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3QED
Biol. Unit 1
Info
Asym.Unit (211 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (55 KB)
Biol.Unit 4 (55 KB)
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(1)
Title
:
THE STRUCTURE AND FUNCTION OF AN ARABINAN-SPECIFIC ALPHA-1,2-ARABINOFURANOSIDASE IDENTIFIED FROM SCREENING THE ACTIVITIES OF BACTERIAL GH43 GLYCOSIDE HYDROLASES
Authors
:
A. Cartmell, L. S. Mckee, M. Pena, J. Larsbrink, H. Brumer, R. J. Lewis, A Nielsen, H. J. Gilbert, J. Marles-Wright
Date
:
20 Jan 11 (Deposition) - 16 Feb 11 (Release) - 11 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.99
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
5-Bladed Beta Propeller, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Cartmell, L. S. Mckee, M. J. Pena, J. Larsbrink, H. Brumer, S. Kaneko H. Ichinose, R. J. Lewis, A. Vikso-Nielsen, H. J. Gilbert, J. Marles-Wright
The Structure And Function Of An Arabinan-Specific {Alpha}-1, 2-Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases.
J. Biol. Chem. V. 286 15483 2011
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Hetero Components
(2, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3af: SULFATE ION (SO4af)
3ag: SULFATE ION (SO4ag)
3ah: SULFATE ION (SO4ah)
3ai: SULFATE ION (SO4ai)
3aj: SULFATE ION (SO4aj)
3ak: SULFATE ION (SO4ak)
3al: SULFATE ION (SO4al)
3am: SULFATE ION (SO4am)
3an: SULFATE ION (SO4an)
3ao: SULFATE ION (SO4ao)
3ap: SULFATE ION (SO4ap)
3aq: SULFATE ION (SO4aq)
3ar: SULFATE ION (SO4ar)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
4a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MSE
7
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
12
Ligand/Ion
SULFATE ION
4
TAM
-1
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: CC5 (SOFTWARE)
09: CC7 (SOFTWARE)
10: DC3 (SOFTWARE)
11: DC5 (SOFTWARE)
12: EC5 (SOFTWARE)
13: EC6 (SOFTWARE)
14: FC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:41 , MSE A:69 , TRP A:103 , ASP A:168 , ARG A:295
BINDING SITE FOR RESIDUE SO4 A 336
02
AC2
SOFTWARE
HIS A:47 , LYS A:48 , SER A:138 , PRO A:139
BINDING SITE FOR RESIDUE SO4 A 337
03
AC3
SOFTWARE
ARG A:110 , ASN A:111 , SO4 A:339
BINDING SITE FOR RESIDUE SO4 A 338
04
AC4
SOFTWARE
ARG A:110 , ASN A:111 , SO4 A:338
BINDING SITE FOR RESIDUE SO4 A 339
05
AC5
SOFTWARE
TRP A:97 , HIS A:122 , LYS A:126 , LYS A:149 , ALA A:150
BINDING SITE FOR RESIDUE SO4 A 340
06
AC6
SOFTWARE
LYS A:192 , PRO A:203 , ARG A:205
BINDING SITE FOR RESIDUE SO4 A 341
07
AC7
SOFTWARE
PRO A:42 , ALA A:104 , SER A:105 , GLN A:106 , PRO A:169 , ILE A:217 , HIS A:267 , GLN A:268
BINDING SITE FOR RESIDUE SO4 A 342
08
CC5
SOFTWARE
ALA A:285 , THR A:316 , GLU B:258 , VAL B:259
BINDING SITE FOR RESIDUE SO4 A 343
09
CC7
SOFTWARE
ARG A:121 , GLY A:128 , PHE A:129 , ASP A:163
BINDING SITE FOR RESIDUE SO4 A 344
10
DC3
SOFTWARE
TYR A:222 , GLN A:223
BINDING SITE FOR RESIDUE SO4 A 345
11
DC5
SOFTWARE
LYS A:194 , LYS A:195 , ASP A:201
BINDING SITE FOR RESIDUE SO4 A 346
12
EC5
SOFTWARE
LYS A:311 , ARG A:312
BINDING SITE FOR RESIDUE SO4 A 347
13
EC6
SOFTWARE
GLN A:292 , ASP B:62 , ASN B:63 , THR B:64 , ASP B:289
BINDING SITE FOR RESIDUE SO4 B 340
14
FC4
SOFTWARE
ASN A:154 , THR A:157 , ASP A:165 , ASP A:166
BINDING SITE FOR RESIDUE CA A 348
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_43_3qedD01 (D:29-310)
1b: PFAM_Glyco_hydro_43_3qedD02 (D:29-310)
1c: PFAM_Glyco_hydro_43_3qedD03 (D:29-310)
1d: PFAM_Glyco_hydro_43_3qedD04 (D:29-310)
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Clans
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(
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Families
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(
)
Organisms
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)
(
)
Clan
:
B_Fructosidase
(34)
Family
:
Glyco_hydro_43
(11)
Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa)
(3)
1a
Glyco_hydro_43-3qedD01
D:29-310
1b
Glyco_hydro_43-3qedD02
D:29-310
1c
Glyco_hydro_43-3qedD03
D:29-310
1d
Glyco_hydro_43-3qedD04
D:29-310
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Asym.Unit (211 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
Biol.Unit 3 (55 KB)
Header - Biol.Unit 3
Biol.Unit 4 (55 KB)
Header - Biol.Unit 4
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