN D:185 , GLU D:215 , SO4 D:335BINDING SITE FOR RESIDUE SO4 D 342
32DC5SOFTWARELYS A:194 , LYS A:195 , ASP A:201BINDING SITE FOR RESIDUE SO4 A 346
33DC6SOFTWAREASN C:185 , GLU C:215 , THR C:265 , SO4 C:340BINDING SITE FOR RESIDUE SO4 C 343
34DC7SOFTWAREGLU D:301 , PHE D:303 , LYS D:311 , ARG D:312 , ILE D:313 , VAL D:314BINDING SITE FOR RESIDUE SO4 D 343
35DC8SOFTWARELYS C:311 , ARG C:312BINDING SITE FOR RESIDUE SO4 C 344
36DC9SOFTWAREPRO D:188 , ILE D:207 , GLU D:208 , GLY D:209 , LEU D:210BINDING SITE FOR RESIDUE SO4 D 344
37EC1SOFTWAREPRO D:211 , GLU D:212BINDING SITE FOR RESIDUE SO4 D 345
38EC2SOFTWAREMSE C:242 , LYS C:253 , ASP C:307 , THR C:309BINDING SITE FOR RESIDUE SO4 C 345
39EC3SOFTWARESER D:25 , ASP D:26BINDING SITE FOR RESIDUE SO4 D 346
40EC4SOFTWAREPHE C:234 , PRO D:288 , ASP D:289BINDING SITE FOR RESIDUE SO4 D 347
41EC5SOFTWARELYS A:311 , ARG A:312BINDING SITE FOR RESIDUE SO4 A 347
42EC6SOFTWAREGLN A:292 , ASP B:62 , ASN B:63 , THR B:64 , ASP B:289BINDING SITE FOR RESIDUE SO4 B 340
43EC7SOFTWAREILE C:271 , GLU C:272BINDING SITE FOR RESIDUE SO4 C 346
44EC8SOFTWAREARG D:205 , ALA D:206BINDING SITE FOR RESIDUE SO4 D 348
45EC9SOFTWAREASN C:31 , PRO C:32 , GLY C:261 , TYR C:281 , THR C:283 , ALA C:285 , SER C:298 , THR C:316 , LYS D:237 , GLU D:258 , VAL D:259BINDING SITE FOR RESIDUE TAM C 347
46FC1SOFTWAREASN B:154 , THR B:157 , ASP B:165 , ASP B:166BINDING SITE FOR RESIDUE CA B 341
47FC2SOFTWAREASN C:154 , THR C:157 , ASP C:165 , ASP C:166BINDING SITE FOR RESIDUE CA C 348
48FC3SOFTWAREASN D:154 , THR D:157 , ASP D:165 , ASP D:166BINDING SITE FOR RESIDUE CA D 349
49FC4SOFTWAREASN A:154 , THR A:157 , ASP A:165 , ASP A:166BINDING SITE FOR RESIDUE CA A 348

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QED)

(-) Cis Peptide Bonds  (19, 19)

Asymmetric Unit
No.Residues
1Asn A:31 -Pro A:32
2Gly A:141 -Pro A:142
3Phe A:234 -Pro A:235
4Gly A:248 -Pro A:249
5Arg A:287 -Pro A:288
6Asn B:31 -Pro B:32
7Gly B:141 -Pro B:142
8Phe B:234 -Pro B:235
9Arg B:287 -Pro B:288
10Asn C:31 -Pro C:32
11Gly C:141 -Pro C:142
12Phe C:234 -Pro C:235
13Gly C:248 -Pro C:249
14Arg C:287 -Pro C:288
15Asn D:31 -Pro D:32
16Gly D:141 -Pro D:142
17Phe D:234 -Pro D:235
18Gly D:248 -Pro D:249
19Arg D:287 -Pro D:288

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QED)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QED)

(-) Exons   (0, 0)

(no "Exon" information available for 3QED)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
 aligned with B3PD60_CELJU | B3PD60 from UniProtKB/TrEMBL  Length:334

    Alignment length:297
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       
         B3PD60_CELJU    29 AENPIFTDVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVMNEWLVYSSDDMANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNTRPRYAKLKKNMVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAMGFPEKIGYAMGKSIKGPWVYKGILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELFYNPDGTIKRIVMTTEGVAPNKS 325
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeee..eeeeeeeee..........eeeeeeeee.....eeeeeeeee.hhh..eeeeeeeeeeeee..eeeeeeeeee......eeeeeeee.......ee.......hhhhh............eeee.....eeeee.....eeeee......eeeeeee......eeeeeeeeee..eeeeeeee....eeeeeee.......eeeeeee...........eeeee..eeeeeeee............eeeeeee....................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qed A  29 AENPIFTDVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVmNEWLVYSSDDmANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDmTTDTPIDWDDIDPSVFIDDDGQAYLFWGNTRPRYAKLKKNmVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAmGFPEKIGYAmGKSIKGPWVYKGILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELFYNPDGTIKRIVmTTEGVAPNKS 325
                                    38        48        58        68|       78 |      88        98       108       118       128       138       148       158       168       178       188       198       208       218       228   |   238   |   248       258       268       278       288       298       308      |318       
                                                                   69-MSE     80-MSE                                                                     156-MSE                                  197-MSE                            232-MSE   242-MSE                                                                  315-MSE      


Chain B from PDB  Type:PROTEIN  Length:305
 aligned with B3PD60_CELJU | B3PD60 from UniProtKB/TrEMBL  Length:334

    Alignment length:309
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316         
         B3PD60_CELJU    17 ALLLGTGSALVQAENPIFTDVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVMNEWLVYSSDDMANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNTRPRYAKLKKNMVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAMGFPEKIGYAMGKSIKGPWVYKGILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELFYNPDGTIKRIVMTTEGVAPNKS 325
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......----............eeeeeeeee..eeeeeeeee..........eeeeeeeee......eeeeeeee.hhh..eeeeeeeeeeeee..eeeeeeeeee......eeeeeeee.......ee.......hhhhh............eeee.....eeeee.....eeeee......eeeeeee......eeeeeeeeee..eeeeeeee....eeeeeee.......eeeeeee...........eeeee..eeeeeeee............eeeeee........................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qed B  21 AmAISD----PQAENPIFTDVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVmNEWLVYSSDDmANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDmTTDTPIDWDDIDPSVFIDDDGQAYLFWGNTRPRYAKLKKNmVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAmGFPEKIGYAmGKSIKGPWVYKGILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELFYNPDGTIKRIVmTTEGVAPNKS 325
                             |   |   -|       36        46        56        66  |     76   |    86        96       106       116       126       136       146       156       166       176       186       196|      206       216       226     | 236     | 246       256       266       276       286       296       306       316         
                            22-MSE   27                                        69-MSE     80-MSE                                                                     156-MSE                                  197-MSE                            232-MSE   242-MSE                                                                  315-MSE      


Chain C from PDB  Type:PROTEIN  Length:302
 aligned with B3PD60_CELJU | B3PD60 from UniProtKB/TrEMBL  Length:334

    Alignment length:302
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325  
         B3PD60_CELJU    26 LVQAENPIFTDVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVMNEWLVYSSDDMANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNTRPRYAKLKKNMVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAMGFPEKIGYAMGKSIKGPWVYKGILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELFYNPDGTIKRIVMTTEGVAPNKSPE 327
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeee..eeeeeeeee..........eeeeeeeee......eeeeeeee.hhh..eeeeeeeeeeeee..eeeeeeeeee......eeeeeeee.......ee.......hhhhh............eeee.....eeeee.....eeeee...........ee......eeeeeeeeee..eeeeeeee....eeeeeee.......eeeeeee...........eeeee..eeeeeeee............eeeeeee......................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qed C  26 DPQAENPIFTDVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVmNEWLVYSSDDmANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDmTTDTPIDWDDIDPSVFIDDDGQAYLFWGNTRPRYAKLKKNmVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAmGFPEKIGYAmGKSIKGPWVYKGILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELFYNPDGTIKRIVmTTEGVAPNKSPE 327
                                    35        45        55        65   |    75    |   85        95       105       115       125       135       145       155|      165       175       185       195 |     205       215       225      |235      |245       255       265       275       285       295       305       315       325  
                                                                      69-MSE     80-MSE                                                                     156-MSE                                  197-MSE                            232-MSE   242-MSE                                                                  315-MSE        


Chain D from PDB  Type:PROTEIN  Length:305
 aligned with B3PD60_CELJU | B3PD60 from UniProtKB/TrEMBL  Length:334

    Alignment length:309
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316         
         B3PD60_CELJU    17 ALLLGTGSALVQAENPIFTDVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVMNEWLVYSSDDMANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNTRPRYAKLKKNMVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAMGFPEKIGYAMGKSIKGPWVYKGILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELFYNPDGTIKRIVMTTEGVAPNKS 325
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------Glyco_hydro_43-3qedD01 D:29-310                                                                                                                                                                                                                                                           --------------- Pfam domains (1)
           Pfam domains (2) ------------Glyco_hydro_43-3qedD02 D:29-310                                                                                                                                                                                                                                                           --------------- Pfam domains (2)
           Pfam domains (3) ------------Glyco_hydro_43-3qedD03 D:29-310                                                                                                                                                                                                                                                           --------------- Pfam domains (3)
           Pfam domains (4) ------------Glyco_hydro_43-3qedD04 D:29-310                                                                                                                                                                                                                                                           --------------- Pfam domains (4)
         Sec.struct. author ......----...........eeeeeeeeee..eeeeeeeee..........eeeeeeeee.....eeeeeeeee.hhh..eee.....eeee....eeeeeeeee......eeeeeeee.......ee.......hhhhh............eeee.....eeeee.....eeeee......eeeeeee......eeeeeeeeee..eeeeeeee....eeeeeee.......eeeeeee...........eeeee..eeeeeeee............eeeeeee....................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qed D  21 AmAISD----PQAENPIFTDVFTADPAALVHKGRVYLYAGRDEAPDNTTFFVmNEWLVYSSDDmANWEAHGPGLRAKDFTWAKGDAWASQVIERNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDmTTDTPIDWDDIDPSVFIDDDGQAYLFWGNTRPRYAKLKKNmVELDGPIRAIEGLPEFTEAIWVHKYQDNYYLSYAmGFPEKIGYAmGKSIKGPWVYKGILNEVAGNTPTNHQAIIEFNNKHYFIYHTGAGRPDGGQYRRSVSIDELFYNPDGTIKRIVmTTEGVAPNKS 325
                             |   |   -|       36        46        56        66  |     76   |    86        96       106       116       126       136       146       156       166       176       186       196|      206       216       226     | 236     | 246       256       266       276       286       296       306       316         
                            22-MSE   27                                        69-MSE     80-MSE                                                                     156-MSE                                  197-MSE                            232-MSE   242-MSE                                                                  315-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QED)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QED)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: B_Fructosidase (34)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (B3PD60_CELJU | B3PD60)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

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        B3PD60_CELJU | B3PD60: 3qee 3qef

(-) Related Entries Specified in the PDB File

3qee 3qef