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Biol. Unit 4
Info
Asym.Unit (211 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (55 KB)
Biol.Unit 4 (55 KB)
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(1)
Title
:
THE STRUCTURE AND FUNCTION OF AN ARABINAN-SPECIFIC ALPHA-1,2-ARABINOFURANOSIDASE IDENTIFIED FROM SCREENING THE ACTIVITIES OF BACTERIAL GH43 GLYCOSIDE HYDROLASES
Authors
:
A. Cartmell, L. S. Mckee, M. Pena, J. Larsbrink, H. Brumer, R. J. Lewis, A Nielsen, H. J. Gilbert, J. Marles-Wright
Date
:
20 Jan 11 (Deposition) - 16 Feb 11 (Release) - 11 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.99
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
5-Bladed Beta Propeller, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Cartmell, L. S. Mckee, M. J. Pena, J. Larsbrink, H. Brumer, S. Kaneko H. Ichinose, R. J. Lewis, A. Vikso-Nielsen, H. J. Gilbert, J. Marles-Wright
The Structure And Function Of An Arabinan-Specific {Alpha}-1, 2-Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases.
J. Biol. Chem. V. 286 15483 2011
[
close entry info
]
Hetero Components
(2, 22)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3af: SULFATE ION (SO4af)
3ag: SULFATE ION (SO4ag)
3ah: SULFATE ION (SO4ah)
3ai: SULFATE ION (SO4ai)
3aj: SULFATE ION (SO4aj)
3ak: SULFATE ION (SO4ak)
3al: SULFATE ION (SO4al)
3am: SULFATE ION (SO4am)
3an: SULFATE ION (SO4an)
3ao: SULFATE ION (SO4ao)
3ap: SULFATE ION (SO4ap)
3aq: SULFATE ION (SO4aq)
3ar: SULFATE ION (SO4ar)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
4a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
14
Ligand/Ion
SULFATE ION
4
TAM
-1
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
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Sites
(17, 17)
Info
All Sites
01: BC7 (SOFTWARE)
02: BC8 (SOFTWARE)
03: BC9 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC6 (SOFTWARE)
08: DC1 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC7 (SOFTWARE)
11: DC9 (SOFTWARE)
12: EC1 (SOFTWARE)
13: EC3 (SOFTWARE)
14: EC4 (SOFTWARE)
15: EC8 (SOFTWARE)
16: EC9 (SOFTWARE)
17: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC7
SOFTWARE
ASP D:41 , MSE D:69 , ALA D:104 , ARG D:295 , SO4 D:342
BINDING SITE FOR RESIDUE SO4 D 335
02
BC8
SOFTWARE
SER D:105 , GLN D:106 , ASP D:168 , PRO D:169 , ILE D:217 , TRP D:218 , HIS D:267 , GLN D:268
BINDING SITE FOR RESIDUE SO4 D 336
03
BC9
SOFTWARE
ARG D:110 , ASN D:111 , LYS D:195
BINDING SITE FOR RESIDUE SO4 D 337
04
CC1
SOFTWARE
HIS D:122 , LYS D:126 , LYS D:149 , ALA D:150
BINDING SITE FOR RESIDUE SO4 D 338
05
CC2
SOFTWARE
LYS D:194 , LYS D:195
BINDING SITE FOR RESIDUE SO4 D 339
06
CC4
SOFTWARE
LYS C:237 , GLU C:258 , VAL C:259 , THR D:316 , THR D:317
BINDING SITE FOR RESIDUE SO4 C 341
07
CC6
SOFTWARE
ASP D:26 , GLN D:28 , ASN D:82
BINDING SITE FOR RESIDUE SO4 D 340
08
DC1
SOFTWARE
LYS D:192 , ARG D:205
BINDING SITE FOR RESIDUE SO4 D 341
09
DC4
SOFTWARE
ASN D:185 , GLU D:215 , SO4 D:335
BINDING SITE FOR RESIDUE SO4 D 342
10
DC7
SOFTWARE
GLU D:301 , PHE D:303 , LYS D:311 , ARG D:312 , ILE D:313 , VAL D:314
BINDING SITE FOR RESIDUE SO4 D 343
11
DC9
SOFTWARE
PRO D:188 , ILE D:207 , GLU D:208 , GLY D:209 , LEU D:210
BINDING SITE FOR RESIDUE SO4 D 344
12
EC1
SOFTWARE
PRO D:211 , GLU D:212
BINDING SITE FOR RESIDUE SO4 D 345
13
EC3
SOFTWARE
SER D:25 , ASP D:26
BINDING SITE FOR RESIDUE SO4 D 346
14
EC4
SOFTWARE
PHE C:234 , PRO D:288 , ASP D:289
BINDING SITE FOR RESIDUE SO4 D 347
15
EC8
SOFTWARE
ARG D:205 , ALA D:206
BINDING SITE FOR RESIDUE SO4 D 348
16
EC9
SOFTWARE
ASN C:31 , PRO C:32 , GLY C:261 , TYR C:281 , THR C:283 , ALA C:285 , SER C:298 , THR C:316 , LYS D:237 , GLU D:258 , VAL D:259
BINDING SITE FOR RESIDUE TAM C 347
17
FC3
SOFTWARE
ASN D:154 , THR D:157 , ASP D:165 , ASP D:166
BINDING SITE FOR RESIDUE CA D 349
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_43_3qedD01 (D:29-310)
1b: PFAM_Glyco_hydro_43_3qedD02 (D:29-310)
1c: PFAM_Glyco_hydro_43_3qedD03 (D:29-310)
1d: PFAM_Glyco_hydro_43_3qedD04 (D:29-310)
View:
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Clans
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)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
B_Fructosidase
(34)
Family
:
Glyco_hydro_43
(11)
Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa)
(3)
1a
Glyco_hydro_43-3qedD01
D:29-310
1b
Glyco_hydro_43-3qedD02
D:29-310
1c
Glyco_hydro_43-3qedD03
D:29-310
1d
Glyco_hydro_43-3qedD04
D:29-310
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Chain D
Asymmetric Unit 1
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Asym.Unit (211 KB)
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Biol.Unit 3 (55 KB)
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