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3P1M
Biol. Unit 4
Info
Asym.Unit (347 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (86 KB)
Biol.Unit 3 (88 KB)
Biol.Unit 4 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FERREDOXIN-1 (FDX1) IN COMPLEX WITH IRON-SULFUR CLUSTER
Authors
:
A. Chaikuad, C. Johansson, T. Krojer, W. W. Yue, C. Phillips, J. E. Bray, A. C. W. Pike, J. R. C. Muniz, M. Vollmar, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, K. Kavanagh, U. Oppermann, Structural Gen Consortium (Sgc)
Date
:
30 Sep 10 (Deposition) - 03 Nov 10 (Release) - 03 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,G (1x)
Biol. Unit 2: B,H (1x)
Biol. Unit 3: C,F (1x)
Biol. Unit 4: D,E (1x)
Keywords
:
Structural Genomics Consortium, Sgc, Electron Transport, Adrenodoxin, Ferredoxin, Iron-Sulfur Cluster, Mitochondria
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chaikuad, C. Johansson, T. Krojer, W. W. Yue, C. Phillips, J. E. Bray A. C. W. Pike, J. R. C. Muniz, M. Vollmar, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, K. Kavanagh, U. Oppermann
Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex With Iron-Sulfur Cluster
To Be Published
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: FE2/S2 (INORGANIC) CLUSTER (FESa)
1b: FE2/S2 (INORGANIC) CLUSTER (FESb)
1c: FE2/S2 (INORGANIC) CLUSTER (FESc)
1d: FE2/S2 (INORGANIC) CLUSTER (FESd)
1e: FE2/S2 (INORGANIC) CLUSTER (FESe)
1f: FE2/S2 (INORGANIC) CLUSTER (FESf)
1g: FE2/S2 (INORGANIC) CLUSTER (FESg)
1h: FE2/S2 (INORGANIC) CLUSTER (FESh)
2a: CITRATE ANION (FLCa)
2b: CITRATE ANION (FLCb)
2c: CITRATE ANION (FLCc)
2d: CITRATE ANION (FLCd)
2e: CITRATE ANION (FLCe)
2f: CITRATE ANION (FLCf)
2g: CITRATE ANION (FLCg)
2h: CITRATE ANION (FLCh)
2i: CITRATE ANION (FLCi)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
2
FLC
3
Ligand/Ion
CITRATE ANION
3
GOL
-1
Ligand/Ion
GLYCEROL
4
K
-1
Ligand/Ion
POTASSIUM ION
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Sites
(7, 7)
Info
All Sites
1: BC2 (SOFTWARE)
2: BC3 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
5: BC6 (SOFTWARE)
6: BC7 (SOFTWARE)
7: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
BC2
SOFTWARE
CYS D:106 , GLY D:108 , LEU D:110 , ALA D:111 , CYS D:112 , CYS D:115 , CYS D:152
BINDING SITE FOR RESIDUE FES D 5
2
BC3
SOFTWARE
VAL D:171 , ARG D:175 , ASP D:179 , K D:192 , HOH D:205 , TYR E:142 , GLY E:143 , LEU E:144
BINDING SITE FOR RESIDUE FLC D 2
3
BC4
SOFTWARE
LEU D:79 , THR D:80 , HOH D:200
BINDING SITE FOR RESIDUE FLC D 9
4
BC5
SOFTWARE
FLC D:2 , SER D:177 , ASP D:179 , HOH D:205
BINDING SITE FOR RESIDUE K D 192
5
BC6
SOFTWARE
CYS E:106 , GLY E:108 , CYS E:112 , CYS E:115 , CYS E:152
BINDING SITE FOR RESIDUE FES E 6
6
BC7
SOFTWARE
ALA D:141 , TYR D:142 , GLY D:143 , LEU D:144 , VAL E:171 , ALA E:174 , ARG E:175 , K E:192 , HOH E:202
BINDING SITE FOR RESIDUE FLC E 4
7
BC8
SOFTWARE
FLC E:4 , SER E:177 , ASP E:179
BINDING SITE FOR RESIDUE K E 192
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (D:67-171,E:67-171)
2: ADX (D:106-116,E:106-116)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
ADX_HUMAN
67-171
2
-
-
-
D:67-171
E:67-171
-
-
-
2
ADX
PS00814
Adrenodoxin family, iron-sulfur binding region signature.
ADX_HUMAN
106-116
2
-
-
-
D:106-116
E:106-116
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3p1ma_ (A:)
1b: SCOP_d3p1me_ (E:)
1c: SCOP_d3p1mf_ (F:)
1d: SCOP_d3p1mg_ (G:)
1e: SCOP_d3p1mh_ (H:)
1f: SCOP_d3p1mb_ (B:)
1g: SCOP_d3p1mc_ (C:)
1h: SCOP_d3p1md_ (D:)
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Classes
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)
(
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin-related
(74)
Protein domain
:
automated matches
(14)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3p1ma_
A:
1b
d3p1me_
E:
1c
d3p1mf_
F:
1d
d3p1mg_
G:
1e
d3p1mh_
H:
1f
d3p1mb_
B:
1g
d3p1mc_
C:
1h
d3p1md_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Fer2_3p1mH01 (H:72-157)
1b: PFAM_Fer2_3p1mH02 (H:72-157)
1c: PFAM_Fer2_3p1mH03 (H:72-157)
1d: PFAM_Fer2_3p1mH04 (H:72-157)
1e: PFAM_Fer2_3p1mH05 (H:72-157)
1f: PFAM_Fer2_3p1mH06 (H:72-157)
1g: PFAM_Fer2_3p1mH07 (H:72-157)
1h: PFAM_Fer2_3p1mH08 (H:72-157)
View:
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Fer2
(69)
Family
:
Fer2
(60)
Homo sapiens (Human)
(5)
1a
Fer2-3p1mH01
H:72-157
1b
Fer2-3p1mH02
H:72-157
1c
Fer2-3p1mH03
H:72-157
1d
Fer2-3p1mH04
H:72-157
1e
Fer2-3p1mH05
H:72-157
1f
Fer2-3p1mH06
H:72-157
1g
Fer2-3p1mH07
H:72-157
1h
Fer2-3p1mH08
H:72-157
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (347 KB)
Header - Asym.Unit
Biol.Unit 1 (87 KB)
Header - Biol.Unit 1
Biol.Unit 2 (86 KB)
Header - Biol.Unit 2
Biol.Unit 3 (88 KB)
Header - Biol.Unit 3
Biol.Unit 4 (87 KB)
Header - Biol.Unit 4
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