3OV0 - JenaLib

Title :   STRUCTURE OF DODECAHEME CYTOCHROME C GSU1996

Authors :   P. R. Pokkuluri, M. Schiffer

Date :   15 Sep 10 (Deposition) - 29 Dec 10 (Release) - 30 Mar 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (4x)

Keywords :   Multiheme Cytochrome C, Electron Transfer, Fe Reduction, Geobacter Sulfurreducens, Cytochrome C7 (C3) Fold Domains, Protein Composed Of Cytochrome C7 (C3) Fold Domains, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. R. Pokkuluri, Y. Y. Londer, N. E. Duke, M. Pessanha, X. Yang, V. Orshonsky, L. Orshonsky, J. Erickson, Y. Zagyanskiy, C. A. Salgueiro, M. Schiffer
Structure Of A Novel Dodecaheme Cytochrome C From Geobacter Sulfurreducens Reveals An Extended 12Nm Protein With Interacting Hemes.
J. Struct. Biol. V. 174 223 2011
PubMed-ID: 21130881 | Reference-DOI: 10.1016/J.JSB.2010.11.022
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:4 , VAL A:6 , PHE A:8 , PHE A:18 , HIS A:20 , HIS A:23 , LEU A:24 , CYS A:31 , CYS A:34 , HIS A:35 , LEU A:41 , PRO A:44 , HEM A:602	BINDING SITE FOR RESIDUE HEM A 601
02	AC2	SOFTWARE	PHE A:18 , ILE A:22 , HIS A:23 , TYR A:27 , PHE A:39 , CYS A:58 , CYS A:61 , HIS A:62 , ALA A:67 , ARG A:78 , CYS A:79 , HEM A:601 , HEM A:603	BINDING SITE FOR RESIDUE HEM A 602
03	AC3	SOFTWARE	PHE A:8 , ARG A:46 , TYR A:47 , THR A:48 , MET A:49 , VAL A:70 , CYS A:76 , CYS A:79 , HIS A:80 , HEM A:602 , HEM A:604	BINDING SITE FOR RESIDUE HEM A 603
04	AC4	SOFTWARE	LEU A:10 , ASN A:12 , HIS A:80 , PHE A:99 , HIS A:101 , VAL A:105 , CYS A:112 , CYS A:115 , HIS A:116 , HEM A:603	BINDING SITE FOR RESIDUE HEM A 604
05	AC5	SOFTWARE	VAL A:98 , PHE A:99 , HIS A:104 , ILE A:121 , CYS A:138 , CYS A:141 , HIS A:142 , MET A:146 , ALA A:147 , HEM A:606	BINDING SITE FOR RESIDUE HEM A 605
06	AC6	SOFTWARE	TYR A:89 , ASN A:126 , VAL A:127 , MET A:129 , GLY A:152 , CYS A:154 , CYS A:157 , HIS A:158 , CYS A:190 , HEM A:605	BINDING SITE FOR RESIDUE HEM A 606
07	AC7	SOFTWARE	MET A:161 , PRO A:163 , VAL A:167 , PHE A:179 , HIS A:181 , HIS A:184 , LEU A:185 , TYR A:188 , CYS A:190 , CYS A:193 , HIS A:194 , PHE A:198 , TYR A:200 , LYS A:201 , ALA A:202 , HEM A:608	BINDING SITE FOR RESIDUE HEM A 607
08	AC8	SOFTWARE	GLU A:96 , PHE A:179 , HIS A:184 , MET A:187 , TYR A:188 , PHE A:198 , CYS A:218 , CYS A:221 , HIS A:222 , ALA A:227 , HEM A:607 , HEM A:609	BINDING SITE FOR RESIDUE HEM A 608
09	AC9	SOFTWARE	PHE A:169 , VAL A:174 , ARG A:206 , PHE A:207 , THR A:208 , MET A:209 , CYS A:218 , HIS A:222 , PHE A:228 , ALA A:231 , CYS A:234 , CYS A:237 , HIS A:238 , LEU A:241 , TYR A:278 , HEM A:608	BINDING SITE FOR RESIDUE HEM A 609
10	BC1	SOFTWARE	LEU A:241 , LYS A:242 , PRO A:243 , ALA A:244 , LEU A:246 , TYR A:248 , PHE A:257 , HIS A:259 , HIS A:262 , LEU A:263 , CYS A:268 , CYS A:271 , HIS A:272 , PHE A:276 , TYR A:278 , SER A:282	BINDING SITE FOR RESIDUE HEM A 610
11	BC2	SOFTWARE	TYR A:248 , PHE A:257 , HIS A:262 , PHE A:266 , CYS A:296 , CYS A:299 , HIS A:300 , ALA A:305	BINDING SITE FOR RESIDUE HEM A 611
12	BC3	SOFTWARE	GLU A:53 , ARG A:113 , TYR A:248 , THR A:250 , VAL A:252 , PRO A:284 , ALA A:285 , MET A:287 , CYS A:296 , VAL A:308 , ALA A:309 , CYS A:312 , CYS A:315 , HIS A:316	BINDING SITE FOR RESIDUE HEM A 612

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:318
 aligned with Q74BP5_GEOSL | Q74BP5 from UniProtKB/TrEMBL  Length:343

    Alignment length:318
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335        
         Q74BP5_GEOSL    26 KETKNVPFKLKNAAPVIFSHDIHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVRCHSGSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKGKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVCHNGKDAFSVADDCVKCHNM 343
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains Cytochrom_CIII-3ov0A01 A:1-88                                                           ---------------Paired_CXXCH_1-3ov0A02 A:104-147            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.......eee............hhhhhhh..........hhhhhhh.hhhhhh.........................eeeee..eeeeeehhhhh.......hhhhhh..........hhhhhhh..................hhhhhh.......eeeee.....eeeeehhhhhh..hhhhh..............hhhhhhhhhhhhhh..........................eee..eee..hhhhhh........................hhhhhhhhhhhh...........hhhhhee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ov0 A   1 KETKNVPFKLKNAAPVIFSHDIHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVRCHSGSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKGKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVCHNGKDAFSVADDCVKCHNM 318
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (2, 2)

Gene Ontology (1, 1)

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