3P1M - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN FERREDOXIN-1 (FDX1) IN COMPLEX WITH IRON-SULFUR CLUSTER

Authors :   A. Chaikuad, C. Johansson, T. Krojer, W. W. Yue, C. Phillips, J. E. Bray, A. C. W. Pike, J. R. C. Muniz, M. Vollmar, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, K. Kavanagh, U. Oppermann, Structural Gen Consortium (Sgc)

Date :   30 Sep 10 (Deposition) - 03 Nov 10 (Release) - 03 Nov 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.54

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,G  (1x)
Biol. Unit 2: B,H  (1x)
Biol. Unit 3: C,F  (1x)
Biol. Unit 4: D,E  (1x)

Keywords :   Structural Genomics Consortium, Sgc, Electron Transport, Adrenodoxin, Ferredoxin, Iron-Sulfur Cluster, Mitochondria (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Chaikuad, C. Johansson, T. Krojer, W. W. Yue, C. Phillips, J. E. Bray A. C. W. Pike, J. R. C. Muniz, M. Vollmar, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, K. Kavanagh, U. Oppermann
Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex With Iron-Sulfur Cluster
To Be Published
PubMed: search

Molecule 1 - ADRENODOXIN, MITOCHONDRIAL
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC-CTHF
	Expression System Strain	:	BL21(DE3)-R3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	2FE-2S FERREDOXIN-TYPE DOMAIN, UNP RESIDUES 61-184
	Gene	:	ADX, FDX1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ADRENAL FERREDOXIN, FERREDOXIN-1, HEPATOREDOXIN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A						G
Biological Unit 2 (1x)	:		B						H
Biological Unit 3 (1x)	:			C			F
Biological Unit 4 (1x)	:				D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 27)

No.	Name	Count	Type	Full Name
1	FES	8	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER
2	FLC	9	Ligand/Ion	CITRATE ANION
3	GOL	2	Ligand/Ion	GLYCEROL
4	K	8	Ligand/Ion	POTASSIUM ION

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	FES	2	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER
2	FLC	2	Ligand/Ion	CITRATE ANION
3	GOL	1	Ligand/Ion	GLYCEROL
4	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	FES	2	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER
2	FLC	2	Ligand/Ion	CITRATE ANION
3	GOL	-1	Ligand/Ion	GLYCEROL
4	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 3 (3, 5)

No.	Name	Count	Type	Full Name
1	FES	2	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER
2	FLC	2	Ligand/Ion	CITRATE ANION
3	GOL	1	Ligand/Ion	GLYCEROL
4	K	-1	Ligand/Ion	POTASSIUM ION

Biological Unit 4 (2, 5)

No.	Name	Count	Type	Full Name
1	FES	2	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER
2	FLC	3	Ligand/Ion	CITRATE ANION
3	GOL	-1	Ligand/Ion	GLYCEROL
4	K	-1	Ligand/Ion	POTASSIUM ION

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:104 , CYS A:106 , GLY A:108 , LEU A:110 , ALA A:111 , CYS A:112 , CYS A:115 , CYS A:152	BINDING SITE FOR RESIDUE FES A 2
02	AC2	SOFTWARE	VAL A:171 , ARG A:175 , ASP A:179 , K A:192 , TYR G:142 , GLY G:143 , LEU G:144	BINDING SITE FOR RESIDUE FLC A 6
03	AC3	SOFTWARE	FLC A:6 , SER A:177 , ASP A:179	BINDING SITE FOR RESIDUE K A 192
04	AC4	SOFTWARE	CYS B:106 , GLY B:108 , CYS B:112 , CYS B:115 , CYS B:152	BINDING SITE FOR RESIDUE FES B 3
05	AC5	SOFTWARE	TYR B:142 , GLY B:143 , LEU B:144 , K B:193 , HOH B:201 , TYR H:142 , VAL H:171 , ARG H:175 , ASP H:179	BINDING SITE FOR RESIDUE FLC B 192
06	AC6	SOFTWARE	FLC B:192 , HOH B:201 , SER H:177 , ASP H:179	BINDING SITE FOR RESIDUE K B 193
07	AC7	SOFTWARE	GLY C:104 , CYS C:106 , GLY C:108 , LEU C:110 , CYS C:112 , CYS C:115 , CYS C:152	BINDING SITE FOR RESIDUE FES C 4
08	AC8	SOFTWARE	ARG C:175 , ASP C:179 , K C:192 , HOH C:203 , GLY F:143 , LEU F:144	BINDING SITE FOR RESIDUE FLC C 5
09	AC9	SOFTWARE	GLY C:143 , K F:8 , TYR F:142 , VAL F:171 , ARG F:175 , ASP F:179	BINDING SITE FOR RESIDUE FLC C 8
10	BC1	SOFTWARE	FLC C:5 , SER C:177 , ASP C:179	BINDING SITE FOR RESIDUE K C 192
11	BC2	SOFTWARE	CYS D:106 , GLY D:108 , LEU D:110 , ALA D:111 , CYS D:112 , CYS D:115 , CYS D:152	BINDING SITE FOR RESIDUE FES D 5
12	BC3	SOFTWARE	VAL D:171 , ARG D:175 , ASP D:179 , K D:192 , HOH D:205 , TYR E:142 , GLY E:143 , LEU E:144	BINDING SITE FOR RESIDUE FLC D 2
13	BC4	SOFTWARE	LEU D:79 , THR D:80 , HOH D:200	BINDING SITE FOR RESIDUE FLC D 9
14	BC5	SOFTWARE	FLC D:2 , SER D:177 , ASP D:179 , HOH D:205	BINDING SITE FOR RESIDUE K D 192
15	BC6	SOFTWARE	CYS E:106 , GLY E:108 , CYS E:112 , CYS E:115 , CYS E:152	BINDING SITE FOR RESIDUE FES E 6
16	BC7	SOFTWARE	ALA D:141 , TYR D:142 , GLY D:143 , LEU D:144 , VAL E:171 , ALA E:174 , ARG E:175 , K E:192 , HOH E:202	BINDING SITE FOR RESIDUE FLC E 4
17	BC8	SOFTWARE	FLC E:4 , SER E:177 , ASP E:179	BINDING SITE FOR RESIDUE K E 192
18	BC9	SOFTWARE	GLY F:104 , CYS F:106 , GLY F:108 , CYS F:112 , CYS F:115 , CYS F:152	BINDING SITE FOR RESIDUE FES F 7
19	CC1	SOFTWARE	FLC C:8 , HOH C:222 , SER F:177 , ASP F:179	BINDING SITE FOR RESIDUE K F 8
20	CC2	SOFTWARE	LEU C:140 , HOH C:265 , HOH C:266 , LEU F:140 , VAL F:171 , HOH F:216	BINDING SITE FOR RESIDUE GOL F 1
21	CC3	SOFTWARE	GLY G:104 , CYS G:106 , GLY G:108 , CYS G:112 , CYS G:115 , CYS G:152	BINDING SITE FOR RESIDUE FES G 1
22	CC4	SOFTWARE	GLY A:143 , TYR G:142 , VAL G:171 , ARG G:175 , ASP G:179 , K G:193	BINDING SITE FOR RESIDUE FLC G 192
23	CC5	SOFTWARE	HOH A:197 , SER G:177 , ASP G:179 , FLC G:192	BINDING SITE FOR RESIDUE K G 193
24	CC6	SOFTWARE	LEU A:140 , LEU G:140 , VAL G:171 , HOH G:207	BINDING SITE FOR RESIDUE GOL G 194
25	CC7	SOFTWARE	CYS H:106 , GLY H:108 , LEU H:110 , CYS H:112 , CYS H:115 , CYS H:152	BINDING SITE FOR RESIDUE FES H 8
26	CC8	SOFTWARE	VAL B:171 , ARG B:175 , TYR H:142 , GLY H:143 , LEU H:144 , K H:192	BINDING SITE FOR RESIDUE FLC H 7
27	CC9	SOFTWARE	SER B:177 , ASP B:179 , FLC H:7	BINDING SITE FOR RESIDUE K H 192

(no "SS Bond" information available for 3P1M)

(no "Cis Peptide Bond" information available for 3P1M)

(no "SAP(SNP)/Variant" information available for 3P1M)

Asymmetric Unit (2, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	ADX_HUMAN	67-171	8	A:67-171 B:67-171 C:67-171 D:67-171 E:67-171 F:67-171 G:67-171 H:67-171
2	ADX	PS00814	Adrenodoxin family, iron-sulfur binding region signature.	ADX_HUMAN	106-116	8	A:106-116 B:106-116 C:106-116 D:106-116 E:106-116 F:106-116 G:106-116 H:106-116

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	ADX_HUMAN	67-171	2	A:67-171 - - - - - G:67-171 -
2	ADX	PS00814	Adrenodoxin family, iron-sulfur binding region signature.	ADX_HUMAN	106-116	2	A:106-116 - - - - - G:106-116 -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	ADX_HUMAN	67-171	2	- B:67-171 - - - - - H:67-171
2	ADX	PS00814	Adrenodoxin family, iron-sulfur binding region signature.	ADX_HUMAN	106-116	2	- B:106-116 - - - - - H:106-116

Biological Unit 3 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	ADX_HUMAN	67-171	2	- - C:67-171 - - F:67-171 - -
2	ADX	PS00814	Adrenodoxin family, iron-sulfur binding region signature.	ADX_HUMAN	106-116	2	- - C:106-116 - - F:106-116 - -

Biological Unit 4 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	ADX_HUMAN	67-171	2	- - - D:67-171 E:67-171 - - -
2	ADX	PS00814	Adrenodoxin family, iron-sulfur binding region signature.	ADX_HUMAN	106-116	2	- - - D:106-116 E:106-116 - - -

(no "Exon" information available for 3P1M)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:126
 aligned with ADX_HUMAN | P10109 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:126
                                                                                                                                                184       
                                    75        85        95       105       115       125       135       145       155       165       175        |-      
            ADX_HUMAN    66 KITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS-------   -
               SCOP domains d3p1ma_ A: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhh...................eeeehhhhhhh....hhhhhhhhh........eee......hhhhh.eeee...hhhhhh...........hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -2FE2S_FER_2  PDB: A:67-171 UniProt: 67-171                                                               -------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------ADX        --------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3p1m A  66 KITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTSAENLYFQ 191
                                    75        85        95       105       115       125       135       145       155       165       175       185

Chain B from PDB  Type:PROTEIN  Length:126
 aligned with ADX_HUMAN | P10109 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:126
                                                                                                                                                184       
                                    75        85        95       105       115       125       135       145       155       165       175        |-      
            ADX_HUMAN    66 KITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS-------   -
               SCOP domains d3p1mb_ B: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....eeeeee....hhhhhhhhh...................eee.hhhhhh.....hhhhhhhhh........eee......hhhhh.eeee...hhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -2FE2S_FER_2  PDB: B:67-171 UniProt: 67-171                                                               -------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------ADX        --------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3p1m B  66 KITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTSAENLYFQ 191
                                    75        85        95       105       115       125       135       145       155       165       175       185

Chain C from PDB  Type:PROTEIN  Length:127
 aligned with ADX_HUMAN | P10109 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:127
                                                                                                                                                 184       
                                    74        84        94       104       114       124       134       144       154       164       174       184       
            ADX_HUMAN    65 DKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS-------   -
               SCOP domains d3p1mc_ C: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee...hhhhhhhhh...................eeeehhhhhhh....hhhhhhhhh........eee......hhhhh.eeee...hhhhhh...........hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --2FE2S_FER_2  PDB: C:67-171 UniProt: 67-171                                                               -------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------ADX        --------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1m C  65 DKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTSAENLYFQ 191
                                    74        84        94       104       114       124       134       144       154       164       174       184

Chain D from PDB  Type:PROTEIN  Length:127
 aligned with ADX_HUMAN | P10109 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:127
                                                                                                                                                 184       
                                    74        84        94       104       114       124       134       144       154       164       174       184       
            ADX_HUMAN    65 DKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS-------   -
               SCOP domains d3p1md_ D: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee...hhhhhhhhh...................eeeehhhhhh.....hhhhhhhhhh.......eee......hhhhh.eeee...hhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --2FE2S_FER_2  PDB: D:67-171 UniProt: 67-171                                                               -------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------ADX        --------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1m D  65 DKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTSAENLYFQ 191
                                    74        84        94       104       114       124       134       144       154       164       174       184

Chain E from PDB  Type:PROTEIN  Length:127
 aligned with ADX_HUMAN | P10109 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:127
                                                                                                                                                 184       
                                    74        84        94       104       114       124       134       144       154       164       174       184       
            ADX_HUMAN    65 DKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS-------   -
               SCOP domains d3p1me_ E: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee...hhhhhhhhh...................eee.hhhhhh.....hhhhhhhhh........eee......hhhhh.eeee...hhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --2FE2S_FER_2  PDB: E:67-171 UniProt: 67-171                                                               -------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------ADX        --------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1m E  65 DKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTSAENLYFQ 191
                                    74        84        94       104       114       124       134       144       154       164       174       184

Chain F from PDB  Type:PROTEIN  Length:128
 aligned with ADX_HUMAN | P10109 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:128
                                                                                                                                                  184       
                                    73        83        93       103       113       123       133       143       153       163       173       183|       
            ADX_HUMAN    64 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS-------   -
               SCOP domains d3p1mf_ F: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....eeeeeee...hhhhhhhhh...................eee.hhhhhh.....hhhhhhhhh........eee......hhhhh.eeee...hhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---2FE2S_FER_2  PDB: F:67-171 UniProt: 67-171                                                               -------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------ADX        --------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1m F  64 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTSAENLYFQ 191
                                    73        83        93       103       113       123       133       143       153       163       173       183

Chain G from PDB  Type:PROTEIN  Length:128
 aligned with ADX_HUMAN | P10109 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:128
                                                                                                                                                  184       
                                    73        83        93       103       113       123       133       143       153       163       173       183|       
            ADX_HUMAN    64 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS-------   -
               SCOP domains d3p1mg_ G: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....eeeeeee...hhhhhhhhh...................eee.hhhhhh.....hhhhhhhhh........eee......hhhhh.eeee...hhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---2FE2S_FER_2  PDB: G:67-171 UniProt: 67-171                                                               -------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------ADX        --------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1m G  64 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTSAENLYFQ 191
                                    73        83        93       103       113       123       133       143       153       163       173       183

Chain H from PDB  Type:PROTEIN  Length:128
 aligned with ADX_HUMAN | P10109 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:128
                                                                                                                                                  184       
                                    73        83        93       103       113       123       133       143       153       163       173       183|       
            ADX_HUMAN    64 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTS-------   -
               SCOP domains d3p1mh_ H: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------Fer2-3p1mH01 H:72-157                                                                 ---------------------------------- Pfam domains (1)
           Pfam domains (2) --------Fer2-3p1mH02 H:72-157                                                                 ---------------------------------- Pfam domains (2)
           Pfam domains (3) --------Fer2-3p1mH03 H:72-157                                                                 ---------------------------------- Pfam domains (3)
           Pfam domains (4) --------Fer2-3p1mH04 H:72-157                                                                 ---------------------------------- Pfam domains (4)
           Pfam domains (5) --------Fer2-3p1mH05 H:72-157                                                                 ---------------------------------- Pfam domains (5)
           Pfam domains (6) --------Fer2-3p1mH06 H:72-157                                                                 ---------------------------------- Pfam domains (6)
           Pfam domains (7) --------Fer2-3p1mH07 H:72-157                                                                 ---------------------------------- Pfam domains (7)
           Pfam domains (8) --------Fer2-3p1mH08 H:72-157                                                                 ---------------------------------- Pfam domains (8)
         Sec.struct. author ..eeeeeee.....eeeeeee...hhhhhhhhh...................eeeehhhhhh.....hhhhhhhhhh.......eee......hhhhh.eeee...hhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---2FE2S_FER_2  PDB: H:67-171 UniProt: 67-171                                                               -------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------ADX        --------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p1m H  64 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGKTSAENLYFQ 191
                                    73        83        93       103       113       123       133       143       153       163       173       183

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: beta-Grasp (ubiquitin-like) (1032)

Superfamily: 2Fe-2S ferredoxin-like (174)

Family: 2Fe-2S ferredoxin-related (74)

Protein domain: automated matches (14)

Human (Homo sapiens) [TaxId: 9606] (5)

1a	d3p1ma_	A:
1b	d3p1me_	E:
1c	d3p1mf_	F:
1d	d3p1mg_	G:
1e	d3p1mh_	H:
1f	d3p1mb_	B:
1g	d3p1mc_	C:
1h	d3p1md_	D:

(no "CATH Domain" information available for 3P1M)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Fer2 (69)

Family: Fer2 (60)

Homo sapiens (Human) (5)

1a	Fer2-3p1mH01	H:72-157
1b	Fer2-3p1mH02	H:72-157
1c	Fer2-3p1mH03	H:72-157
1d	Fer2-3p1mH04	H:72-157
1e	Fer2-3p1mH05	H:72-157
1f	Fer2-3p1mH06	H:72-157
1g	Fer2-3p1mH07	H:72-157
1h	Fer2-3p1mH08	H:72-157

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (ADX_HUMAN | P10109)

molecular function
	GO:0051537	2 iron, 2 sulfur cluster binding	Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006700	C21-steroid hormone biosynthetic process	The chemical reactions and pathways resulting in the formation of C21-steroid hormones, steroid compounds containing 21 carbons which function as hormones.
	GO:0008203	cholesterol metabolic process	The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
	GO:0042446	hormone biosynthetic process	The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0044281	small molecule metabolic process	The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule.
	GO:0006694	steroid biosynthetic process	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
	GO:0008202	steroid metabolic process	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
	GO:0016125	sterol metabolic process	The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
cellular component
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	Cis Peptide Bonds
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	3p1m
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	ADX_HUMAN \| P10109	:	3n9y 3n9z 3na0 3na1

(no "Related Entries Specified in the PDB File" available for 3P1M)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 27)

Sites (27, 27)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 16)

Exons (0, 0)

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SCOP Domains (1, 8)

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Pfam Domains (1, 8)

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